Clone Sequence Records
BS04308.3prime Sequence
892 bp (884 high quality bases) assembled on 2005-12-01
> BS04308.3prime
ATGGTCTAGAAAGCTTCTAATCCTTTTCGCCCTCGCGGCGTTTCTCGAAA
AGGGCCAGGAAGATGCCATCGGTAAGATCACTGTCCGGCTGGCAATACAG
GACGTTCTTGCCAATATTGGGATAGTCCTTGTCGCCCACATTGTGCCACT
TGTTGCGCAAGGCCTTCTTGCAGCTGAGCAGCTTGAAGGATGGATTTAGC
TGAAGACAACGCTGCACCACCTGCTCGTTTTCCTCCTTCCACAGCGAACA
CGTGCAGTAGGCAATGCGTTTGACGTTCGGAAAGGCGCCCATCGCGTGCG
ACAGGATCTTAATTTGCAAACCCTGCAGCTTTTGCAGCCGCTTGTCCTCC
TTCGGCTCGTCGCACACGGTCATGCGGTTTTGCATTCCGCTGCCAGAGCA
ACTAGGGTCCACCAGGATGTACTCTACGTCCGGAAAGCGTTCGGGTGTTA
GGTTCAAGGCGTCTCCCAAAATGGGTTTTACAATATCGCAACCAGCATCC
TTTGTTATTTCGCACAGCGTATTGTAGCGTACGTGGTCCTGCTCCACGGA
GTAGATGCATCCCTTGTTCTGCATCACATTGCATATGTGCACTGTCTTCA
TACCGGGAGCTGCGCACATATCCAGCACAGTGGCCCCAGACGGCGGAGCA
AGTAGTTCGGCGGCCAAACAGGTGGCCTTGTTCTGCAGTATAAACCTCTT
GCTGTGCACCAACGGATGGCGGACCCAGTAGTTGGACCACTTGGCAGGAA
AAATGAGCACACCCTCAACGTGCAGATCGGTCATGAACTCGTTCTCCGCC
AGCGATTTGATGGCAGTCAGAAAATCCGCATAGCTGGCGTCCGCAGGCAG
CTCTTTGCGCCGCCAGTCGCTTTTATGCAGGTAGTCCAAGGC
BS04308.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:45:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5558-PA | 1302 | CG5558-RA | 427..1302 | 892..17 | 4355 | 99.8 | Minus |
CG5558-PB | 1281 | CG5558-RB | 406..1281 | 892..17 | 4355 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:18:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42358-RA | 1498 | CG42358-RA | 489..1364 | 892..17 | 4365 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:18:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19160727..19161171 | 448..892 | 2210 | 99.8 | Plus |
3R | 32079331 | 3R | 19160233..19160663 | 17..447 | 2155 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-01 09:18:47 has no hits.
BS04308.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:45:07 Download gff for
BS04308.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5558-PA | 427..1302 | 17..892 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:05:28 Download gff for
BS04308.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5558-PB | 406..1281 | 17..892 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:34:45 Download gff for
BS04308.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42358-RA | 489..1375 | 4..892 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 10:00:26 Download gff for
BS04308.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42358-RA | 489..1375 | 4..892 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 10:00:26 Download gff for
BS04308.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19160222..19160663 | 4..447 | 98 | <- | Plus |
3R | 19160727..19161171 | 448..892 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:34:45 Download gff for
BS04308.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14985944..14986385 | 4..447 | 98 | <- | Plus |
arm_3R | 14986449..14986893 | 448..892 | 99 | | Plus |
BS04308.5prime Sequence
823 bp (736 high quality bases) assembled on 2005-11-29
> BS04308.5prime
GAAGTTATCAGTCGACATGAGTAAAAAACCGCATTCCATAAAAGTTCCCA
CCCAATACAGGGCGACTGCCAAGATTTTGAAGGCGGCACTGGAGCAGCAG
AAGTGCATCAAGACCCTAATATTTGCAGAGAAGCATGCCCGTACACGCTC
TTTGCATACGGTTCTGAAAAAATTTAGCGAAAATCGTGTGGCACTGGAAA
AGGCCATCGAAGAGACAGGACTGCTCAGGGACAATCCCAGTTTTGATCCC
AGTTTGGCCAAGATTCTAGTCACCGAACTGCTGTTTGGCAGGAAGGAGCT
GAACGGCGAAAGCAAACCCGTGCAAACGGTGCGAAGTTACAAGGATCGAC
TGCTAAATTCCATCAGAGATTTCGGTGTCCAGCGAAAAGAACCCAATCCT
CGATATGTGCGCATCAACACAAATCTATACAGCTTGGCGGAGGCCTTGGA
CTACCTGCATAAAAGCGACTGGCGGCGCAAGGAGCTGCCTGCGGACGCCA
