Clone Sequence Records
BS04348.3prime Sequence
859 bp (809 high quality bases) assembled on 2005-12-01
> BS04348.3prime
ATGGTCTAGAAAGCTTTTACAAGGAGCATGTGTCTTCATTAACCACCTCA
GCGTTGCAATTCTCTTCCTCCTGATGAGGCTCTTCGCACTCCTCGCCCTC
CGCTTCAGGAGTGACCTCTACATCATTGCTCTTCTCGCCCGGCTCCTCTT
CAATGAACTCCACATCATCGTGTTGCTCTTCAGCTGCCTCTTCCACCTCA
TCATGATCTTCAGTCATCTCATTCTCATTTTCATCATCATCATCTCCCTT
CACTTCGTCCACAACGGTCAGATCAAGATGAGAAATGAACTCTTCGCCGT
CCTCTTCGGTTAGGTCAATTTCAGATAACTCGGCGGTGGACCTAGCCTCT
GAGCTGCGAACCGCCTTGAGGGCCTCCTTGCCACTTATCTCGCGGCAATT
GAGCTGGTTAAAACGGTAGCTAAGGCAAAAGCCCTTCTTCTGCACCAGGT
TGTAAGACTTACTGCCACAGCTTATTACTACCACCTTGCCATCCTTGGTC
TGGCTTATACGGCCAAATTCCCAAGTCTTCGACAGAAGGTCGCTATTCTG
GTCTTTTAAAAGTTGAAACGTGACCTTATCGGGCTCATCAGCTGAACGTG
GTACTCTGACTGTGATTCCCTTTGTGGCCGGAATATCATCCTCCGGACAA
CAAATTAGTTTAGTTTCCGGTAACGCCGTGATCTTGGAAATCGCATGCTC
CAGCCATTGGCGGGAGTTCTTGTCCATGCAGACAACTTGGATCATTCCAG
TAAGAAATTGAATGCCCCCAAAATTGATGCTGGACTTCCAACCCTTTTTC
AACTCCTCCACAAGGCCGGCTTCGATCTCATGCAATTGCTGATTAGTCAG
CTCGCAATC
BS04348.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:46:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9641-PA | 1608 | CG9641-RA | 766..1608 | 859..17 | 4215 | 100 | Minus |
| CG9641-PB | 1332 | CG9641-RB | 490..1332 | 859..17 | 4215 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:01:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9641-RB | 1669 | CG9641-RB | 579..1421 | 859..17 | 4215 | 100 | Minus |
| CG9641-RA | 1933 | CG9641-RA | 843..1685 | 859..17 | 4215 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:01:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2975178..2976020 | 17..859 | 4215 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:01:09 has no hits.
BS04348.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:46:02 Download gff for
BS04348.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9641-PB | 490..1332 | 17..859 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:06:41 Download gff for
BS04348.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9641-PB | 490..1332 | 17..859 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:58:48 Download gff for
BS04348.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9641-RA | 843..1687 | 13..859 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:51:17 Download gff for
BS04348.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9641-RA | 843..1687 | 13..859 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:51:17 Download gff for
BS04348.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2975172..2976020 | 13..859 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:58:48 Download gff for
BS04348.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2975172..2976020 | 13..859 | 99 | | Plus |
BS04348.5prime Sequence
826 bp (737 high quality bases) assembled on 2005-12-01
> BS04348.5prime
GAAGTTATCAGTCGACATGGAGGCCACCTACCGCCAGGAACGGGAATGGC
TCAATGCCCGCGCTCCCATGAATGGCAATAGTTCCGCCAACTATGGCCCT
TATCGCGGCTATGACGGCTTTTTCGGCCAATTGGGCCAATCACAGATCCC
AAATCAGACCCAAATGGGTCAAACTTTGAACGGCTCTGCCTCCTGGTCGT
TCCCCTCCATGTCCTCTGACTACCACCAATCCCCTGCTGCCCCGCAGGCC
AACTCTAACTGGAGCCGCGAAAGAGTCAACTGGAACAACGAAATGCGTCG
CGACCCCTCGTATCAAGCTGAGCCAGGCAACACCATCAATCGCTCGTGGC
CCGGCAACGGCGGCCCTTCCGACGGGAGCCATTGGCCCACTCCGAACTCA
TCCATGCAGGTGACATCGGGTGAAAGGGGACTGCCGGAACACATTCGCAA
GGAGCTATCGCTCCTTGGCCCCGCCAAGCGCAAGTGGTTCTTTCGCTATC
