Clone Sequence Records
BS04315.3prime Sequence
852 bp (756 high quality bases) assembled on 2005-12-01
> BS04315.3prime
ATGGTCTAGAAAGCTTCTACTGCGCCTTCTCCTTCTCTATTGCGGCGGCG
ATTCCGTCGCCACCAGCTGCTTTCTCTGCCGCGCGCTTCTTTCTACGTTC
GGCCGCTTTTCTCTGGCTGGTGAGGTAAAAGCCTAACGCAGTCATGGCCG
CCCAACTGATGTAGCCAATATGATAGACAGAGCTATAGAACCGCCAGATG
TTGCCAAAGGAGGAGAGCAGGAAGGCCTCGCCCAAGTAGCTGAAGGCGAA
CCACTTAAAGATCCAGAAGATGACATCGATTACCCTGCGGCTGGTGCCGG
TGGCACTCTTGCGCACCAGCTTATCCCACATGTCCTCCAGGGAGACGTAG
AAGGGAGCGCCCATGATGCAGAAGTAGTGTCCCGGCCGGAATCCGTGCCA
GTAGGCAGAGCACAGCAAAGTGGCGCCAGTCCTGTACTTTTTGCTGGGGA
AGAGTTTGTACACATTGACAGCCAACCAATACTGGACGCACACATTCCAG
TGCTTCATGCCCTCGCGGAAGGTCCAGCATCTTTCCACCTCCAGAACCCT
GGTGTTCACGATCGTTGTAAAGTTGTAGGTGTGCTTATCGGCGTCGCGCT
TTAGGTGCTGATAGCGTTTCCGAGGGCCCTCGCCATTGTTGGGATCGGAT
TCATCCGGATAGGCTCCGAAGCCGGCCATTGTGCAGACACATTCGCTGAG
GGTGAGTCCGGTGTAGATGCGAGCGCGGAATGTGAAGAACGTGGGCCACA
CGTACAGCAAACGGTACACAAAGGAGCGATCGTTGAAGAACTCATCACTC
AACGCATAATCCAGTGGCCACATGTAGTTGGTTGGCAGGTATAATGCGCA
GT
BS04315.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:45:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9526-PB | 1470 | CG9526-RB | 635..1470 | 852..17 | 4155 | 99.8 | Minus |
CG9526-PA | 1470 | CG9526-RA | 635..1470 | 852..17 | 4155 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:24:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
frj-RA | 2097 | CG9526-RA | 839..1675 | 852..16 | 4170 | 99.9 | Minus |
frj-RB | 2156 | CG9526-RB | 898..1734 | 852..16 | 4170 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:23:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6458169..6458586 | 433..16 | 2090 | 100 | Minus |
2L | 23513712 | 2L | 6457540..6457917 | 808..431 | 1890 | 100 | Minus |
2L | 23513712 | 2L | 6457446..6457489 | 852..809 | 205 | 97.7 | Minus |
Blast to na_te.dros performed on 2015-02-10 19:23:59 has no hits.
