Clone Sequence Records
BS04341.3prime Sequence
447 bp (422 high quality bases) assembled on 2005-12-01
> BS04341.3prime
ATGGTCTAGAAAGCTTCTACTTCTTCTTGCTCTTGCCGAGGGTGAGCGTG
TGGTGGGCGGTGGCCAACTGCTGCTTGCGCCGCTGGAAGTCAAGGTAGTC
CTCCTCGAGCGCCTTGCGCGACTCTTCCAGCTTGCGCTTCTCCTCGGCGT
GATCCCGCTTTAGCTTCTCGAACTTGGCGTGCAGGTCCTTCTCGCTCTCC
TTCAGCTCGGCCTCCTTCTCCTTAACGCGCTGCACGAACATCTGACGAAC
CTCCTCCTCCTTGGACTGCAGCTCGGCCAAATGGTTGGAGCGCTTTGCCT
CGAACGTCTGCTGGAACGAGATGGGCTTGTTGTCGCTGTCCACATCGCTG
AAGCCCATTTGCTCCAGCCTCTTCTGGCGATACAGCTCGTAGTGGCGCGT
GTGTGTCTTTTCGCGCATATCCTCCATGTTGGTGCGAATGAACATCT
BS04341.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:46:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4173-PA | 1260 | Sep2-RA | 830..1260 | 447..17 | 2130 | 99.7 | Minus |
CG2916-PA | 1269 | Sep5-RA | 839..902 | 447..384 | 145 | 89 | Minus |
CG2916-PB | 1269 | Sep5-RB | 839..902 | 447..384 | 145 | 89 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:21:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sep2-RB | 1688 | CG4173-RB | 1041..1473 | 447..15 | 2150 | 99.8 | Minus |
Sep2-RA | 1562 | CG4173-RA | 915..1347 | 447..15 | 2150 | 99.8 | Minus |
Sep5-RB | 1729 | CG2916-RB | 1051..1376 | 447..122 | 565 | 78.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:21:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20586344..20586776 | 15..447 | 2150 | 99.8 | Plus |
2R | 25286936 | 2R | 7960486..7960811 | 122..447 | 565 | 78.2 | Plus |
Blast to na_te.dros performed on 2015-02-01 09:21:34 has no hits.
BS04341.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:45:52 Download gff for
BS04341.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sep2-PA | 830..1260 | 17..447 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:06:27 Download gff for
BS04341.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4173-PA | 830..1260 | 17..447 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:35:10 Download gff for
BS04341.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sep2-RA | 915..1347 | 15..447 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 10:00:47 Download gff for
BS04341.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sep2-RA | 915..1347 | 15..447 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 10:00:47 Download gff for
BS04341.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20586344..20586776 | 15..447 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:35:10 Download gff for
BS04341.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16412066..16412498 | 15..447 | 99 | | Plus |
BS04341.5prime Sequence
397 bp (358 high quality bases) assembled on 2005-12-01
> BS04341.5prime
GAAGTTATCAGTCGACATGTCCGTTGAGGTGGATTTCGTCGACAAGAAGG
AGGTGCACCTCCGCACCCTGAAGCAGTCCGGTCACGTGGGATTCGACAGC
TTGCCTGACCAACTGGTCAACAAGAGTGTCCAGAATGGATTCGTCTTCAA
CGTCATGTGTATAGGCGAAACCGGACTGGGCAAGTCGACGCTGATGGACA
CGCTGTTCAACACCAGCTTCGAGTCCACGCCGAGTCCCCACACTTTGCCG
AGCGTCAAGTTGAAGGCACACACCTACGAGCTGCAGGAGAGCAATGTGCG
ACTCAAGCTCACCATCTGCGACACGGTTGGCTACGGCGATCAGATCAACA
AGGACGACTCGTTCAAGGCGGTGGTGGACTACATCGACGCACAGTTC
BS04341.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:46:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4173-PA | 1260 | Sep2-RA | 1..381 | 17..397 | 1905 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:31:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sep2-RA | 1562 | CG4173-RA | 86..466 | 17..397 | 1905 | 100 | Plus |
Sep2-RB | 1688 | CG4173-RB | 358..592 | 163..397 | 1175 | 100 | Plus |
Sep2-RB | 1688 | CG4173-RB | 86..234 | 17..165 | 745 | 100 | Plus |
Sep5-RB | 1729 | CG2916-RB | 284..548 | 79..343 | 440 | 77.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:31:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20587225..20587459 | 397..163 | 1175 | 100 | Minus |
3R | 32079331 | 3R | 20588123..20588271 | 165..17 | 745 | 100 | Minus |
2R | 25286936 | 2R | 7961314..7961578 | 343..79 | 440 | 77.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:31:40 has no hits.
