Clone BS04324 Report

Search the DGRC for BS04324

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:43
Well:24
Vector:pDNR-Dual
Associated Gene/TranscriptCG8460-RA
Protein status:BS04324.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04324.3prime Sequence

935 bp (816 high quality bases) assembled on 2005-12-01

> BS04324.3prime
ATGGTCTAGAAAGCTTCTAGAAGAGATCGTAAAAATAGTTTAGGCCTTGG
CCAAGTTCCCAGATTGAAATGCCAGTGCCCAGTTCCTGGGCGAGCTTTAT
TCGCTCGTTTATGGAATAGAGAGTGGGATAAAAGACAATGTGGCGACCGT
CATCGTTTTTGATTTCAAAGAAATTTTCCACATCCCGCTCATCGTAAGTT
AGGTGCTTCTTCACATGCCTGACTAGATCCAAGTACTGGGAGAAGGTGAT
GGGTCCACCTCCATCGGGCGTGTAATCATTCCCGTACATATTCAGTCCCA
ACAGAATTTTAGCCCTCTTAGCCGTCATATCAGCGCAACCTTCTGGAGCT
ATTGTCTCCACAGCCTTACGGACGAAATATAATGGTGCATTTGCTCCGGG
ACGCTGCACGCTGGAGAAGTCGTAAGTCATCAGAGAGAAGGCGTATATGT
GCTTGAACAGCTTGTCCATGTGCTTTTCTCCAAAAAGGTGGCCTGTTTCC
TTGCGGAATGGAGGAATGACCAAAATGAGTCGCAGCTGTTGCTTTTGTAG
TTCTTTGGCCATTTGCAAAACCAGTGTGTACAGAATTTTGTCATCTATGC
GTCCAGCTAGCTGGGACCACACCTCCAGGACGAGTCCATCGAAGCCATTA
TCCTTGCAGCACTTGATCAGCACGTCGTTGACTTTCGTCCTCTCCTGNGC
GTCGCTAAGCAAGAGCTTAATGTCCCGATCAGTGAAGTGATCGAATATAA
AACGGGGAAACACTTTAACCGTTCGCTGATTGTGCACCTGTTTACCCTTT
CTCCGGACATCGGTTAGCCCACCCGCATCGATGTCATGGGTTCCGGCTAC
GGCATAACGATCTCCCTGCTTAACAATCTGCAGCCAAACCGGCGAGATAA
TGTCGAACTTCTTGGCAAATATCTTAGCCACATCA

BS04324.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:45:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG8460-PA 1209 CG8460-RA 291..1209 935..17 4551 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:32:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG8460-RA 1368 CG8460-RA 391..1309 935..17 4569 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:32:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8198148..8198548 559..159 2005 100 Minus
2L 23513712 2L 8197877..8198082 764..559 1019 99.5 Minus
2L 23513712 2L 8197649..8197821 935..763 850 99.4 Minus
2L 23513712 2L 8198609..8198754 162..17 715 99.3 Minus
Blast to na_te.dros performed on 2015-02-12 04:32:25 has no hits.

BS04324.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:45:23 Download gff for BS04324.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8460-PA 292..1209 17..934 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:05:49 Download gff for BS04324.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8460-PA 292..1209 17..934 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:05:58 Download gff for BS04324.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8460-RA 392..1314 13..934 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:57:15 Download gff for BS04324.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8460-RA 392..1314 13..934 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:57:15 Download gff for BS04324.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 8197879..8198082 559..762 99 -> Minus
2L 8197650..8197821 763..934 99 -> Minus
2L 8198149..8198548 159..558 100 -> Minus
2L 8198613..8198759 13..158 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:05:58 Download gff for BS04324.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8197650..8197821 763..934 99 -> Minus
arm_2L 8197879..8198082 559..762 99 -> Minus
arm_2L 8198149..8198548 159..558 100 -> Minus
arm_2L 8198613..8198759 13..158 98   Minus