BS04315.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:45:15 Download gff for
BS04315.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9526-PB | 635..1470 | 17..852 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:05:38 Download gff for
BS04315.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9526-PA | 635..1470 | 17..852 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:19:32 Download gff for
BS04315.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
frj-RB | 898..1742 | 6..852 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:38:31 Download gff for
BS04315.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
frj-RB | 898..1742 | 6..852 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:38:31 Download gff for
BS04315.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6457446..6457489 | 809..852 | 97 | -> | Minus |
2L | 6457540..6457916 | 432..808 | 100 | -> | Minus |
2L | 6458171..6458594 | 6..431 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:19:32 Download gff for
BS04315.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6457446..6457489 | 809..852 | 97 | -> | Minus |
arm_2L | 6457540..6457916 | 432..808 | 100 | -> | Minus |
arm_2L | 6458171..6458594 | 6..431 | 99 | | Minus |
BS04315.5prime Sequence
754 bp (753 high quality bases) assembled on 2005-11-29
> BS04315.5prime
GAAGTTATCAGTCGACATGAGCATCGACGACGTCATCTATGTGATCTGCC
TGCTGGGCTGCATCGGAGCCGGCAGCTATGTGAAGAAGATCGCGGACGAG
GGCCAGCGCAAGCTGGTGTCCACTGGGCTAGGCGTTCTTGTGGTTGTCAT
TGTCTCGGGGCTCCACAGTCTGCACTGCTTTGTTTCCCTGGCACTGGGCA
CGGCCGCCGTGCTTCTCGTGCACCCGAGCAAGGGTCACCTGGTCACGTTT
GCGGTCATGTTTGGCTACCTGGTGTTCTTCCGCATTTTCGACTTCTACTT
CGGCATTCCCGGCCACACGAACATGATACAAATGATACTAACACTAAAGG
TTTCGGGCATTGCCTTCGAGAAGACTGCCGCCTGGAAGCGACTGCAAGCG
CACGACGAGCAAAAGAAGAACGACCAGCGGGATGTGCACCAGGAGAGTCC
AATCGAGATCACCGACTACGATGTGGAATTGCAGAGCCTGAGTGCCGCTG
AGATCCTGCACTACAGCTTCAACTACATCGGAGTTCTTACAGGTCCCTAT
TATCGGTATCGCACATACAGGGACTACTTTGAGATGCCTTTCAAGACCTA
CGCTCCAACTGTTGAAGCCACCCTGGAGAAGCTGAAGTACGCCGTCTTCT
ACTGCGCATTATACCTGGCAACCAACTACATGTGGCCACTGGATTATGCG
TTGAGTGATGAGTTCTTCAACGATCGCTCCTTTGTGTACCGTTTGCTGTA
CGTG
BS04315.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:45:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9526-PB | 1470 | CG9526-RB | 1..738 | 17..754 | 3690 | 100 | Plus |
CG9526-PA | 1470 | CG9526-RA | 1..738 | 17..754 | 3690 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:31:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
frj-RA | 2097 | CG9526-RA | 205..942 | 17..754 | 3690 | 100 | Plus |
frj-RB | 2156 | CG9526-RB | 264..1001 | 17..754 | 3690 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:30:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6456471..6456682 | 17..228 | 1060 | 100 | Plus |
2L | 23513712 | 2L | 6456919..6457115 | 348..544 | 985 | 100 | Plus |
2L | 23513712 | 2L | 6457335..6457489 | 540..694 | 775 | 100 | Plus |
2L | 23513712 | 2L | 6456742..6456866 | 227..351 | 625 | 100 | Plus |
2L | 23513712 | 2L | 6457540..6457599 | 695..754 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:30:58 has no hits.
BS04315.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:45:16 Download gff for
BS04315.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9526-PB | 1..738 | 17..754 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:05:39 Download gff for
BS04315.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9526-PA | 1..738 | 17..754 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:42:40 Download gff for
BS04315.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
frj-RB | 260..1001 | 9..754 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:52:21 Download gff for