BS04341.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:45:53 Download gff for
BS04341.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sep2-PA | 1..381 | 17..397 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:06:29 Download gff for
BS04341.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4173-PA | 1..381 | 17..397 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:01:20 Download gff for
BS04341.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sep2-RA | 86..466 | 17..397 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:23:59 Download gff for
BS04341.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sep2-RA | 86..466 | 17..397 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:23:59 Download gff for
BS04341.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20587225..20587457 | 165..397 | 100 | <- | Minus |
3R | 20588124..20588271 | 17..164 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:01:20 Download gff for
BS04341.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16412947..16413179 | 165..397 | 100 | <- | Minus |
arm_3R | 16413846..16413993 | 17..164 | 100 | | Minus |
BS04341.complete Sequence
1292 bp assembled on 2010-05-10
GenBank Submission: KX793934
> BS04341.complete
GAAGTTATCAGTCGACATGTCCGTTGAGGTGGATTTCGTCGACAAGAAGG
AGGTGCACCTCCGCACCCTGAAGCAGTCCGGTCACGTGGGATTCGACAGC
TTGCCTGACCAACTGGTCAACAAGAGTGTCCAGAATGGATTCGTCTTCAA
CGTCATGTGTATAGGCGAAACCGGACTGGGCAAGTCGACGCTGATGGACA
CGCTGTTCAACACCAGCTTCGAGTCCACGCCGAGTCCCCACACTTTGCCG
AGCGTCAAGTTGAAGGCACACACCTACGAGCTGCAGGAGAGCAATGTGCG
ACTCAAGCTCACCATCTGCGACACGGTTGGCTACGGCGATCAGATCAACA
AGGACGACTCGTTCAAGGCGGTGGTGGACTACATCGACGCACAGTTCGAG
AACTATCTGCAGGAGGAGCTGAAGATCAAGCGATCGCTGGTGACATGCCA
CGACAGCCGCATCCACATCTGCCTCTACTTTATTTGCCCCACTGGGCACG
GCCTCAAATCGCTGGACCTGGTGTGCATGAAGAAGCTGGACAGCAAGGTG
AACATAATTCCGGTGATTGCCAAGGCGGATACCATTTCCAAGGTTGAGCT
ACAGCGCTTCAAGGCGAAGATCATTCAGGAGCTAAACGCCAATGGAGTGC
ACATCTACCAGTTCCCCACCGACGATGAGACGGTGGCCGAGACCAACACC
AGCATGAACTCGCACATTCCCTTCGCCGTGGTGGGCAGCACGGAGTTTAT
TAAGGTGGGCAACAAGCTCATCCGCGCTCGCCAGTACCCCTGGGGCACGG
TGCAGGTGGAGAACGAGACGCACTGCGACTTTGTGAAGCTGCGCGAGATG
CTCATTCGCACCAACATGGAGGATATGCGCGAAAAGACACACACGCGCCA
CTACGAGCTGTATCGCCAGAAGAGGCTGGAGCAAATGGGCTTCAGCGATG
TGGACAGCGACAACAAGCCCATCTCGTTCCAGCAGACGTTCGAGGCAAAG
CGCTCCAACCATTTGGCCGAGCTGCAGTCCAAGGAGGAGGAGGTTCGTCA
GATGTTCGTGCAGCGCGTTAAGGAGAAGGAGGCCGAGCTGAAGGAGAGCG
AGAAGGACCTGCACGCCAAGTTCGAGAAGCTAAAGCGGGATCACGCCGAG
GAGAAGCGCAAGCTGGAAGAGTCGCGCAAGGCGCTCGAGGAGGACTACCT
TGACTTCCAGCGGCGCAAGCAGCAGTTGGCCACCGCCCACCACACGCTCA
CCCTCGGCAAGAGCAAGAAGAAGTAGAAGCTTTCTAGACCAT
BS04341.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:41:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sep2-RA | 1260 | CG4173-PA | 1..1260 | 17..1276 | 6300 | 100 | Plus |
