Clone Sequence Records
BS04356.3prime Sequence
648 bp (647 high quality bases) assembled on 2005-12-01
> BS04356.3prime
ATGGTCTAGAAAGCTTTCAAAGGGGACTGTTGTCGGAGTCTTCGCGCTCT
TGGATTGTGGTAATGCTTTGCTGCAAGGCATTCGGTGTCAGCCATTCTTT
TGGCAAACATCTTTGTAGAAATGGCACACAGGAGCTGAAATGCGCTAGAC
GATTGACCCAGCTGGGTATTTCTTGGCCGCAAAGTATCTGAGTTAATGAG
CCCGAGAAGTGGTTGCAATTGTTGTTCATGAGATGATATCGGTCGCCACG
GAACTGATTACCCAGCTCCTCGACGATACGTCGCACCTCCTCGTACGTAA
AGTCGGTGCAGCCGATTTGGATGCTCTGCCGGAACTGGAACTGATCGCCC
AACTCGTCGTGATCCCTCGGTGAGATCTCGAATACCCCCGTAAACGGAAA
TGGATGTCCGCCGTATGCGAATTCGGTGCCAAAGGCTTCTACGCCGGAGT
GAAATACGCCCAGGCCGATTGAGGTGGTGTACTCGTTGATCCAGTACATA
TCGTAGACATTGAGTATAACAGGCTCGCGAGTACCCATATTGGATGGCAG
TAGCTCTTCATTACCGATCTCGTCTTTTGGTACACTGAGACAGCTCGGAA
ACGACAGATTGCACGGCAATCCGTTGGAGAACATGTCGACTGATAACT
BS04356.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:46:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7222-PA | 618 | CG7222-RA | 1..618 | 634..17 | 3090 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:22:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7222-RB | 1395 | CG7222-RB | 107..724 | 634..17 | 3090 | 100 | Minus |
CG7222-RA | 1523 | CG7222-RA | 235..852 | 634..17 | 3090 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:22:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10814282..10814591 | 497..188 | 1550 | 100 | Minus |
2R | 25286936 | 2R | 10814077..10814214 | 634..497 | 690 | 100 | Minus |
2R | 25286936 | 2R | 10814872..10814962 | 189..99 | 455 | 100 | Minus |
2R | 25286936 | 2R | 10815029..10815110 | 98..17 | 410 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-01 09:22:22 has no hits.
BS04356.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:46:15 Download gff for
BS04356.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7222-PA | 1..618 | 17..634 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:07:01 Download gff for
BS04356.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7222-PA | 1..618 | 17..634 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:35:18 Download gff for
BS04356.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7222-RA | 227..858 | 10..646 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 10:00:56 Download gff for
BS04356.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7222-RA | 227..858 | 10..646 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 10:00:56 Download gff for
BS04356.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10814069..10814214 | 497..646 | 96 | -> | Minus |
2R | 10814283..10814591 | 188..496 | 100 | -> | Minus |
2R | 10814874..10814962 | 99..187 | 100 | -> | Minus |
2R | 10815029..10815116 | 10..98 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:35:18 Download gff for
BS04356.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6701574..6701719 | 497..646 | 96 | -> | Minus |
arm_2R | 6701788..6702096 | 188..496 | 100 | -> | Minus |
arm_2R | 6702379..6702467 | 99..187 | 100 | -> | Minus |
arm_2R | 6702534..6702621 | 10..98 | 96 | | Minus |
BS04356.5prime Sequence
648 bp (647 high quality bases) assembled on 2005-11-29
> BS04356.5prime
GAAGTTATCAGTCGACATGTTCTCCAACGGATTGCCGTGCAATCTGTCGT
TTCCGAGCTGTCTCAGTGTACCAAAAGACGAGATCGGTAATGAAGAGCTA
CTGCCATCCAATATGGGTACTCGCGAGCCTGTTATACTCAATGTCTACGA
TATGTACTGGATCAACGAGTACACCACCTCAATCGGCCTGGGCGTATTTC
ACTCCGGCGTAGAAGCCTTTGGCACCGAATTCGCATACGGCGGACATCCA
TTTCCGTTTACGGGGGTATTCGAGATCTCACCGAGGGATCACGACGAGTT
GGGCGATCAGTTCCAGTTCCGGCAGAGCATCCAAATCGGCTGCACCGACT
TTACGTACGAGGAGGTGCGACGTATCGTCGAGGAGCTGGGTAATCAGTTC
CGTGGCGACCGATATCATCTCATGAACAACAATTGCAACCACTTCTCGGG
CTCATTAACTCAGATACTTTGCGGCCAAGAAATACCCAGCTGGGTCAATC
GTCTAGCGCATTTCAGCTCCTGTGTGCCATTTCTACAAAGATGTTTGCCA
AAAGAATGGCTGACACCGAATGCCTTGCAGCAAAGCATTACCACAATCCA
AGAGCGCGAAGACTCCGACAACAGTCCCCTTTGAAAGCTTTCTAGACC
BS04356.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:46:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7222-PA | 618 | CG7222-RA | 1..618 | 17..634 | 3090 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:26:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7222-RB | 1395 | CG7222-RB | 107..724 | 17..634 | 3090 | 100 | Plus |
CG7222-RA | 1523 | CG7222-RA | 235..852 | 17..634 | 3090 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:26:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10814282..10814591 | 154..463 | 1550 | 100 | Plus |
2R | 25286936 | 2R | 10814077..10814214 | 17..154 | 690 | 100 | Plus |
2R | 25286936 | 2R | 10814872..10814962 | 462..552 | 455 | 100 | Plus |
2R | 25286936 | 2R | 10815029..10815110 | 553..634 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 04:26:24 has no hits.