BS04315.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
frj-RB | 260..1001 | 9..754 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:52:21 Download gff for
BS04315.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6456467..6456682 | 9..228 | 98 | -> | Plus |
2L | 6456744..6456864 | 229..349 | 100 | -> | Plus |
2L | 6456921..6457113 | 350..542 | 100 | -> | Plus |
2L | 6457338..6457489 | 543..694 | 100 | -> | Plus |
2L | 6457540..6457599 | 695..754 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:42:40 Download gff for
BS04315.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6456744..6456864 | 229..349 | 100 | -> | Plus |
arm_2L | 6456467..6456682 | 9..228 | 98 | -> | Plus |
arm_2L | 6456921..6457113 | 350..542 | 100 | -> | Plus |
arm_2L | 6457338..6457489 | 543..694 | 100 | -> | Plus |
arm_2L | 6457540..6457599 | 695..754 | 100 | | Plus |
BS04315.complete Sequence
1502 bp (1502 high quality bases) assembled on 2006-02-02
> BS04315.complete
GAAGTTATCAGTCGACATGAGCATCGACGACGTCATCTATGTGATCTGCC
TGCTGGGCTGCATCGGAGCCGGCAGCTATGTGAAGAAGATCGCGGACGAG
GGCCAGCGCAAGCTGGTGTCCACTGGGCTAGGCGTTCTTGTGGTTGTCAT
TGTCTCGGGGCTCCACAGTCTGCACTGCTTTGTTTCCCTGGCACTGGGCA
CGGCCGCCGTGCTTCTCGTGCACCCGAGCAAGGGTCACCTGGTCACGTTT
GCGGTCATGTTTGGCTACCTGGTGTTCTTCCGCATTTTCGACTTCTACTT
CGGCATTCCCGGCCACACGAACATGATACAAATGATACTAACACTAAAGG
TTTCGGGCATTGCCTTCGAGAAGACTGCCGCCTGGAAGCGACTGCAAGCG
CACGACGAGCAAAAGAAGAACGACCAGCGGGATGTGCACCAGGAGAGTCC
AATCGAGATCACCGACTACGATGTGGAATTGCAGAGCCTGAGTGCCGCTG
AGATCCTGCACTACAGCTTCAACTACATCGGAGTTCTTACAGGTCCCTAT
TATCGGTATCGCACATACAGGGACTACTTTGAGATGCCTTTCAAGACCTA
CGCTCCAACTGTTGAAGCCACCCTGGAGAAGCTGAAGTACGCCGTCTTCT
ACTGCGCATTATACCTGGCAACCAACTACATGTGGCCACTGGATTATGCG
TTGAGTGATGAGTTCTTCAACGATCGCTCCTTTGTGTACCGTTTGCTGTA
CGTGTGGCCCACGTTCTTCACATTCCGCGCTCGCATCTACACCGGACTCA
CCCTCAGCGAATGTGTCTGCACAATGGCCGGCTTCGGAGCCTATCCGGAT
GAATCCGATCCCAACAATGGCGAGGGCCCTCGGAAACGCTATCAGCACCT
AAAGCGCGACGCCGATAAGCACACCTACAACTTTACAACGATCGTGAACA
CCAGGGTTCTGGAGGTGGAAAGATGCTGGACCTTCCGCGAGGGCATGAAG
CACTGGAATGTGTGCGTCCAGTATTGGTTGGCTGTCAATGTGTACAAACT
CTTCCCCAGCAAAAAGTACAGGACTGGCGCCACTTTGCTGTGCTCTGCCT
ACTGGCACGGATTCCGGCCGGGACACTACTTCTGCATCATGGGCGCTCCC
TTCTACGTCTCCCTGGAGGACATGTGGGATAAGCTGGTGCGCAAGAGTGC
CACCGGCACCAGCCGCAGGGTAATCGATGTCATCTTCTGGATCTTTAAGT
GGTTCGCCTTCAGCTACTTGGGCGAGGCCTTCCTGCTCTCCTCCTTTGGC
AACATCTGGCGGTTCTATAGCTCTGTCTATCATATTGGCTACATCAGTTG
GGCGGCCATGACTGCGTTAGGCTTTTACCTCACCAGCCAGAGAAAAGCGG
CCGAACGTAGAAAGAAGCGCGCGGCAGAGAAAGCAGCTGGTGGCGACGGA
ATCGCCGCCGCAATAGAGAAGGAGAAGGCGCAGTAGAAGCTTTCTAGACC
AT
BS04315.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:08:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
frj-RA | 1470 | CG9526-PA | 1..1470 | 17..1486 | 7350 | 100 | Plus |
frj-RB | 1470 | CG9526-PB | 1..1470 | 17..1486 | 7350 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:08:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
frj-RA | 2097 | CG9526-RA | 205..1675 | 17..1487 | 7355 | 100 | Plus |
frj-RB | 2156 | CG9526-RB | 264..1734 | 17..1487 | 7355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:08:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6458169..6458586 | 1070..1487 | 2090 | 100 | Plus |
2L | 23513712 | 2L | 6457540..6457917 | 695..1072 | 1890 | 100 | Plus |
2L | 23513712 | 2L | 6456471..6456682 | 17..228 | 1060 | 100 | Plus |
2L | 23513712 | 2L | 6456919..6457115 | 348..544 | 985 | 100 | Plus |
2L | 23513712 | 2L | 6457335..6457489 | 540..694 | 775 | 100 | Plus |
2L | 23513712 | 2L | 6456742..6456866 | 227..351 | 625 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:08:43 has no hits.
