Clone BS04315 Report

Search the DGRC for BS04315

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:43
Well:15
Vector:pDNR-Dual
Associated Gene/Transcriptfrj-RA
Protein status:BS04315.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04315.3prime Sequence

852 bp (756 high quality bases) assembled on 2005-12-01

> BS04315.3prime
ATGGTCTAGAAAGCTTCTACTGCGCCTTCTCCTTCTCTATTGCGGCGGCG
ATTCCGTCGCCACCAGCTGCTTTCTCTGCCGCGCGCTTCTTTCTACGTTC
GGCCGCTTTTCTCTGGCTGGTGAGGTAAAAGCCTAACGCAGTCATGGCCG
CCCAACTGATGTAGCCAATATGATAGACAGAGCTATAGAACCGCCAGATG
TTGCCAAAGGAGGAGAGCAGGAAGGCCTCGCCCAAGTAGCTGAAGGCGAA
CCACTTAAAGATCCAGAAGATGACATCGATTACCCTGCGGCTGGTGCCGG
TGGCACTCTTGCGCACCAGCTTATCCCACATGTCCTCCAGGGAGACGTAG
AAGGGAGCGCCCATGATGCAGAAGTAGTGTCCCGGCCGGAATCCGTGCCA
GTAGGCAGAGCACAGCAAAGTGGCGCCAGTCCTGTACTTTTTGCTGGGGA
AGAGTTTGTACACATTGACAGCCAACCAATACTGGACGCACACATTCCAG
TGCTTCATGCCCTCGCGGAAGGTCCAGCATCTTTCCACCTCCAGAACCCT
GGTGTTCACGATCGTTGTAAAGTTGTAGGTGTGCTTATCGGCGTCGCGCT
TTAGGTGCTGATAGCGTTTCCGAGGGCCCTCGCCATTGTTGGGATCGGAT
TCATCCGGATAGGCTCCGAAGCCGGCCATTGTGCAGACACATTCGCTGAG
GGTGAGTCCGGTGTAGATGCGAGCGCGGAATGTGAAGAACGTGGGCCACA
CGTACAGCAAACGGTACACAAAGGAGCGATCGTTGAAGAACTCATCACTC
AACGCATAATCCAGTGGCCACATGTAGTTGGTTGGCAGGTATAATGCGCA
GT

BS04315.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:45:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG9526-PB 1470 CG9526-RB 635..1470 852..17 4155 99.8 Minus
CG9526-PA 1470 CG9526-RA 635..1470 852..17 4155 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:24:00
Subject Length Description Subject Range Query Range Score Percent Strand
frj-RA 2097 CG9526-RA 839..1675 852..16 4170 99.9 Minus
frj-RB 2156 CG9526-RB 898..1734 852..16 4170 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:23:59
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6458169..6458586 433..16 2090 100 Minus
2L 23513712 2L 6457540..6457917 808..431 1890 100 Minus
2L 23513712 2L 6457446..6457489 852..809 205 97.7 Minus
Blast to na_te.dros performed on 2015-02-10 19:23:59 has no hits.

BS04315.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:45:15 Download gff for BS04315.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9526-PB 635..1470 17..852 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:05:38 Download gff for BS04315.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9526-PA 635..1470 17..852 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:19:32 Download gff for BS04315.3prime
Subject Subject Range Query Range Percent Splice Strand
frj-RB 898..1742 6..852 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:38:31 Download gff for BS04315.3prime
Subject Subject Range Query Range Percent Splice Strand
frj-RB 898..1742 6..852 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:38:31 Download gff for BS04315.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 6457446..6457489 809..852 97 -> Minus
2L 6457540..6457916 432..808 100 -> Minus
2L 6458171..6458594 6..431 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:19:32 Download gff for BS04315.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6457446..6457489 809..852 97 -> Minus
arm_2L 6457540..6457916 432..808 100 -> Minus
arm_2L 6458171..6458594 6..431 99   Minus

