Clone BS04341 Report

Search the DGRC for BS04341

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:43
Well:41
Vector:pDNR-Dual
Associated Gene/TranscriptSep2-RA
Protein status:BS04341.pep: full length peptide match
Sequenced Size:1292

Clone Sequence Records

BS04341.3prime Sequence

447 bp (422 high quality bases) assembled on 2005-12-01

> BS04341.3prime
ATGGTCTAGAAAGCTTCTACTTCTTCTTGCTCTTGCCGAGGGTGAGCGTG
TGGTGGGCGGTGGCCAACTGCTGCTTGCGCCGCTGGAAGTCAAGGTAGTC
CTCCTCGAGCGCCTTGCGCGACTCTTCCAGCTTGCGCTTCTCCTCGGCGT
GATCCCGCTTTAGCTTCTCGAACTTGGCGTGCAGGTCCTTCTCGCTCTCC
TTCAGCTCGGCCTCCTTCTCCTTAACGCGCTGCACGAACATCTGACGAAC
CTCCTCCTCCTTGGACTGCAGCTCGGCCAAATGGTTGGAGCGCTTTGCCT
CGAACGTCTGCTGGAACGAGATGGGCTTGTTGTCGCTGTCCACATCGCTG
AAGCCCATTTGCTCCAGCCTCTTCTGGCGATACAGCTCGTAGTGGCGCGT
GTGTGTCTTTTCGCGCATATCCTCCATGTTGGTGCGAATGAACATCT

BS04341.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:46:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG4173-PA 1260 Sep2-RA 830..1260 447..17 2130 99.7 Minus
CG2916-PA 1269 Sep5-RA 839..902 447..384 145 89 Minus
CG2916-PB 1269 Sep5-RB 839..902 447..384 145 89 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:21:37
Subject Length Description Subject Range Query Range Score Percent Strand
Sep2-RB 1688 CG4173-RB 1041..1473 447..15 2150 99.8 Minus
Sep2-RA 1562 CG4173-RA 915..1347 447..15 2150 99.8 Minus
Sep5-RB 1729 CG2916-RB 1051..1376 447..122 565 78.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:21:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20586344..20586776 15..447 2150 99.8 Plus
2R 25286936 2R 7960486..7960811 122..447 565 78.2 Plus
Blast to na_te.dros performed on 2015-02-01 09:21:34 has no hits.

BS04341.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:45:52 Download gff for BS04341.3prime
Subject Subject Range Query Range Percent Splice Strand
Sep2-PA 830..1260 17..447 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:06:27 Download gff for BS04341.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4173-PA 830..1260 17..447 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:35:10 Download gff for BS04341.3prime
Subject Subject Range Query Range Percent Splice Strand
Sep2-RA 915..1347 15..447 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 10:00:47 Download gff for BS04341.3prime
Subject Subject Range Query Range Percent Splice Strand
Sep2-RA 915..1347 15..447 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 10:00:47 Download gff for BS04341.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 20586344..20586776 15..447 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:35:10 Download gff for BS04341.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16412066..16412498 15..447 99   Plus

BS04341.5prime Sequence

397 bp (358 high quality bases) assembled on 2005-12-01

> BS04341.5prime
GAAGTTATCAGTCGACATGTCCGTTGAGGTGGATTTCGTCGACAAGAAGG
AGGTGCACCTCCGCACCCTGAAGCAGTCCGGTCACGTGGGATTCGACAGC
TTGCCTGACCAACTGGTCAACAAGAGTGTCCAGAATGGATTCGTCTTCAA
CGTCATGTGTATAGGCGAAACCGGACTGGGCAAGTCGACGCTGATGGACA
CGCTGTTCAACACCAGCTTCGAGTCCACGCCGAGTCCCCACACTTTGCCG
AGCGTCAAGTTGAAGGCACACACCTACGAGCTGCAGGAGAGCAATGTGCG
ACTCAAGCTCACCATCTGCGACACGGTTGGCTACGGCGATCAGATCAACA
AGGACGACTCGTTCAAGGCGGTGGTGGACTACATCGACGCACAGTTC