TGGACACGGGCATCAGCAATGAAAAGGCCCTTATGAAGGCCTCGGAAAGA
CGCACCAGTCCGGTACGTTCTGAGTGGTACGACAAGTCAGTTTCGGCTGA
CCGCGGACGCAGGCGTCCGGAGCAGCCGATTTCGGATGATCGCGTTCGCA
AGCGTGCGAATGATGATAACTCGTCGGGCGGTAGAGCCCATGAGGATGTA
AAGAAGCAGAGGGTCCCAGAGCCGTCATGGACCTCGAAACAGAATAGTAT
TACCATGGCAATAATGGCGGAAACTTATCCGGATTGCGAGCTGACTAATC
AGCAATTGCATGAGATCGAAGCCGGC
BS04348.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:46:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9641-PA | 1608 | CG9641-RA | 1..810 | 17..826 | 4050 | 100 | Plus |
| CG9641-PB | 1332 | CG9641-RB | 1..534 | 293..826 | 2670 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:37:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9641-RA | 1933 | CG9641-RA | 78..887 | 17..826 | 4050 | 100 | Plus |
| CG9641-RB | 1669 | CG9641-RB | 45..623 | 248..826 | 2895 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:36:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2975976..2976785 | 826..17 | 4050 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 03:37:00 has no hits.
BS04348.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:46:03 Download gff for
BS04348.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9641-PA | 1..810 | 17..826 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:06:42 Download gff for
BS04348.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9641-PA | 1..810 | 17..826 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 05:02:24 Download gff for
BS04348.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9641-RA | 78..887 | 17..826 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:45:28 Download gff for
BS04348.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9641-RA | 78..887 | 17..826 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:45:28 Download gff for
BS04348.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2975976..2976785 | 17..826 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 05:02:24 Download gff for
BS04348.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2975976..2976785 | 17..826 | 100 | | Minus |
BS04348.complete Sequence
1640 bp assembled on 2007-10-17
GenBank Submission: FJ634923
> BS04348.complete
GAAGTTATCAGTCGACATGGAGGCCACCTACCGCCAGGAACGGGAATGGC
TCAATGCCCGCGCTCCCATGAATGGCAATAGTTCCGCCAACTATGGCCCT
TATCGCGGCTATGACGGCTTTTTCGGCCAATTGGGCCAATCACAGATCCC
AAATCAGACCCAAATGGGTCAAACTTTGAACGGCTCTGCCTCCTGGTCGT
TCCCCTCCATGTCCTCTGACTACCACCAATCCCCTGCTGCCCCGCAGGCC
AACTCTAACTGGAGCCGCGAAAGAGTCAACTGGAACAACGAAATGCGTCG
CGACCCCTCGTATCAAGCTGAGCCAGGCAACACCATCAATCGCTCGTGGC
CCGGCAACGGCGGCCCTTCCGACGGGAGCCATTGGCCCACTCCGAACTCA
TCCATGCAGGTGACATCGGGTGAAAGGGGACTGCCGGAACACATTCGCAA
GGAGCTATCGCTCCTTGGCCCCGCCAAGCGCAAGTGGTTCTTTCGCTATC
TGGACACGGGCATCAGCAATGAAAAGGCCCTTATGAAGGCCTCGGAAAGA
CGCACCAGTCCGGTACGTTCTGAGTGGTACGACAAGTCAGTTTCGGCTGA
CCGCGGACGCAGGCGTCCGGAGCAGCCGATTTCGGATGATCGCGTTCGCA
AGCGTGCGAATGATGATAACTCGTCGGGCGGTAGAGCCCATGAGGATGTA
AAGAAGCAGAGGGTCCCAGAGCCGTCATGGACCTCGAAACAGAATAGTAT
TACCATGGCAATAATGGCGGAAACTTATCCGGATTGCGAGCTGACTAATC
AGCAATTGCATGAGATCGAAGCCGGCCTTGTGGAGGAGTTGAAAAAGGGT
TGGAAGTCCAGCATCAATTTTGGGGGCATTCAATTTCTTACTGGAATGAT
CCAAGTTGTCTGCATGGACAAGAACTCCCGCCAATGGCTGGAGCATGCGA
TTTCCAAGATCACGGCGTTACCGGAAACTAAACTAATTTGTTGTCCGGAG
GATGATATTCCGGCCACAAAGGGAATCACAGTCAGAGTACCACGTTCAGC
TGATGAGCCCGATAAGGTCACGTTTCAACTTTTAAAAGACCAGAATAGCG
