Clone BS04356 Report

Search the DGRC for BS04356

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:43
Well:56
Vector:pDNR-Dual
Associated Gene/TranscriptCG7222-RA
Protein status:BS04356.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04356.3prime Sequence

648 bp (647 high quality bases) assembled on 2005-12-01

> BS04356.3prime
ATGGTCTAGAAAGCTTTCAAAGGGGACTGTTGTCGGAGTCTTCGCGCTCT
TGGATTGTGGTAATGCTTTGCTGCAAGGCATTCGGTGTCAGCCATTCTTT
TGGCAAACATCTTTGTAGAAATGGCACACAGGAGCTGAAATGCGCTAGAC
GATTGACCCAGCTGGGTATTTCTTGGCCGCAAAGTATCTGAGTTAATGAG
CCCGAGAAGTGGTTGCAATTGTTGTTCATGAGATGATATCGGTCGCCACG
GAACTGATTACCCAGCTCCTCGACGATACGTCGCACCTCCTCGTACGTAA
AGTCGGTGCAGCCGATTTGGATGCTCTGCCGGAACTGGAACTGATCGCCC
AACTCGTCGTGATCCCTCGGTGAGATCTCGAATACCCCCGTAAACGGAAA
TGGATGTCCGCCGTATGCGAATTCGGTGCCAAAGGCTTCTACGCCGGAGT
GAAATACGCCCAGGCCGATTGAGGTGGTGTACTCGTTGATCCAGTACATA
TCGTAGACATTGAGTATAACAGGCTCGCGAGTACCCATATTGGATGGCAG
TAGCTCTTCATTACCGATCTCGTCTTTTGGTACACTGAGACAGCTCGGAA
ACGACAGATTGCACGGCAATCCGTTGGAGAACATGTCGACTGATAACT

BS04356.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:46:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG7222-PA 618 CG7222-RA 1..618 634..17 3090 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:22:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG7222-RB 1395 CG7222-RB 107..724 634..17 3090 100 Minus
CG7222-RA 1523 CG7222-RA 235..852 634..17 3090 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:22:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10814282..10814591 497..188 1550 100 Minus
2R 25286936 2R 10814077..10814214 634..497 690 100 Minus
2R 25286936 2R 10814872..10814962 189..99 455 100 Minus
2R 25286936 2R 10815029..10815110 98..17 410 100 Minus
Blast to na_te.dros performed on 2015-02-01 09:22:22 has no hits.

BS04356.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:46:15 Download gff for BS04356.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7222-PA 1..618 17..634 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:07:01 Download gff for BS04356.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7222-PA 1..618 17..634 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:35:18 Download gff for BS04356.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7222-RA 227..858 10..646 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 10:00:56 Download gff for BS04356.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7222-RA 227..858 10..646 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 10:00:56 Download gff for BS04356.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 10814069..10814214 497..646 96 -> Minus
2R 10814283..10814591 188..496 100 -> Minus
2R 10814874..10814962 99..187 100 -> Minus
2R 10815029..10815116 10..98 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:35:18 Download gff for BS04356.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6701574..6701719 497..646 96 -> Minus
arm_2R 6701788..6702096 188..496 100 -> Minus
arm_2R 6702379..6702467 99..187 100 -> Minus
arm_2R 6702534..6702621 10..98 96   Minus

BS04356.5prime Sequence

648 bp (647 high quality bases) assembled on 2005-11-29

> BS04356.5prime
GAAGTTATCAGTCGACATGTTCTCCAACGGATTGCCGTGCAATCTGTCGT
TTCCGAGCTGTCTCAGTGTACCAAAAGACGAGATCGGTAATGAAGAGCTA
CTGCCATCCAATATGGGTACTCGCGAGCCTGTTATACTCAATGTCTACGA
TATGTACTGGATCAACGAGTACACCACCTCAATCGGCCTGGGCGTATTTC
ACTCCGGCGTAGAAGCCTTTGGCACCGAATTCGCATACGGCGGACATCCA
TTTCCGTTTACGGGGGTATTCGAGATCTCACCGAGGGATCACGACGAGTT
GGGCGATCAGTTCCAGTTCCGGCAGAGCATCCAAATCGGCTGCACCGACT
TTACGTACGAGGAGGTGCGACGTATCGTCGAGGAGCTGGGTAATCAGTTC
CGTGGCGACCGATATCATCTCATGAACAACAATTGCAACCACTTCTCGGG
CTCATTAACTCAGATACTTTGCGGCCAAGAAATACCCAGCTGGGTCAATC
GTCTAGCGCATTTCAGCTCCTGTGTGCCATTTCTACAAAGATGTTTGCCA
AAAGAATGGCTGACACCGAATGCCTTGCAGCAAAGCATTACCACAATCCA
AGAGCGCGAAGACTCCGACAACAGTCCCCTTTGAAAGCTTTCTAGACC

BS04356.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:46:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG7222-PA 618 CG7222-RA 1..618 17..634 3090 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:26:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG7222-RB 1395 CG7222-RB 107..724 17..634 3090 100 Plus
CG7222-RA 1523 CG7222-RA 235..852 17..634 3090 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:26:22
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10814282..10814591 154..463 1550 100 Plus
2R 25286936 2R 10814077..10814214 17..154 690 100 Plus
2R 25286936 2R 10814872..10814962 462..552 455 100 Plus
2R 25286936 2R 10815029..10815110 553..634 410 100 Plus
Blast to na_te.dros performed on 2015-02-04 04:26:24 has no hits.