BS04341.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:46:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG4173-PA 1260 Sep2-RA 1..381 17..397 1905 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:31:42
Subject Length Description Subject Range Query Range Score Percent Strand
Sep2-RA 1562 CG4173-RA 86..466 17..397 1905 100 Plus
Sep2-RB 1688 CG4173-RB 358..592 163..397 1175 100 Plus
Sep2-RB 1688 CG4173-RB 86..234 17..165 745 100 Plus
Sep5-RB 1729 CG2916-RB 284..548 79..343 440 77.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:31:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20587225..20587459 397..163 1175 100 Minus
3R 32079331 3R 20588123..20588271 165..17 745 100 Minus
2R 25286936 2R 7961314..7961578 343..79 440 77.7 Minus
Blast to na_te.dros performed on 2015-02-12 01:31:40 has no hits.

BS04341.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:45:53 Download gff for BS04341.5prime
Subject Subject Range Query Range Percent Splice Strand
Sep2-PA 1..381 17..397 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:06:29 Download gff for BS04341.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4173-PA 1..381 17..397 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:01:20 Download gff for BS04341.5prime
Subject Subject Range Query Range Percent Splice Strand
Sep2-RA 86..466 17..397 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:23:59 Download gff for BS04341.5prime
Subject Subject Range Query Range Percent Splice Strand
Sep2-RA 86..466 17..397 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:23:59 Download gff for BS04341.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 20587225..20587457 165..397 100 <- Minus
3R 20588124..20588271 17..164 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:01:20 Download gff for BS04341.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16412947..16413179 165..397 100 <- Minus
arm_3R 16413846..16413993 17..164 100   Minus

BS04341.complete Sequence

1292 bp assembled on 2010-05-10

GenBank Submission: KX793934

> BS04341.complete
GAAGTTATCAGTCGACATGTCCGTTGAGGTGGATTTCGTCGACAAGAAGG
AGGTGCACCTCCGCACCCTGAAGCAGTCCGGTCACGTGGGATTCGACAGC
TTGCCTGACCAACTGGTCAACAAGAGTGTCCAGAATGGATTCGTCTTCAA
CGTCATGTGTATAGGCGAAACCGGACTGGGCAAGTCGACGCTGATGGACA
CGCTGTTCAACACCAGCTTCGAGTCCACGCCGAGTCCCCACACTTTGCCG
AGCGTCAAGTTGAAGGCACACACCTACGAGCTGCAGGAGAGCAATGTGCG
ACTCAAGCTCACCATCTGCGACACGGTTGGCTACGGCGATCAGATCAACA
AGGACGACTCGTTCAAGGCGGTGGTGGACTACATCGACGCACAGTTCGAG
AACTATCTGCAGGAGGAGCTGAAGATCAAGCGATCGCTGGTGACATGCCA
CGACAGCCGCATCCACATCTGCCTCTACTTTATTTGCCCCACTGGGCACG
GCCTCAAATCGCTGGACCTGGTGTGCATGAAGAAGCTGGACAGCAAGGTG
AACATAATTCCGGTGATTGCCAAGGCGGATACCATTTCCAAGGTTGAGCT
ACAGCGCTTCAAGGCGAAGATCATTCAGGAGCTAAACGCCAATGGAGTGC
ACATCTACCAGTTCCCCACCGACGATGAGACGGTGGCCGAGACCAACACC
AGCATGAACTCGCACATTCCCTTCGCCGTGGTGGGCAGCACGGAGTTTAT
TAAGGTGGGCAACAAGCTCATCCGCGCTCGCCAGTACCCCTGGGGCACGG
TGCAGGTGGAGAACGAGACGCACTGCGACTTTGTGAAGCTGCGCGAGATG
CTCATTCGCACCAACATGGAGGATATGCGCGAAAAGACACACACGCGCCA
CTACGAGCTGTATCGCCAGAAGAGGCTGGAGCAAATGGGCTTCAGCGATG
TGGACAGCGACAACAAGCCCATCTCGTTCCAGCAGACGTTCGAGGCAAAG
CGCTCCAACCATTTGGCCGAGCTGCAGTCCAAGGAGGAGGAGGTTCGTCA
GATGTTCGTGCAGCGCGTTAAGGAGAAGGAGGCCGAGCTGAAGGAGAGCG
AGAAGGACCTGCACGCCAAGTTCGAGAAGCTAAAGCGGGATCACGCCGAG
GAGAAGCGCAAGCTGGAAGAGTCGCGCAAGGCGCTCGAGGAGGACTACCT
TGACTTCCAGCGGCGCAAGCAGCAGTTGGCCACCGCCCACCACACGCTCA
CCCTCGGCAAGAGCAAGAAGAAGTAGAAGCTTTCTAGACCAT