BS04315.5prime Sequence

754 bp (753 high quality bases) assembled on 2005-11-29

> BS04315.5prime
GAAGTTATCAGTCGACATGAGCATCGACGACGTCATCTATGTGATCTGCC
TGCTGGGCTGCATCGGAGCCGGCAGCTATGTGAAGAAGATCGCGGACGAG
GGCCAGCGCAAGCTGGTGTCCACTGGGCTAGGCGTTCTTGTGGTTGTCAT
TGTCTCGGGGCTCCACAGTCTGCACTGCTTTGTTTCCCTGGCACTGGGCA
CGGCCGCCGTGCTTCTCGTGCACCCGAGCAAGGGTCACCTGGTCACGTTT
GCGGTCATGTTTGGCTACCTGGTGTTCTTCCGCATTTTCGACTTCTACTT
CGGCATTCCCGGCCACACGAACATGATACAAATGATACTAACACTAAAGG
TTTCGGGCATTGCCTTCGAGAAGACTGCCGCCTGGAAGCGACTGCAAGCG
CACGACGAGCAAAAGAAGAACGACCAGCGGGATGTGCACCAGGAGAGTCC
AATCGAGATCACCGACTACGATGTGGAATTGCAGAGCCTGAGTGCCGCTG
AGATCCTGCACTACAGCTTCAACTACATCGGAGTTCTTACAGGTCCCTAT
TATCGGTATCGCACATACAGGGACTACTTTGAGATGCCTTTCAAGACCTA
CGCTCCAACTGTTGAAGCCACCCTGGAGAAGCTGAAGTACGCCGTCTTCT
ACTGCGCATTATACCTGGCAACCAACTACATGTGGCCACTGGATTATGCG
TTGAGTGATGAGTTCTTCAACGATCGCTCCTTTGTGTACCGTTTGCTGTA
CGTG

BS04315.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:45:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG9526-PB 1470 CG9526-RB 1..738 17..754 3690 100 Plus
CG9526-PA 1470 CG9526-RA 1..738 17..754 3690 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:31:02
Subject Length Description Subject Range Query Range Score Percent Strand
frj-RA 2097 CG9526-RA 205..942 17..754 3690 100 Plus
frj-RB 2156 CG9526-RB 264..1001 17..754 3690 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:30:55
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6456471..6456682 17..228 1060 100 Plus
2L 23513712 2L 6456919..6457115 348..544 985 100 Plus
2L 23513712 2L 6457335..6457489 540..694 775 100 Plus
2L 23513712 2L 6456742..6456866 227..351 625 100 Plus
2L 23513712 2L 6457540..6457599 695..754 300 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:30:58 has no hits.

BS04315.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:45:16 Download gff for BS04315.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9526-PB 1..738 17..754 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:05:39 Download gff for BS04315.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9526-PA 1..738 17..754 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:42:40 Download gff for BS04315.5prime
Subject Subject Range Query Range Percent Splice Strand
frj-RB 260..1001 9..754 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:52:21 Download gff for BS04315.5prime
Subject Subject Range Query Range Percent Splice Strand
frj-RB 260..1001 9..754 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:52:21 Download gff for BS04315.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 6456467..6456682 9..228 98 -> Plus
2L 6456744..6456864 229..349 100 -> Plus
2L 6456921..6457113 350..542 100 -> Plus
2L 6457338..6457489 543..694 100 -> Plus
2L 6457540..6457599 695..754 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:42:40 Download gff for BS04315.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6456744..6456864 229..349 100 -> Plus
arm_2L 6456467..6456682 9..228 98 -> Plus
arm_2L 6456921..6457113 350..542 100 -> Plus
arm_2L 6457338..6457489 543..694 100 -> Plus
arm_2L 6457540..6457599 695..754 100   Plus

