Clone Sequence Records
BS04366.3prime Sequence
852 bp (851 high quality bases) assembled on 2005-12-01
> BS04366.3prime
ATGGTCTAGAAAGCTTTTACGCCTCCTTCTTGTGCTTGAACTTGTTCTTG
AGTAGACCGGGCAGCAAGGATGCACAGGCGCAGGCCATCAGGATGCCCAT
TGAGGTCCAGGAGAAGGCCTCGCTCGAACTAGTCATCTTCTGGAGCGTCT
TGCCCGCCTGGATGGCGATCACCGAGGGCGGTGCCACGCCGCAGAAGGTG
CCCAATGCGAAGATGTGCAGCGGCACACCGATGACTGGCGATGCCAGGTT
GATGAACCAGTTAGGCAGGATCGGTGTCATGCGCAGGAATAGCATATAGT
TGAACAAACTGTCCCGGTACTCCTCGACATGCTTCGACCACTCGCTGGTC
TTCTTCGGCCAGAAGTGACGAATCAGACGACGTCCGACCAGATTGGAAAG
TGTATAGCATAGGGTAGCGCCCAGCGCCGAACAGAAACATATGAGGAACA
GGGCGATCGGGAACTTGTACAGGAATCCCAGCAGAATCGAGAGGAACAGC
GATCCGGGAATGGCGAATGTTTGCAGGAATACGTAGGCGACCACGACGCC
AAACATCACTTCGAAGTAGTACATGTCCTTGTAGCGATCAAGGACCTTGG
CTAGCATCTTAGCATCTTGGATATCACGCGGAATTTTCAAGTGTTGTTTC
TCCGACGCGTTGAGCTCGGGGAATATGGCGTACACATAGCACATGGTGAC
CAAGCTGGCCACAAAAATGCCCGCTACGATGACCAGGGACTTCTTGGTGG
CCTTCTTCTCGTCTGCGGACATGGCCTGCTTTTGCGGAGTGGCCTGTTGT
TGTTGCTGCTGCTGCTGTTGTTGCTGTGGATTAAGATCTTGTTGCTCCTG
TG
BS04366.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:46:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8408-PA | 963 | CG8408-RA | 128..963 | 852..17 | 4180 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:25:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
stas-RA | 1882 | CG8408-RA | 573..1408 | 852..17 | 4180 | 100 | Minus |
stas-RB | 2163 | CG8408-RB | 573..897 | 852..528 | 1625 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:25:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17623695..17624205 | 17..527 | 2555 | 100 | Plus |
X | 23542271 | X | 17626938..17627135 | 655..852 | 990 | 100 | Plus |
X | 23542271 | X | 17625530..17625658 | 528..656 | 645 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-01 09:25:25 has no hits.
BS04366.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:46:30 Download gff for
BS04366.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8408-PA | 128..963 | 17..852 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:07:22 Download gff for
BS04366.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8408-PA | 128..963 | 17..852 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:35:49 Download gff for
BS04366.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stas-RA | 573..1411 | 12..852 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 10:01:18 Download gff for
BS04366.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stas-RA | 573..1411 | 12..852 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 10:01:18 Download gff for
BS04366.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17626940..17627135 | 657..852 | 100 | | Plus |
X | 17623692..17624205 | 12..527 | 99 | <- | Plus |
X | 17625530..17625658 | 528..656 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:35:49 Download gff for
BS04366.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17517725..17518238 | 12..527 | 99 | <- | Plus |
arm_X | 17519563..17519691 | 528..656 | 100 | <- | Plus |
arm_X | 17520973..17521168 | 657..852 | 100 | | Plus |
BS04366.5prime Sequence
834 bp (795 high quality bases) assembled on 2005-11-29
> BS04366.5prime
GAAGTTATCAGTCGACATGTCTTACTGCAGTGGTGTGGCCATTTCCGCTG
ACGAGGGGATTACAATGCGCAATGGCAGGGCAAAGGCGCTCCAGGAACAC
TCCCCGGATCAGGTGGCTACTCCACTGTTGCCACAGGTGCCGCCACAGGA
GCAACAAGATCTTAATCCACAGCAACAACAGCAGCAGCAGCAACAACAAC