BS04341.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:41:34
Subject Length Description Subject Range Query Range Score Percent Strand
Sep2-RA 1260 CG4173-PA 1..1260 17..1276 6300 100 Plus
Sep2-RB 1083 CG4173-PB 1..1083 194..1276 5415 100 Plus
Sep5-RB 1269 CG2916-PB 72..1164 79..1171 1295 74.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:41:36
Subject Length Description Subject Range Query Range Score Percent Strand
Sep2-RA 1562 CG4173-RA 86..1347 17..1278 6310 100 Plus
Sep2-RB 1688 CG4173-RB 358..1473 163..1278 5580 100 Plus
Sep5-RB 1729 CG2916-RB 284..1376 79..1171 1295 74.6 Plus
Sep2-RB 1688 CG4173-RB 86..234 17..165 745 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:41:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20586344..20587459 1278..163 5580 100 Minus
2R 25286936 2R 7960486..7961578 1171..79 1295 74.6 Minus
3R 32079331 3R 20588123..20588271 165..17 745 100 Minus
Blast to na_te.dros performed on 2014-11-28 02:41:32 has no hits.

BS04341.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-10 11:54:56 Download gff for BS04341.complete
Subject Subject Range Query Range Percent Splice Strand
Sep2-RA 93..1352 17..1276 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:25:10 Download gff for BS04341.complete
Subject Subject Range Query Range Percent Splice Strand
Sep2-RA 86..1345 17..1276 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:34:11 Download gff for BS04341.complete
Subject Subject Range Query Range Percent Splice Strand
Sep2-RA 86..1345 17..1276 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:34:11 Download gff for BS04341.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20586346..20587457 165..1276 100 <- Minus
3R 20588124..20588271 17..164 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:25:10 Download gff for BS04341.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16412068..16413179 165..1276 100 <- Minus
arm_3R 16413846..16413993 17..164 100   Minus

BS04341.pep Sequence

Translation from 16 to 1275

> BS04341.pep
MSVEVDFVDKKEVHLRTLKQSGHVGFDSLPDQLVNKSVQNGFVFNVMCIG
ETGLGKSTLMDTLFNTSFESTPSPHTLPSVKLKAHTYELQESNVRLKLTI
CDTVGYGDQINKDDSFKAVVDYIDAQFENYLQEELKIKRSLVTCHDSRIH
ICLYFICPTGHGLKSLDLVCMKKLDSKVNIIPVIAKADTISKVELQRFKA
KIIQELNANGVHIYQFPTDDETVAETNTSMNSHIPFAVVGSTEFIKVGNK
LIRARQYPWGTVQVENETHCDFVKLREMLIRTNMEDMREKTHTRHYELYR
QKRLEQMGFSDVDSDNKPISFQQTFEAKRSNHLAELQSKEEEVRQMFVQR
VKEKEAELKESEKDLHAKFEKLKRDHAEEKRKLEESRKALEEDYLDFQRR
KQQLATAHHTLTLGKSKKK*

BS04341.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:12:03
Subject Length Description Subject Range Query Range Score Percent Strand
Sep2-PA 419 CG4173-PA 1..419 1..419 2165 100 Plus
Sep2-PB 360 CG4173-PB 1..360 60..419 1862 100 Plus
Sep5-PB 422 CG2916-PB 19..422 16..419 1651 74.5 Plus
Sep5-PA 422 CG2916-PA 19..422 16..419 1651 74.5 Plus
pnut-PA 539 CG8705-PA 112..516 13..419 782 38.5 Plus