BS04315.complete Sequence

1502 bp (1502 high quality bases) assembled on 2006-02-02

> BS04315.complete
GAAGTTATCAGTCGACATGAGCATCGACGACGTCATCTATGTGATCTGCC
TGCTGGGCTGCATCGGAGCCGGCAGCTATGTGAAGAAGATCGCGGACGAG
GGCCAGCGCAAGCTGGTGTCCACTGGGCTAGGCGTTCTTGTGGTTGTCAT
TGTCTCGGGGCTCCACAGTCTGCACTGCTTTGTTTCCCTGGCACTGGGCA
CGGCCGCCGTGCTTCTCGTGCACCCGAGCAAGGGTCACCTGGTCACGTTT
GCGGTCATGTTTGGCTACCTGGTGTTCTTCCGCATTTTCGACTTCTACTT
CGGCATTCCCGGCCACACGAACATGATACAAATGATACTAACACTAAAGG
TTTCGGGCATTGCCTTCGAGAAGACTGCCGCCTGGAAGCGACTGCAAGCG
CACGACGAGCAAAAGAAGAACGACCAGCGGGATGTGCACCAGGAGAGTCC
AATCGAGATCACCGACTACGATGTGGAATTGCAGAGCCTGAGTGCCGCTG
AGATCCTGCACTACAGCTTCAACTACATCGGAGTTCTTACAGGTCCCTAT
TATCGGTATCGCACATACAGGGACTACTTTGAGATGCCTTTCAAGACCTA
CGCTCCAACTGTTGAAGCCACCCTGGAGAAGCTGAAGTACGCCGTCTTCT
ACTGCGCATTATACCTGGCAACCAACTACATGTGGCCACTGGATTATGCG
TTGAGTGATGAGTTCTTCAACGATCGCTCCTTTGTGTACCGTTTGCTGTA
CGTGTGGCCCACGTTCTTCACATTCCGCGCTCGCATCTACACCGGACTCA
CCCTCAGCGAATGTGTCTGCACAATGGCCGGCTTCGGAGCCTATCCGGAT
GAATCCGATCCCAACAATGGCGAGGGCCCTCGGAAACGCTATCAGCACCT
AAAGCGCGACGCCGATAAGCACACCTACAACTTTACAACGATCGTGAACA
CCAGGGTTCTGGAGGTGGAAAGATGCTGGACCTTCCGCGAGGGCATGAAG
CACTGGAATGTGTGCGTCCAGTATTGGTTGGCTGTCAATGTGTACAAACT
CTTCCCCAGCAAAAAGTACAGGACTGGCGCCACTTTGCTGTGCTCTGCCT
ACTGGCACGGATTCCGGCCGGGACACTACTTCTGCATCATGGGCGCTCCC
TTCTACGTCTCCCTGGAGGACATGTGGGATAAGCTGGTGCGCAAGAGTGC
CACCGGCACCAGCCGCAGGGTAATCGATGTCATCTTCTGGATCTTTAAGT
GGTTCGCCTTCAGCTACTTGGGCGAGGCCTTCCTGCTCTCCTCCTTTGGC
AACATCTGGCGGTTCTATAGCTCTGTCTATCATATTGGCTACATCAGTTG
GGCGGCCATGACTGCGTTAGGCTTTTACCTCACCAGCCAGAGAAAAGCGG
CCGAACGTAGAAAGAAGCGCGCGGCAGAGAAAGCAGCTGGTGGCGACGGA
ATCGCCGCCGCAATAGAGAAGGAGAAGGCGCAGTAGAAGCTTTCTAGACC
AT

BS04315.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:08:44
Subject Length Description Subject Range Query Range Score Percent Strand
frj-RA 1470 CG9526-PA 1..1470 17..1486 7350 100 Plus
frj-RB 1470 CG9526-PB 1..1470 17..1486 7350 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:08:45
Subject Length Description Subject Range Query Range Score Percent Strand
frj-RA 2097 CG9526-RA 205..1675 17..1487 7355 100 Plus
frj-RB 2156 CG9526-RB 264..1734 17..1487 7355 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:08:42
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6458169..6458586 1070..1487 2090 100 Plus
2L 23513712 2L 6457540..6457917 695..1072 1890 100 Plus
2L 23513712 2L 6456471..6456682 17..228 1060 100 Plus
2L 23513712 2L 6456919..6457115 348..544 985 100 Plus
2L 23513712 2L 6457335..6457489 540..694 775 100 Plus
2L 23513712 2L 6456742..6456866 227..351 625 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:08:43 has no hits.