AGGCCACTCCGCAAAAGCAGGCCATGTCCGCAGACGAGAAGAAGGCCACC
AAGAAGTCCCTGGTCATCGTAGCGGGCATTTTTGTGGCCAGCTTGGTCAC
CATGTGCTATGTGTACGCCATATTCCCCGAGCTCAACGCGTCGGAGAAAC
AACACTTGAAAATTCCGCGTGATATCCAAGATGCTAAGATGCTAGCCAAG
GTCCTTGATCGCTACAAGGACATGTACTACTTCGAAGTGATGTTTGGCGT
CGTGGTCGCCTACGTATTCCTGCAAACATTCGCCATTCCCGGATCGCTGT
TCCTCTCGATTCTGCTGGGATTCCTGTACAAGTTCCCGATCGCCCTGTTC
CTCATATGTTTCTGTTCGGCGCTGGGCGCTACCCTATGCTATACACTTTC
CAATCTGGTCGGACGTCGTCTGATTCGTCACTTCTGGCCGAAGAAGACCA
GCGAGTGGTCGAAGCATGTCGAGGAGTACCGGGACAGTTTGTTCAACTAT
ATGCTATTCCTGCGCATGACACCGATCCTGCCTAACTGGTTCATCAACCT
GGCATCGCCAGTCATCGGTGTGCCGCTGCACATCTTCGCATTGGGCACCT
TCTGCGGCGTGGCACCGCCCTCGGTGATCGCCAT
BS04366.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:46:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8408-PA | 963 | CG8408-RA | 1..818 | 17..834 | 4090 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:27:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
stas-RA | 1882 | CG8408-RA | 446..1263 | 17..834 | 4090 | 100 | Plus |
stas-RB | 2163 | CG8408-RB | 446..897 | 17..468 | 2260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:27:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17623840..17624205 | 834..469 | 1830 | 100 | Minus |
X | 23542271 | X | 17626938..17627241 | 341..38 | 1520 | 100 | Minus |
X | 23542271 | X | 17625530..17625658 | 468..340 | 645 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 04:27:45 has no hits.
BS04366.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:46:31 Download gff for
BS04366.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8408-PA | 1..818 | 17..834 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:07:23 Download gff for
BS04366.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8408-PA | 1..818 | 17..834 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 05:11:44 Download gff for
BS04366.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stas-RA | 439..1263 | 10..834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:52:10 Download gff for
BS04366.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stas-RA | 439..1263 | 10..834 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:52:10 Download gff for
BS04366.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17623840..17624205 | 469..834 | 100 | <- | Minus |
X | 17625530..17625658 | 340..468 | 100 | <- | Minus |
X | 17626940..17627240 | 39..339 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 05:11:44 Download gff for
BS04366.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17517873..17518238 | 469..834 | 100 | <- | Minus |
arm_X | 17519563..17519691 | 340..468 | 100 | <- | Minus |
arm_X | 17520973..17521273 | 39..339 | 100 | <- | Minus |
BS04366.complete Sequence
995 bp (995 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634925
> BS04366.complete
GAAGTTATCAGTCGACATGTCTTACTGCAGTGGTGTGGCCATTTCCGCTG
ACGAGGGGATTACAATGCGCAATGGCAGGGCAAAGGCGCTCCAGGAACAC
TCCCCGGATCAGGTGGCTACTCCACTGTTGCCACAGGTGCCGCCACAGGA
GCAACAAGATCTTAATCCACAGCAACAACAGCAGCAGCAGCAACAACAAC
AGGCCACTCCGCAAAAGCAGGCCATGTCCGCAGACGAGAAGAAGGCCACC
AAGAAGTCCCTGGTCATCGTAGCGGGCATTTTTGTGGCCAGCTTGGTCAC
CATGTGCTATGTGTACGCCATATTCCCCGAGCTCAACGCGTCGGAGAAAC
AACACTTGAAAATTCCGCGTGATATCCAAGATGCTAAGATGCTAGCCAAG
GTCCTTGATCGCTACAAGGACATGTACTACTTCGAAGTGATGTTTGGCGT
CGTGGTCGCCTACGTATTCCTGCAAACATTCGCCATTCCCGGATCGCTGT