BS04356.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:46:16 Download gff for
BS04356.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7222-PA | 1..618 | 17..634 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:07:03 Download gff for
BS04356.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7222-PA | 1..618 | 17..634 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 05:11:25 Download gff for
BS04356.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7222-RA | 227..858 | 5..641 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:51:59 Download gff for
BS04356.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7222-RA | 227..858 | 5..641 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:51:59 Download gff for
BS04356.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10814069..10814214 | 5..154 | 96 | -> | Plus |
2R | 10814283..10814591 | 155..463 | 100 | -> | Plus |
2R | 10814874..10814962 | 464..552 | 100 | -> | Plus |
2R | 10815029..10815116 | 553..641 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 05:11:25 Download gff for
BS04356.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6701574..6701719 | 5..154 | 96 | -> | Plus |
arm_2R | 6701788..6702096 | 155..463 | 100 | -> | Plus |
arm_2R | 6702379..6702467 | 464..552 | 100 | -> | Plus |
arm_2R | 6702534..6702621 | 553..641 | 96 | | Plus |
BS04356.complete Sequence
650 bp (650 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634924
> BS04356.complete
GAAGTTATCAGTCGACATGTTCTCCAACGGATTGCCGTGCAATCTGTCGT
TTCCGAGCTGTCTCAGTGTACCAAAAGACGAGATCGGTAATGAAGAGCTA
CTGCCATCCAATATGGGTACTCGCGAGCCTGTTATACTCAATGTCTACGA
TATGTACTGGATCAACGAGTACACCACCTCAATCGGCCTGGGCGTATTTC
ACTCCGGCGTAGAAGCCTTTGGCACCGAATTCGCATACGGCGGACATCCA
TTTCCGTTTACGGGGGTATTCGAGATCTCACCGAGGGATCACGACGAGTT
GGGCGATCAGTTCCAGTTCCGGCAGAGCATCCAAATCGGCTGCACCGACT
TTACGTACGAGGAGGTGCGACGTATCGTCGAGGAGCTGGGTAATCAGTTC
CGTGGCGACCGATATCATCTCATGAACAACAATTGCAACCACTTCTCGGG
CTCATTAACTCAGATACTTTGCGGCCAAGAAATACCCAGCTGGGTCAATC
GTCTAGCGCATTTCAGCTCCTGTGTGCCATTTCTACAAAGATGTTTGCCA
AAAGAATGGCTGACACCGAATGCCTTGCAGCAAAGCATTACCACAATCCA
AGAGCGCGAAGACTCCGACAACAGTCCCCTTTGAAAGCTTTCTAGACCAT
BS04356.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:50:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7222-RB | 618 | CG7222-PB | 1..618 | 17..634 | 3090 | 100 | Plus |
CG7222-RA | 618 | CG7222-PA | 1..618 | 17..634 | 3090 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:50:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7222-RB | 1395 | CG7222-RB | 107..724 | 17..634 | 3090 | 100 | Plus |
CG7222-RA | 1523 | CG7222-RA | 235..852 | 17..634 | 3090 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:50:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10814282..10814591 | 154..463 | 1550 | 100 | Plus |
2R | 25286936 | 2R | 10814077..10814214 | 17..154 | 690 | 100 | Plus |
2R | 25286936 | 2R | 10814872..10814962 | 462..552 | 455 | 100 | Plus |
2R | 25286936 | 2R | 10815029..10815110 | 553..634 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:50:03 has no hits.
BS04356.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:53:42 Download gff for
BS04356.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7222-RA | 1..618 | 17..634 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:29:27 Download gff for
BS04356.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7222-RA | 225..856 | 5..641 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:42:07 Download gff for
BS04356.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7222-RA | 240..851 | 22..633 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:53:42 Download gff for
BS04356.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7222-RA | 225..856 | 5..641 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:31:58 Download gff for
BS04356.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7222-RA | 240..851 | 22..633 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:31:58 Download gff for
BS04356.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10814082..10814214 | 22..154 | 100 | -> | Plus |
2R | 10814283..10814591 | 155..463 | 100 | -> | Plus |
2R | 10814874..10814962 | 464..552 | 100 | -> | Plus |
2R | 10815029..10815109 | 553..633 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:42:07 Download gff for
BS04356.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6701587..6701719 | 22..154 | 100 | -> | Plus |
arm_2R | 6701788..6702096 | 155..463 | 100 | -> | Plus |
arm_2R | 6702379..6702467 | 464..552 | 100 | -> | Plus |
arm_2R | 6702534..6702614 | 553..633 | 100 | | Plus |
BS04356.pep Sequence
Translation from 16 to 633
> BS04356.pep
MFSNGLPCNLSFPSCLSVPKDEIGNEELLPSNMGTREPVILNVYDMYWIN
EYTTSIGLGVFHSGVEAFGTEFAYGGHPFPFTGVFEISPRDHDELGDQFQ
FRQSIQIGCTDFTYEEVRRIVEELGNQFRGDRYHLMNNNCNHFSGSLTQI
LCGQEIPSWVNRLAHFSSCVPFLQRCLPKEWLTPNALQQSITTIQEREDS
DNSPL*
BS04356.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:49:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7222-PB | 205 | CG7222-PB | 1..205 | 1..205 | 1120 | 100 | Plus |
CG7222-PA | 205 | CG7222-PA | 1..205 | 1..205 | 1120 | 100 | Plus |
CG12231-PA | 183 | CG12231-PA | 14..166 | 24..175 | 426 | 50.3 | Plus |