Clone BS04308 Report

Search the DGRC for BS04308

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:43
Well:8
Vector:pDNR-Dual
Associated Gene/TranscriptCG42358-RA
Protein status:BS04308.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04308.3prime Sequence

892 bp (884 high quality bases) assembled on 2005-12-01

> BS04308.3prime
ATGGTCTAGAAAGCTTCTAATCCTTTTCGCCCTCGCGGCGTTTCTCGAAA
AGGGCCAGGAAGATGCCATCGGTAAGATCACTGTCCGGCTGGCAATACAG
GACGTTCTTGCCAATATTGGGATAGTCCTTGTCGCCCACATTGTGCCACT
TGTTGCGCAAGGCCTTCTTGCAGCTGAGCAGCTTGAAGGATGGATTTAGC
TGAAGACAACGCTGCACCACCTGCTCGTTTTCCTCCTTCCACAGCGAACA
CGTGCAGTAGGCAATGCGTTTGACGTTCGGAAAGGCGCCCATCGCGTGCG
ACAGGATCTTAATTTGCAAACCCTGCAGCTTTTGCAGCCGCTTGTCCTCC
TTCGGCTCGTCGCACACGGTCATGCGGTTTTGCATTCCGCTGCCAGAGCA
ACTAGGGTCCACCAGGATGTACTCTACGTCCGGAAAGCGTTCGGGTGTTA
GGTTCAAGGCGTCTCCCAAAATGGGTTTTACAATATCGCAACCAGCATCC
TTTGTTATTTCGCACAGCGTATTGTAGCGTACGTGGTCCTGCTCCACGGA
GTAGATGCATCCCTTGTTCTGCATCACATTGCATATGTGCACTGTCTTCA
TACCGGGAGCTGCGCACATATCCAGCACAGTGGCCCCAGACGGCGGAGCA
AGTAGTTCGGCGGCCAAACAGGTGGCCTTGTTCTGCAGTATAAACCTCTT
GCTGTGCACCAACGGATGGCGGACCCAGTAGTTGGACCACTTGGCAGGAA
AAATGAGCACACCCTCAACGTGCAGATCGGTCATGAACTCGTTCTCCGCC
AGCGATTTGATGGCAGTCAGAAAATCCGCATAGCTGGCGTCCGCAGGCAG
CTCTTTGCGCCGCCAGTCGCTTTTATGCAGGTAGTCCAAGGC

BS04308.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:45:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG5558-PA 1302 CG5558-RA 427..1302 892..17 4355 99.8 Minus
CG5558-PB 1281 CG5558-RB 406..1281 892..17 4355 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:18:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG42358-RA 1498 CG42358-RA 489..1364 892..17 4365 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:18:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19160727..19161171 448..892 2210 99.8 Plus
3R 32079331 3R 19160233..19160663 17..447 2155 100 Plus
Blast to na_te.dros performed on 2015-02-01 09:18:47 has no hits.

BS04308.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:45:07 Download gff for BS04308.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5558-PA 427..1302 17..892 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:05:28 Download gff for BS04308.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5558-PB 406..1281 17..892 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:34:45 Download gff for BS04308.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42358-RA 489..1375 4..892 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 10:00:26 Download gff for BS04308.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42358-RA 489..1375 4..892 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 10:00:26 Download gff for BS04308.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 19160222..19160663 4..447 98 <- Plus
3R 19160727..19161171 448..892 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:34:45 Download gff for BS04308.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14985944..14986385 4..447 98 <- Plus
arm_3R 14986449..14986893 448..892 99   Plus