GCTATGCGGATTTTCTGACTGCCATCAAATCGCTGGCGGAGAACGAGTTC
ATGACCGATCTGCACGTTGAGGGTGTGCTCATTTTTCCTGCCAAGTGGTC
CAACTACTGGGTCCGCCATCCGTTGGTGCACAGCAAGAGGTTTATACTGC
AGAACAAGGCCACCTGTTTGGCCGCCGAACTACTTGCTCCGCCGTCTGGG
GCCACTGTGCTGGATATGTGCGCAGCTCCCGGTATGAAGACAGTGCACAT
ATGCAATGTGATGCAGAACAAGGGATGCATCTACTCCGTGGAGCAGGACC
ACGTACGCTACAATACGCTGTGC
BS04308.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:45:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5558-PA | 1302 | CG5558-RA | 1..807 | 17..823 | 4035 | 100 | Plus |
CG5558-PB | 1281 | CG5558-RB | 396..786 | 433..823 | 1955 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:34:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42358-RA | 1498 | CG42358-RA | 63..869 | 17..823 | 4035 | 100 | Plus |
CG42359-RA | 966 | CG5558-RB | 63..435 | 17..389 | 1865 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:34:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19160791..19161226 | 823..388 | 2180 | 100 | Minus |
3R | 32079331 | 3R | 19161790..19162039 | 389..140 | 1250 | 100 | Minus |
3R | 32079331 | 3R | 19162116..19162238 | 139..17 | 615 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 03:34:11 has no hits.
BS04308.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:45:08 Download gff for
BS04308.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5558-PA | 1..807 | 17..823 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:05:29 Download gff for
BS04308.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5558-PA | 1..807 | 17..823 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 06:53:51 Download gff for
BS04308.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42358-RA | 58..869 | 13..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:30:17 Download gff for
BS04308.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42358-RA | 58..869 | 13..823 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:30:17 Download gff for
BS04308.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19160791..19161224 | 390..823 | 100 | <- | Minus |
3R | 19161790..19162039 | 140..389 | 100 | <- | Minus |
3R | 19162116..19162243 | 13..139 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 06:53:51 Download gff for
BS04308.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14986513..14986946 | 390..823 | 100 | <- | Minus |
arm_3R | 14987512..14987761 | 140..389 | 100 | <- | Minus |
arm_3R | 14987838..14987965 | 13..139 | 99 | | Minus |
BS04308.complete Sequence
1334 bp (1334 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634921
> BS04308.complete
GAAGTTATCAGTCGACATGAGTAAAAAACCGCATTCCATAAAAGTTCCCA
CCCAATACAGGGCGACTGCCAAGATTTTGAAGGCGGCACTGGAGCAGCAG
AAGTGCATCAAGACCCTAATATTTGCAGAGAAGCATGCCCGTACACGCTC
TTTGCATACGGTTCTGAAAAAATTTAGCGAAAATCGTGTGGCACTGGAAA
AGGCCATCGAAGAGACAGGACTGCTCAGGGACAATCCCAGTTTTGATCCC
AGTTTGGCCAAGATTCTAGTCACCGAACTGCTGTTTGGCAGGAAGGAGCT
GAACGGCGAAAGCAAACCCGTGCAAACGGTGCGAAGTTACAAGGATCGAC
TGCTAAATTCCATCAGAGATTTCGGTGTCCAGCGAAAAGAACCCAATCCT
CGATATGTGCGCATCAACACAAATCTATACAGCTTGGCGGAGGCCTTGGA
CTACCTGCATAAAAGCGACTGGCGGCGCAAGGAGCTGCCTGCGGACGCCA
GCTATGCGGATTTTCTGACTGCCATCAAATCGCTGGCGGAGAACGAGTTC
ATGACCGATCTGCACGTTGAGGGTGTGCTCATTTTTCCTGCCAAGTGGTC
CAACTACTGGGTCCGCCATCCGTTGGTGCACAGCAAGAGGTTTATACTGC
AGAACAAGGCCACCTGTTTGGCCGCCGAACTACTTGCTCCGCCGTCTGGG
GCCACTGTGCTGGATATGTGCGCAGCTCCCGGTATGAAGACAGTGCACAT
ATGCAATGTGATGCAGAACAAGGGATGCATCTACTCCGTGGAGCAGGACC
ACGTACGCTACAATACGCTGTGCGAAATAACAAAGGATGCTGGTTGCGAT
ATTGTAAAACCCATTTTGGGAGACGCCTTGAACCTAACACCCGAACGCTT
TCCGGACGTAGAGTACATCCTGGTGGACCCTAGTTGCTCTGGCAGCGGAA