TCCTCTCGATTCTGCTGGGATTCCTGTACAAGTTCCCGATCGCCCTGTTC
CTCATATGTTTCTGTTCGGCGCTGGGCGCTACCCTATGCTATACACTTTC
CAATCTGGTCGGACGTCGTCTGATTCGTCACTTCTGGCCGAAGAAGACCA
GCGAGTGGTCGAAGCATGTCGAGGAGTACCGGGACAGTTTGTTCAACTAT
ATGCTATTCCTGCGCATGACACCGATCCTGCCTAACTGGTTCATCAACCT
GGCATCGCCAGTCATCGGTGTGCCGCTGCACATCTTCGCATTGGGCACCT
TCTGCGGCGTGGCACCGCCCTCGGTGATCGCCATCCAGGCGGGCAAGACG
CTCCAGAAGATGACTAGTTCGAGCGAGGCCTTCTCCTGGACCTCAATGGG
CATCCTGATGGCCTGCGCCTGTGCATCCTTGCTGCCCGGTCTACTCAAGA
ACAAGTTCAAGCACAAGAAGGAGGCGTAAAAGCTTTCTAGACCAT
BS04366.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:50:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
stas-RA | 963 | CG8408-PA | 1..963 | 17..979 | 4815 | 100 | Plus |
stas-RB | 525 | CG8408-PB | 1..452 | 17..468 | 2260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:51:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
stas-RA | 1882 | CG8408-RA | 446..1408 | 17..979 | 4815 | 100 | Plus |
stas-RB | 2163 | CG8408-RB | 446..897 | 17..468 | 2260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:50:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17623695..17624205 | 979..469 | 2555 | 100 | Minus |
X | 23542271 | X | 17626938..17627241 | 341..38 | 1520 | 100 | Minus |
X | 23542271 | X | 17625530..17625658 | 468..340 | 645 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:50:57 has no hits.
BS04366.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:57:16 Download gff for
BS04366.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8408-RA | 1..963 | 17..979 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:33:31 Download gff for
BS04366.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8408-RA | 440..1412 | 10..984 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:32:43 Download gff for
BS04366.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stas-RA | 446..1406 | 17..977 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:39:06 Download gff for
BS04366.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stas-RA | 446..1406 | 17..977 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:39:06 Download gff for
BS04366.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17623697..17624205 | 469..977 | 100 | <- | Minus |
X | 17625530..17625658 | 340..468 | 100 | <- | Minus |
X | 17626940..17627240 | 39..339 | 100 | <- | Minus |
X | 17627429..17627450 | 17..38 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:32:43 Download gff for
BS04366.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17517730..17518238 | 469..977 | 100 | <- | Minus |
arm_X | 17519563..17519691 | 340..468 | 100 | <- | Minus |
arm_X | 17520973..17521273 | 39..339 | 100 | <- | Minus |
arm_X | 17521462..17521483 | 17..38 | 100 | | Minus |
BS04366.pep Sequence
Translation from 16 to 978
> BS04366.pep
MSYCSGVAISADEGITMRNGRAKALQEHSPDQVATPLLPQVPPQEQQDLN
PQQQQQQQQQQQATPQKQAMSADEKKATKKSLVIVAGIFVASLVTMCYVY
AIFPELNASEKQHLKIPRDIQDAKMLAKVLDRYKDMYYFEVMFGVVVAYV
FLQTFAIPGSLFLSILLGFLYKFPIALFLICFCSALGATLCYTLSNLVGR
RLIRHFWPKKTSEWSKHVEEYRDSLFNYMLFLRMTPILPNWFINLASPVI
GVPLHIFALGTFCGVAPPSVIAIQAGKTLQKMTSSSEAFSWTSMGILMAC
ACASLLPGLLKNKFKHKKEA*
BS04366.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:43:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
stas-PA | 320 | CG8408-PA | 1..320 | 1..320 | 1657 | 100 | Plus |
stas-PB | 174 | CG8408-PB | 1..150 | 1..150 | 761 | 100 | Plus |