BS04308.5prime Sequence

823 bp (736 high quality bases) assembled on 2005-11-29

> BS04308.5prime
GAAGTTATCAGTCGACATGAGTAAAAAACCGCATTCCATAAAAGTTCCCA
CCCAATACAGGGCGACTGCCAAGATTTTGAAGGCGGCACTGGAGCAGCAG
AAGTGCATCAAGACCCTAATATTTGCAGAGAAGCATGCCCGTACACGCTC
TTTGCATACGGTTCTGAAAAAATTTAGCGAAAATCGTGTGGCACTGGAAA
AGGCCATCGAAGAGACAGGACTGCTCAGGGACAATCCCAGTTTTGATCCC
AGTTTGGCCAAGATTCTAGTCACCGAACTGCTGTTTGGCAGGAAGGAGCT
GAACGGCGAAAGCAAACCCGTGCAAACGGTGCGAAGTTACAAGGATCGAC
TGCTAAATTCCATCAGAGATTTCGGTGTCCAGCGAAAAGAACCCAATCCT
CGATATGTGCGCATCAACACAAATCTATACAGCTTGGCGGAGGCCTTGGA
CTACCTGCATAAAAGCGACTGGCGGCGCAAGGAGCTGCCTGCGGACGCCA
GCTATGCGGATTTTCTGACTGCCATCAAATCGCTGGCGGAGAACGAGTTC
ATGACCGATCTGCACGTTGAGGGTGTGCTCATTTTTCCTGCCAAGTGGTC
CAACTACTGGGTCCGCCATCCGTTGGTGCACAGCAAGAGGTTTATACTGC
AGAACAAGGCCACCTGTTTGGCCGCCGAACTACTTGCTCCGCCGTCTGGG
GCCACTGTGCTGGATATGTGCGCAGCTCCCGGTATGAAGACAGTGCACAT
ATGCAATGTGATGCAGAACAAGGGATGCATCTACTCCGTGGAGCAGGACC
ACGTACGCTACAATACGCTGTGC

BS04308.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:45:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG5558-PA 1302 CG5558-RA 1..807 17..823 4035 100 Plus
CG5558-PB 1281 CG5558-RB 396..786 433..823 1955 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:34:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG42358-RA 1498 CG42358-RA 63..869 17..823 4035 100 Plus
CG42359-RA 966 CG5558-RB 63..435 17..389 1865 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:34:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19160791..19161226 823..388 2180 100 Minus
3R 32079331 3R 19161790..19162039 389..140 1250 100 Minus
3R 32079331 3R 19162116..19162238 139..17 615 100 Minus
Blast to na_te.dros performed on 2015-02-04 03:34:11 has no hits.

BS04308.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:45:08 Download gff for BS04308.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5558-PA 1..807 17..823 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:05:29 Download gff for BS04308.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5558-PA 1..807 17..823 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 06:53:51 Download gff for BS04308.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42358-RA 58..869 13..823 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:30:17 Download gff for BS04308.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42358-RA 58..869 13..823 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:30:17 Download gff for BS04308.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 19160791..19161224 390..823 100 <- Minus
3R 19161790..19162039 140..389 100 <- Minus
3R 19162116..19162243 13..139 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 06:53:51 Download gff for BS04308.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14986513..14986946 390..823 100 <- Minus
arm_3R 14987512..14987761 140..389 100 <- Minus
arm_3R 14987838..14987965 13..139 99   Minus

BS04308.complete Sequence

1334 bp (1334 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634921

> BS04308.complete
GAAGTTATCAGTCGACATGAGTAAAAAACCGCATTCCATAAAAGTTCCCA
CCCAATACAGGGCGACTGCCAAGATTTTGAAGGCGGCACTGGAGCAGCAG
AAGTGCATCAAGACCCTAATATTTGCAGAGAAGCATGCCCGTACACGCTC
TTTGCATACGGTTCTGAAAAAATTTAGCGAAAATCGTGTGGCACTGGAAA
AGGCCATCGAAGAGACAGGACTGCTCAGGGACAATCCCAGTTTTGATCCC
AGTTTGGCCAAGATTCTAGTCACCGAACTGCTGTTTGGCAGGAAGGAGCT
GAACGGCGAAAGCAAACCCGTGCAAACGGTGCGAAGTTACAAGGATCGAC
TGCTAAATTCCATCAGAGATTTCGGTGTCCAGCGAAAAGAACCCAATCCT
CGATATGTGCGCATCAACACAAATCTATACAGCTTGGCGGAGGCCTTGGA
CTACCTGCATAAAAGCGACTGGCGGCGCAAGGAGCTGCCTGCGGACGCCA
GCTATGCGGATTTTCTGACTGCCATCAAATCGCTGGCGGAGAACGAGTTC
ATGACCGATCTGCACGTTGAGGGTGTGCTCATTTTTCCTGCCAAGTGGTC
CAACTACTGGGTCCGCCATCCGTTGGTGCACAGCAAGAGGTTTATACTGC
AGAACAAGGCCACCTGTTTGGCCGCCGAACTACTTGCTCCGCCGTCTGGG
GCCACTGTGCTGGATATGTGCGCAGCTCCCGGTATGAAGACAGTGCACAT
ATGCAATGTGATGCAGAACAAGGGATGCATCTACTCCGTGGAGCAGGACC
ACGTACGCTACAATACGCTGTGCGAAATAACAAAGGATGCTGGTTGCGAT
ATTGTAAAACCCATTTTGGGAGACGCCTTGAACCTAACACCCGAACGCTT
TCCGGACGTAGAGTACATCCTGGTGGACCCTAGTTGCTCTGGCAGCGGAA
TGCAAAACCGCATGACCGTGTGCGACGAGCCGAAGGAGGACAAGCGGCTG
CAAAAGCTGCAGGGTTTGCAAATTAAGATCCTGTCGCACGCGATGGGCGC
CTTTCCGAACGTCAAACGCATTGCCTACTGCACGTGTTCGCTGTGGAAGG
AGGAAAACGAGCAGGTGGTGCAGCGTTGTCTTCAGCTAAATCCATCCTTC
AAGCTGCTCAGCTGCAAGAAGGCCTTGCGCAACAAGTGGCACAATGTGGG
CGACAAGGACTATCCCAATATTGGCAAGAACGTCCTGTATTGCCAGCCGG
ACAGTGATCTTACCGATGGCATCTTCCTGGCCCTTTTCGAGAAACGCCGC
GAGGGCGAAAAGGATTAGAAGCTTTCTAGACCAT