BS04315.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:57:27 Download gff for BS04315.complete
Subject Subject Range Query Range Percent Splice Strand
CG9526-RA 1..1470 17..1486 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:33:46 Download gff for BS04315.complete
Subject Subject Range Query Range Percent Splice Strand
CG9526-RA 174..1656 9..1497 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:48:41 Download gff for BS04315.complete
Subject Subject Range Query Range Percent Splice Strand
frj-RB 264..1733 17..1486 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:57:28 Download gff for BS04315.complete
Subject Subject Range Query Range Percent Splice Strand
CG9526-RA 174..1656 9..1497 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:07:19 Download gff for BS04315.complete
Subject Subject Range Query Range Percent Splice Strand
frj-RB 264..1733 17..1486 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:07:19 Download gff for BS04315.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6456471..6456682 17..228 100 -> Plus
2L 6456744..6456864 229..349 100 -> Plus
2L 6456921..6457113 350..542 100 -> Plus
2L 6457338..6457489 543..694 100 -> Plus
2L 6457540..6457916 695..1071 100 -> Plus
2L 6458171..6458585 1072..1486 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:48:41 Download gff for BS04315.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6456744..6456864 229..349 100 -> Plus
arm_2L 6456471..6456682 17..228 100 -> Plus
arm_2L 6456921..6457113 350..542 100 -> Plus
arm_2L 6457338..6457489 543..694 100 -> Plus
arm_2L 6457540..6457916 695..1071 100 -> Plus
arm_2L 6458171..6458585 1072..1486 100   Plus

BS04315.pep Sequence

Translation from 16 to 1485

> BS04315.pep
MSIDDVIYVICLLGCIGAGSYVKKIADEGQRKLVSTGLGVLVVVIVSGLH
SLHCFVSLALGTAAVLLVHPSKGHLVTFAVMFGYLVFFRIFDFYFGIPGH
TNMIQMILTLKVSGIAFEKTAAWKRLQAHDEQKKNDQRDVHQESPIEITD
YDVELQSLSAAEILHYSFNYIGVLTGPYYRYRTYRDYFEMPFKTYAPTVE
ATLEKLKYAVFYCALYLATNYMWPLDYALSDEFFNDRSFVYRLLYVWPTF
FTFRARIYTGLTLSECVCTMAGFGAYPDESDPNNGEGPRKRYQHLKRDAD
KHTYNFTTIVNTRVLEVERCWTFREGMKHWNVCVQYWLAVNVYKLFPSKK
YRTGATLLCSAYWHGFRPGHYFCIMGAPFYVSLEDMWDKLVRKSATGTSR
RVIDVIFWIFKWFAFSYLGEAFLLSSFGNIWRFYSSVYHIGYISWAAMTA
LGFYLTSQRKAAERRKKRAAEKAAGGDGIAAAIEKEKAQ*

BS04315.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:12:23
Subject Length Description Subject Range Query Range Score Percent Strand
frj-PA 489 CG9526-PA 1..489 1..489 2622 100 Plus
frj-PB 489 CG9526-PB 1..489 1..489 2622 100 Plus
oys-PE 722 CG18445-PE 28..511 1..488 218 20.5 Plus
oys-PB 722 CG18445-PB 28..511 1..488 218 20.5 Plus
oys-PA 722 CG18445-PA 28..511 1..488 218 20.5 Plus