BS04356.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:46:16 Download gff for BS04356.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7222-PA 1..618 17..634 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:07:03 Download gff for BS04356.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7222-PA 1..618 17..634 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 05:11:25 Download gff for BS04356.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7222-RA 227..858 5..641 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:51:59 Download gff for BS04356.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7222-RA 227..858 5..641 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:51:59 Download gff for BS04356.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 10814069..10814214 5..154 96 -> Plus
2R 10814283..10814591 155..463 100 -> Plus
2R 10814874..10814962 464..552 100 -> Plus
2R 10815029..10815116 553..641 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 05:11:25 Download gff for BS04356.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6701574..6701719 5..154 96 -> Plus
arm_2R 6701788..6702096 155..463 100 -> Plus
arm_2R 6702379..6702467 464..552 100 -> Plus
arm_2R 6702534..6702621 553..641 96   Plus

BS04356.complete Sequence

650 bp (650 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634924

> BS04356.complete
GAAGTTATCAGTCGACATGTTCTCCAACGGATTGCCGTGCAATCTGTCGT
TTCCGAGCTGTCTCAGTGTACCAAAAGACGAGATCGGTAATGAAGAGCTA
CTGCCATCCAATATGGGTACTCGCGAGCCTGTTATACTCAATGTCTACGA
TATGTACTGGATCAACGAGTACACCACCTCAATCGGCCTGGGCGTATTTC
ACTCCGGCGTAGAAGCCTTTGGCACCGAATTCGCATACGGCGGACATCCA
TTTCCGTTTACGGGGGTATTCGAGATCTCACCGAGGGATCACGACGAGTT
GGGCGATCAGTTCCAGTTCCGGCAGAGCATCCAAATCGGCTGCACCGACT
TTACGTACGAGGAGGTGCGACGTATCGTCGAGGAGCTGGGTAATCAGTTC
CGTGGCGACCGATATCATCTCATGAACAACAATTGCAACCACTTCTCGGG
CTCATTAACTCAGATACTTTGCGGCCAAGAAATACCCAGCTGGGTCAATC
GTCTAGCGCATTTCAGCTCCTGTGTGCCATTTCTACAAAGATGTTTGCCA
AAAGAATGGCTGACACCGAATGCCTTGCAGCAAAGCATTACCACAATCCA
AGAGCGCGAAGACTCCGACAACAGTCCCCTTTGAAAGCTTTCTAGACCAT

BS04356.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:50:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG7222-RB 618 CG7222-PB 1..618 17..634 3090 100 Plus
CG7222-RA 618 CG7222-PA 1..618 17..634 3090 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:50:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG7222-RB 1395 CG7222-RB 107..724 17..634 3090 100 Plus
CG7222-RA 1523 CG7222-RA 235..852 17..634 3090 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:50:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10814282..10814591 154..463 1550 100 Plus
2R 25286936 2R 10814077..10814214 17..154 690 100 Plus
2R 25286936 2R 10814872..10814962 462..552 455 100 Plus
2R 25286936 2R 10815029..10815110 553..634 410 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:50:03 has no hits.

BS04356.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:53:42 Download gff for BS04356.complete
Subject Subject Range Query Range Percent Splice Strand
CG7222-RA 1..618 17..634 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:29:27 Download gff for BS04356.complete
Subject Subject Range Query Range Percent Splice Strand
CG7222-RA 225..856 5..641 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:42:07 Download gff for BS04356.complete
Subject Subject Range Query Range Percent Splice Strand
CG7222-RA 240..851 22..633 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:53:42 Download gff for BS04356.complete
Subject Subject Range Query Range Percent Splice Strand
CG7222-RA 225..856 5..641 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:31:58 Download gff for BS04356.complete
Subject Subject Range Query Range Percent Splice Strand
CG7222-RA 240..851 22..633 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:31:58 Download gff for BS04356.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10814082..10814214 22..154 100 -> Plus
2R 10814283..10814591 155..463 100 -> Plus
2R 10814874..10814962 464..552 100 -> Plus
2R 10815029..10815109 553..633 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:42:07 Download gff for BS04356.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6701587..6701719 22..154 100 -> Plus
arm_2R 6701788..6702096 155..463 100 -> Plus
arm_2R 6702379..6702467 464..552 100 -> Plus
arm_2R 6702534..6702614 553..633 100   Plus

BS04356.pep Sequence

Translation from 16 to 633

> BS04356.pep
MFSNGLPCNLSFPSCLSVPKDEIGNEELLPSNMGTREPVILNVYDMYWIN
EYTTSIGLGVFHSGVEAFGTEFAYGGHPFPFTGVFEISPRDHDELGDQFQ
FRQSIQIGCTDFTYEEVRRIVEELGNQFRGDRYHLMNNNCNHFSGSLTQI
LCGQEIPSWVNRLAHFSSCVPFLQRCLPKEWLTPNALQQSITTIQEREDS
DNSPL*

BS04356.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:49:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG7222-PB 205 CG7222-PB 1..205 1..205 1120 100 Plus
CG7222-PA 205 CG7222-PA 1..205 1..205 1120 100 Plus
CG12231-PA 183 CG12231-PA 14..166 24..175 426 50.3 Plus