BS04315.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:57:27 Download gff for
BS04315.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9526-RA | 1..1470 | 17..1486 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:33:46 Download gff for
BS04315.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9526-RA | 174..1656 | 9..1497 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:48:41 Download gff for
BS04315.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
frj-RB | 264..1733 | 17..1486 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:57:28 Download gff for
BS04315.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9526-RA | 174..1656 | 9..1497 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:07:19 Download gff for
BS04315.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
frj-RB | 264..1733 | 17..1486 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:07:19 Download gff for
BS04315.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6456471..6456682 | 17..228 | 100 | -> | Plus |
2L | 6456744..6456864 | 229..349 | 100 | -> | Plus |
2L | 6456921..6457113 | 350..542 | 100 | -> | Plus |
2L | 6457338..6457489 | 543..694 | 100 | -> | Plus |
2L | 6457540..6457916 | 695..1071 | 100 | -> | Plus |
2L | 6458171..6458585 | 1072..1486 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:48:41 Download gff for
BS04315.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6456744..6456864 | 229..349 | 100 | -> | Plus |
arm_2L | 6456471..6456682 | 17..228 | 100 | -> | Plus |
arm_2L | 6456921..6457113 | 350..542 | 100 | -> | Plus |
arm_2L | 6457338..6457489 | 543..694 | 100 | -> | Plus |
arm_2L | 6457540..6457916 | 695..1071 | 100 | -> | Plus |
arm_2L | 6458171..6458585 | 1072..1486 | 100 | | Plus |
BS04315.pep Sequence
Translation from 16 to 1485
> BS04315.pep
MSIDDVIYVICLLGCIGAGSYVKKIADEGQRKLVSTGLGVLVVVIVSGLH
SLHCFVSLALGTAAVLLVHPSKGHLVTFAVMFGYLVFFRIFDFYFGIPGH
TNMIQMILTLKVSGIAFEKTAAWKRLQAHDEQKKNDQRDVHQESPIEITD
YDVELQSLSAAEILHYSFNYIGVLTGPYYRYRTYRDYFEMPFKTYAPTVE
ATLEKLKYAVFYCALYLATNYMWPLDYALSDEFFNDRSFVYRLLYVWPTF
FTFRARIYTGLTLSECVCTMAGFGAYPDESDPNNGEGPRKRYQHLKRDAD
KHTYNFTTIVNTRVLEVERCWTFREGMKHWNVCVQYWLAVNVYKLFPSKK
YRTGATLLCSAYWHGFRPGHYFCIMGAPFYVSLEDMWDKLVRKSATGTSR
RVIDVIFWIFKWFAFSYLGEAFLLSSFGNIWRFYSSVYHIGYISWAAMTA
LGFYLTSQRKAAERRKKRAAEKAAGGDGIAAAIEKEKAQ*
BS04315.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:12:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
frj-PA | 489 | CG9526-PA | 1..489 | 1..489 | 2622 | 100 | Plus |
frj-PB | 489 | CG9526-PB | 1..489 | 1..489 | 2622 | 100 | Plus |
oys-PE | 722 | CG18445-PE | 28..511 | 1..488 | 218 | 20.5 | Plus |
oys-PB | 722 | CG18445-PB | 28..511 | 1..488 | 218 | 20.5 | Plus |
oys-PA | 722 | CG18445-PA | 28..511 | 1..488 | 218 | 20.5 | Plus |