TGCAAAACCGCATGACCGTGTGCGACGAGCCGAAGGAGGACAAGCGGCTG
CAAAAGCTGCAGGGTTTGCAAATTAAGATCCTGTCGCACGCGATGGGCGC
CTTTCCGAACGTCAAACGCATTGCCTACTGCACGTGTTCGCTGTGGAAGG
AGGAAAACGAGCAGGTGGTGCAGCGTTGTCTTCAGCTAAATCCATCCTTC
AAGCTGCTCAGCTGCAAGAAGGCCTTGCGCAACAAGTGGCACAATGTGGG
CGACAAGGACTATCCCAATATTGGCAAGAACGTCCTGTATTGCCAGCCGG
ACAGTGATCTTACCGATGGCATCTTCCTGGCCCTTTTCGAGAAACGCCGC
GAGGGCGAAAAGGATTAGAAGCTTTCTAGACCAT
BS04308.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:11:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42358-RA | 1302 | CG42358-PA | 1..1302 | 17..1318 | 6510 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:11:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42358-RA | 1498 | CG42358-RA | 63..1364 | 17..1318 | 6510 | 100 | Plus |
CG42359-RA | 966 | CG5558-RB | 63..435 | 17..389 | 1865 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:11:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19160727..19161226 | 887..388 | 2500 | 100 | Minus |
3R | 32079331 | 3R | 19160233..19160663 | 1318..888 | 2155 | 100 | Minus |
3R | 32079331 | 3R | 19161790..19162039 | 389..140 | 1250 | 100 | Minus |
3R | 32079331 | 3R | 19162116..19162238 | 139..17 | 615 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:11:15 has no hits.
BS04308.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:57:26 Download gff for
BS04308.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5558-RA | 1..1302 | 17..1318 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:33:44 Download gff for
BS04308.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42358-RA | 36..1353 | 13..1331 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:07 Download gff for
BS04308.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42358-RA | 63..1364 | 17..1318 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:57:26 Download gff for
BS04308.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5558-RA | 36..1353 | 13..1331 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:12:45 Download gff for
BS04308.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42358-RA | 63..1364 | 17..1318 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:12:45 Download gff for
BS04308.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19160233..19160663 | 888..1318 | 100 | <- | Minus |
3R | 19160727..19161224 | 390..887 | 100 | <- | Minus |
3R | 19161790..19162039 | 140..389 | 100 | <- | Minus |
3R | 19162116..19162238 | 17..139 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:07 Download gff for
BS04308.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14985955..14986385 | 888..1318 | 100 | <- | Minus |
arm_3R | 14986449..14986946 | 390..887 | 100 | <- | Minus |
arm_3R | 14987512..14987761 | 140..389 | 100 | <- | Minus |
arm_3R | 14987838..14987960 | 17..139 | 100 | | Minus |
BS04308.pep Sequence
Translation from 16 to 1317
> BS04308.pep
MSKKPHSIKVPTQYRATAKILKAALEQQKCIKTLIFAEKHARTRSLHTVL
KKFSENRVALEKAIEETGLLRDNPSFDPSLAKILVTELLFGRKELNGESK
PVQTVRSYKDRLLNSIRDFGVQRKEPNPRYVRINTNLYSLAEALDYLHKS
DWRRKELPADASYADFLTAIKSLAENEFMTDLHVEGVLIFPAKWSNYWVR
HPLVHSKRFILQNKATCLAAELLAPPSGATVLDMCAAPGMKTVHICNVMQ
NKGCIYSVEQDHVRYNTLCEITKDAGCDIVKPILGDALNLTPERFPDVEY
ILVDPSCSGSGMQNRMTVCDEPKEDKRLQKLQGLQIKILSHAMGAFPNVK
RIAYCTCSLWKEENEQVVQRCLQLNPSFKLLSCKKALRNKWHNVGDKDYP
NIGKNVLYCQPDSDLTDGIFLALFEKRREGEKD*
BS04308.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42358-PA | 433 | CG5558-PA | 1..433 | 1..433 | 2279 | 100 | Plus |
CG8545-PA | 891 | CG8545-PA | 417..584 | 209..373 | 158 | 26.9 | Plus |