ACCTTCTGTCGAAGACTTGGGAATTTGGCCGTATAAGCCAGACCAAGGAT
GGCAAGGTGGTAGTAATAAGCTGTGGCAGTAAGTCTTACAACCTGGTGCA
GAAGAAGGGCTTTTGCCTTAGCTACCGTTTTAACCAGCTCAATTGCCGCG
AGATAAGTGGCAAGGAGGCCCTCAAGGCGGTTCGCAGCTCAGAGGCTAGG
TCCACCGCCGAGTTATCTGAAATTGACCTAACCGAAGAGGACGGCGAAGA
GTTCATTTCTCATCTTGATCTGACCGTTGTGGACGAAGTGAAGGGAGATG
ATGATGATGAAAATGAGAATGAGATGACTGAAGATCATGATGAGGTGGAA
GAGGCAGCTGAAGAGCAACACGATGATGTGGAGTTCATTGAAGAGGAGCC
GGGCGAGAAGAGCAATGATGTAGAGGTCACTCCTGAAGCGGAGGGCGAGG
AGTGCGAAGAGCCTCATCAGGAGGAAGAGAATTGCAACGCTGAGGTGGTT
AATGAAGACACATGCTCCTTGTAAAAGCTTTCTAGACCAT
BS04348.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:48:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9641-RA | 1608 | CG9641-PA | 1..1608 | 17..1624 | 8040 | 100 | Plus |
| CG9641-RB | 1332 | CG9641-PB | 1..1332 | 293..1624 | 6660 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:48:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9641-RA | 1933 | CG9641-RA | 78..1685 | 17..1624 | 8040 | 100 | Plus |
| CG9641-RB | 1669 | CG9641-RB | 45..1421 | 248..1624 | 6885 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:48:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2975178..2976785 | 1624..17 | 8040 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:48:50 has no hits.
BS04348.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:04:55 Download gff for
BS04348.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9641-RA | 1..1608 | 17..1624 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:33:54 Download gff for
BS04348.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9641-RA | 75..1684 | 17..1628 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:54:58 Download gff for
BS04348.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9641-RA | 78..1683 | 17..1622 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:48:41 Download gff for
BS04348.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9641-RA | 75..1680 | 17..1622 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:27:07 Download gff for
BS04348.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9641-RA | 78..1683 | 17..1622 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:27:07 Download gff for
BS04348.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2975180..2976785 | 17..1622 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:54:58 Download gff for
BS04348.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2975180..2976785 | 17..1622 | 100 | | Minus |
BS04348.pep Sequence
Translation from 16 to 1623
> BS04348.pep
MEATYRQEREWLNARAPMNGNSSANYGPYRGYDGFFGQLGQSQIPNQTQM
GQTLNGSASWSFPSMSSDYHQSPAAPQANSNWSRERVNWNNEMRRDPSYQ
AEPGNTINRSWPGNGGPSDGSHWPTPNSSMQVTSGERGLPEHIRKELSLL
GPAKRKWFFRYLDTGISNEKALMKASERRTSPVRSEWYDKSVSADRGRRR
PEQPISDDRVRKRANDDNSSGGRAHEDVKKQRVPEPSWTSKQNSITMAIM
AETYPDCELTNQQLHEIEAGLVEELKKGWKSSINFGGIQFLTGMIQVVCM
DKNSRQWLEHAISKITALPETKLICCPEDDIPATKGITVRVPRSADEPDK
VTFQLLKDQNSDLLSKTWEFGRISQTKDGKVVVISCGSKSYNLVQKKGFC
LSYRFNQLNCREISGKEALKAVRSSEARSTAELSEIDLTEEDGEEFISHL
DLTVVDEVKGDDDDENENEMTEDHDEVEEAAEEQHDDVEFIEEEPGEKSN
DVEVTPEAEGEECEEPHQEEENCNAEVVNEDTCSL*
BS04348.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:40:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9641-PA | 535 | CG9641-PA | 1..535 | 1..535 | 2849 | 100 | Plus |
| CG9641-PB | 443 | CG9641-PB | 1..443 | 93..535 | 2341 | 100 | Plus |