BS04324.5prime Sequence

888 bp (759 high quality bases) assembled on 2005-11-29

> BS04324.5prime
GAAGTTATCAGTCGACATGCGTGCGCCTGATGCGCTCCTGCTCCGCGTCG
CTCTCCTGCTTCTACTGCTGACCACCGTCCGCGGAACCCTCGCCCCGGAC
AGCCACAAATCGAAGAGCAAGACCAAGGAGAGTGCTCTGCGTGGCGGTCC
GCAAGACCAAGATGTTTTCGATCTGGGCTTGGTTAGTCCCGAGCCCCTGG
CCAAGGATATCGTGAGCAATCATCGCGGGTACTTCAAGGAGACGGGATTG
CGACGCTTCAATGGCACCACCTTGGGCTATGTGACTCCATGGAACTCGCA
TGGCTATGATGTGGCTAAGATATTTGCCAAGAAGTTCGACATTATCTCGC
CGGTTTGGCTGCAGATTGTTAAGCAGGGAGATCGTTATGCCGTAGCCGGA
ACCCATGACATCGATGCGGGTTGGCTAACCGATGTCCGGAGAAAGGGTAA
ACAGGTGCACAATCAGCGAACGGTTAAAGTGTTTCCCCGTTTTATATTCG
ATCACTTCACTGATCGGGACATTAAGCTCTTGCTTAGCGACGCCCAGGAG
AGGACGAAAGTCAACGACGTGCTGATCAAGTGCTGCAAGGATAATGGCTT
CGATGGACTCGTCCTGGAGGTGTGGTCCCAGCTAGCTGGACGCATAGATG
ACAAAATTCTGTACACACTGGTTTTGCAAATGGCCAAAGAACTACAAAAG
CAACAGCTGCGACTCATTTTGGTCATTCCTCCATTCCGCAAGGAAACAGG
CCACCTTTTTGGAGAAAAGCACATGGACAAGCTGTTCAAGCACATATACG
CCTTCTCTCTGATGACTTACGACTTCTCCAGCGTGCAGCGTCCCGGAGCA
AATGCACCATTATATTTCGTCCGTAAGGCTGTGGAGAC

BS04324.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:45:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG8460-PA 1209 CG8460-RA 1..872 17..888 4360 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:32:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG8460-RA 1368 CG8460-RA 95..972 11..888 4375 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:32:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8197287..8197565 11..289 1380 99.6 Plus
2L 23513712 2L 8197877..8198082 478..683 1030 100 Plus
2L 23513712 2L 8198148..8198353 683..888 1030 100 Plus
2L 23513712 2L 8197632..8197821 290..479 950 100 Plus
Blast to na_te.dros performed on 2015-02-10 03:32:20 has no hits.

BS04324.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:45:24 Download gff for BS04324.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8460-PA 1..872 17..888 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:05:50 Download gff for BS04324.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8460-PA 1..872 17..888 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:47:13 Download gff for BS04324.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8460-RA 92..972 8..888 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:17:08 Download gff for BS04324.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8460-RA 92..972 8..888 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:17:08 Download gff for BS04324.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8197284..8197565 8..289 99 -> Plus
2L 8197632..8197821 290..479 100 -> Plus
2L 8197879..8198082 480..683 100 -> Plus
2L 8198149..8198353 684..888 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:47:13 Download gff for BS04324.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8197284..8197565 8..289 99 -> Plus
arm_2L 8197632..8197821 290..479 100 -> Plus
arm_2L 8197879..8198082 480..683 100 -> Plus
arm_2L 8198149..8198353 684..888 100   Plus

BS04324.complete Sequence

1241 bp (1241 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634922

> BS04324.complete
GAAGTTATCAGTCGACATGCGTGCGCCTGATGCGCTCCTGCTCCGCGTCG
CTCTCCTGCTTCTACTGCTGACCACCGTCCGCGGAACCCTCGCCCCGGAC
AGCCACAAATCGAAGAGCAAGACCAAGGAGAGTGCTCTGCGTGGCGGTCC
GCAAGACCAAGATGTTTTCGATCTGGGCTTGGTTAGTCCCGAGCCCCTGG
CCAAGGATATCGTGAGCAATCATCGCGGGTACTTCAAGGAGACGGGATTG
CGACGCTTCAATGGCACCACCTTGGGCTATGTGACTCCATGGAACTCGCA
TGGCTATGATGTGGCTAAGATATTTGCCAAGAAGTTCGACATTATCTCGC
CGGTTTGGCTGCAGATTGTTAAGCAGGGAGATCGTTATGCCGTAGCCGGA
ACCCATGACATCGATGCGGGTTGGCTAACCGATGTCCGGAGAAAGGGTAA
ACAGGTGCACAATCAGCGAACGGTTAAAGTGTTTCCCCGTTTTATATTCG
ATCACTTCACTGATCGGGACATTAAGCTCTTGCTTAGCGACGCCCAGGAG
AGGACGAAAGTCAACGACGTGCTGATCAAGTGCTGCAAGGATAATGGCTT
CGATGGACTCGTCCTGGAGGTGTGGTCCCAGCTAGCTGGACGCATAGATG
ACAAAATTCTGTACACACTGGTTTTGCAAATGGCCAAAGAACTACAAAAG
CAACAGCTGCGACTCATTTTGGTCATTCCTCCATTCCGCAAGGAAACAGG
CCACCTTTTTGGAGAAAAGCACATGGACAAGCTGTTCAAGCACATATACG
CCTTCTCTCTGATGACTTACGACTTCTCCAGCGTGCAGCGTCCCGGAGCA
AATGCACCATTATATTTCGTCCGTAAGGCTGTGGAGACAATAGCTCCAGA
AGGTTGCGCTGATATGACGGCTAAGAGGGCTAAAATTCTGTTGGGACTGA
ATATGTACGGGAATGATTACACGCCCGATGGAGGTGGACCCATCACCTTC
TCCCAGTACTTGGATCTAGTCAGGCATGTGAAGAAGCACCTAACTTACGA
TGAGCGGGATGTGGAAAATTTCTTTGAAATCAAAAACGATGACGGTCGCC
ACATTGTCTTTTATCCCACTCTCTATTCCATAAACGAGCGAATAAAGCTC
GCCCAGGAACTGGGCACTGGCATTTCAATCTGGGAACTTGGCCAAGGCCT
AAACTATTTTTACGATCTCTTCTAGAAGCTTTCTAGACCAT