Sep2-RB | 1083 | CG4173-PB | 1..1083 | 194..1276 | 5415 | 100 | Plus |
Sep5-RB | 1269 | CG2916-PB | 72..1164 | 79..1171 | 1295 | 74.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:41:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sep2-RA | 1562 | CG4173-RA | 86..1347 | 17..1278 | 6310 | 100 | Plus |
Sep2-RB | 1688 | CG4173-RB | 358..1473 | 163..1278 | 5580 | 100 | Plus |
Sep5-RB | 1729 | CG2916-RB | 284..1376 | 79..1171 | 1295 | 74.6 | Plus |
Sep2-RB | 1688 | CG4173-RB | 86..234 | 17..165 | 745 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:41:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20586344..20587459 | 1278..163 | 5580 | 100 | Minus |
2R | 25286936 | 2R | 7960486..7961578 | 1171..79 | 1295 | 74.6 | Minus |
3R | 32079331 | 3R | 20588123..20588271 | 165..17 | 745 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:41:32 has no hits.
BS04341.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-10 11:54:56 Download gff for
BS04341.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sep2-RA | 93..1352 | 17..1276 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:25:10 Download gff for
BS04341.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sep2-RA | 86..1345 | 17..1276 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:34:11 Download gff for
BS04341.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sep2-RA | 86..1345 | 17..1276 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:34:11 Download gff for
BS04341.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20586346..20587457 | 165..1276 | 100 | <- | Minus |
3R | 20588124..20588271 | 17..164 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:25:10 Download gff for
BS04341.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16412068..16413179 | 165..1276 | 100 | <- | Minus |
arm_3R | 16413846..16413993 | 17..164 | 100 | | Minus |
BS04341.pep Sequence
Translation from 16 to 1275
> BS04341.pep
MSVEVDFVDKKEVHLRTLKQSGHVGFDSLPDQLVNKSVQNGFVFNVMCIG
ETGLGKSTLMDTLFNTSFESTPSPHTLPSVKLKAHTYELQESNVRLKLTI
CDTVGYGDQINKDDSFKAVVDYIDAQFENYLQEELKIKRSLVTCHDSRIH
ICLYFICPTGHGLKSLDLVCMKKLDSKVNIIPVIAKADTISKVELQRFKA
KIIQELNANGVHIYQFPTDDETVAETNTSMNSHIPFAVVGSTEFIKVGNK
LIRARQYPWGTVQVENETHCDFVKLREMLIRTNMEDMREKTHTRHYELYR
QKRLEQMGFSDVDSDNKPISFQQTFEAKRSNHLAELQSKEEEVRQMFVQR
VKEKEAELKESEKDLHAKFEKLKRDHAEEKRKLEESRKALEEDYLDFQRR
KQQLATAHHTLTLGKSKKK*
BS04341.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:12:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sep2-PA | 419 | CG4173-PA | 1..419 | 1..419 | 2165 | 100 | Plus |
Sep2-PB | 360 | CG4173-PB | 1..360 | 60..419 | 1862 | 100 | Plus |
Sep5-PB | 422 | CG2916-PB | 19..422 | 16..419 | 1651 | 74.5 | Plus |
Sep5-PA | 422 | CG2916-PA | 19..422 | 16..419 | 1651 | 74.5 | Plus |
pnut-PA | 539 | CG8705-PA | 112..516 | 13..419 | 782 | 38.5 | Plus |