BS04308.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:11:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG42358-RA 1302 CG42358-PA 1..1302 17..1318 6510 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:11:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG42358-RA 1498 CG42358-RA 63..1364 17..1318 6510 100 Plus
CG42359-RA 966 CG5558-RB 63..435 17..389 1865 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:11:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19160727..19161226 887..388 2500 100 Minus
3R 32079331 3R 19160233..19160663 1318..888 2155 100 Minus
3R 32079331 3R 19161790..19162039 389..140 1250 100 Minus
3R 32079331 3R 19162116..19162238 139..17 615 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:11:15 has no hits.

BS04308.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:57:26 Download gff for BS04308.complete
Subject Subject Range Query Range Percent Splice Strand
CG5558-RA 1..1302 17..1318 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:33:44 Download gff for BS04308.complete
Subject Subject Range Query Range Percent Splice Strand
CG42358-RA 36..1353 13..1331 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:07 Download gff for BS04308.complete
Subject Subject Range Query Range Percent Splice Strand
CG42358-RA 63..1364 17..1318 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:57:26 Download gff for BS04308.complete
Subject Subject Range Query Range Percent Splice Strand
CG5558-RA 36..1353 13..1331 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:12:45 Download gff for BS04308.complete
Subject Subject Range Query Range Percent Splice Strand
CG42358-RA 63..1364 17..1318 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:12:45 Download gff for BS04308.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19160233..19160663 888..1318 100 <- Minus
3R 19160727..19161224 390..887 100 <- Minus
3R 19161790..19162039 140..389 100 <- Minus
3R 19162116..19162238 17..139 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:07 Download gff for BS04308.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14985955..14986385 888..1318 100 <- Minus
arm_3R 14986449..14986946 390..887 100 <- Minus
arm_3R 14987512..14987761 140..389 100 <- Minus
arm_3R 14987838..14987960 17..139 100   Minus

BS04308.pep Sequence

Translation from 16 to 1317

> BS04308.pep
MSKKPHSIKVPTQYRATAKILKAALEQQKCIKTLIFAEKHARTRSLHTVL
KKFSENRVALEKAIEETGLLRDNPSFDPSLAKILVTELLFGRKELNGESK
PVQTVRSYKDRLLNSIRDFGVQRKEPNPRYVRINTNLYSLAEALDYLHKS
DWRRKELPADASYADFLTAIKSLAENEFMTDLHVEGVLIFPAKWSNYWVR
HPLVHSKRFILQNKATCLAAELLAPPSGATVLDMCAAPGMKTVHICNVMQ
NKGCIYSVEQDHVRYNTLCEITKDAGCDIVKPILGDALNLTPERFPDVEY
ILVDPSCSGSGMQNRMTVCDEPKEDKRLQKLQGLQIKILSHAMGAFPNVK
RIAYCTCSLWKEENEQVVQRCLQLNPSFKLLSCKKALRNKWHNVGDKDYP
NIGKNVLYCQPDSDLTDGIFLALFEKRREGEKD*

BS04308.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG42358-PA 433 CG5558-PA 1..433 1..433 2279 100 Plus
CG8545-PA 891 CG8545-PA 417..584 209..373 158 26.9 Plus