BS04324.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:40:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG8460-RA 1209 CG8460-PA 1..1209 17..1225 6045 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:40:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG8460-RA 1368 CG8460-RA 95..1309 11..1225 6060 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:40:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8198148..8198548 683..1083 2005 100 Plus
2L 23513712 2L 8197287..8197565 11..289 1380 99.6 Plus
2L 23513712 2L 8197877..8198082 478..683 1030 100 Plus
2L 23513712 2L 8197632..8197821 290..479 950 100 Plus
2L 23513712 2L 8198609..8198754 1080..1225 715 99.3 Plus
Blast to na_te.dros performed on 2014-11-27 20:40:48 has no hits.

BS04324.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:57:15 Download gff for BS04324.complete
Subject Subject Range Query Range Percent Splice Strand
CG8460-RA 1..1209 17..1225 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:33:30 Download gff for BS04324.complete
Subject Subject Range Query Range Percent Splice Strand
CG8460-RA 89..1311 8..1229 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:12:53 Download gff for BS04324.complete
Subject Subject Range Query Range Percent Splice Strand
CG8460-RA 101..1309 17..1225 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:57:15 Download gff for BS04324.complete
Subject Subject Range Query Range Percent Splice Strand
CG8460-RA 89..1311 8..1229 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:26:12 Download gff for BS04324.complete
Subject Subject Range Query Range Percent Splice Strand
CG8460-RA 101..1309 17..1225 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:26:12 Download gff for BS04324.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8198149..8198548 684..1083 100 -> Plus
2L 8198613..8198754 1084..1225 100   Plus
2L 8197293..8197565 17..289 100 -> Plus
2L 8197632..8197821 290..479 100 -> Plus
2L 8197879..8198082 480..683 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:12:53 Download gff for BS04324.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8197293..8197565 17..289 100 -> Plus
arm_2L 8197632..8197821 290..479 100 -> Plus
arm_2L 8197879..8198082 480..683 100 -> Plus
arm_2L 8198149..8198548 684..1083 100 -> Plus
arm_2L 8198613..8198754 1084..1225 100   Plus

BS04324.pep Sequence

Translation from 16 to 1224

> BS04324.pep
MRAPDALLLRVALLLLLLTTVRGTLAPDSHKSKSKTKESALRGGPQDQDV
FDLGLVSPEPLAKDIVSNHRGYFKETGLRRFNGTTLGYVTPWNSHGYDVA
KIFAKKFDIISPVWLQIVKQGDRYAVAGTHDIDAGWLTDVRRKGKQVHNQ
RTVKVFPRFIFDHFTDRDIKLLLSDAQERTKVNDVLIKCCKDNGFDGLVL
EVWSQLAGRIDDKILYTLVLQMAKELQKQQLRLILVIPPFRKETGHLFGE
KHMDKLFKHIYAFSLMTYDFSSVQRPGANAPLYFVRKAVETIAPEGCADM
TAKRAKILLGLNMYGNDYTPDGGGPITFSQYLDLVRHVKKHLTYDERDVE
NFFEIKNDDGRHIVFYPTLYSINERIKLAQELGTGISIWELGQGLNYFYD
LF*

BS04324.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:43:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG8460-PA 402 CG8460-PA 1..402 1..402 2112 100 Plus