Clone BS04366 Report

Search the DGRC for BS04366

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:43
Well:66
Vector:pDNR-Dual
Associated Gene/Transcriptstas-RA
Protein status:BS04366.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04366.3prime Sequence

852 bp (851 high quality bases) assembled on 2005-12-01

> BS04366.3prime
ATGGTCTAGAAAGCTTTTACGCCTCCTTCTTGTGCTTGAACTTGTTCTTG
AGTAGACCGGGCAGCAAGGATGCACAGGCGCAGGCCATCAGGATGCCCAT
TGAGGTCCAGGAGAAGGCCTCGCTCGAACTAGTCATCTTCTGGAGCGTCT
TGCCCGCCTGGATGGCGATCACCGAGGGCGGTGCCACGCCGCAGAAGGTG
CCCAATGCGAAGATGTGCAGCGGCACACCGATGACTGGCGATGCCAGGTT
GATGAACCAGTTAGGCAGGATCGGTGTCATGCGCAGGAATAGCATATAGT
TGAACAAACTGTCCCGGTACTCCTCGACATGCTTCGACCACTCGCTGGTC
TTCTTCGGCCAGAAGTGACGAATCAGACGACGTCCGACCAGATTGGAAAG
TGTATAGCATAGGGTAGCGCCCAGCGCCGAACAGAAACATATGAGGAACA
GGGCGATCGGGAACTTGTACAGGAATCCCAGCAGAATCGAGAGGAACAGC
GATCCGGGAATGGCGAATGTTTGCAGGAATACGTAGGCGACCACGACGCC
AAACATCACTTCGAAGTAGTACATGTCCTTGTAGCGATCAAGGACCTTGG
CTAGCATCTTAGCATCTTGGATATCACGCGGAATTTTCAAGTGTTGTTTC
TCCGACGCGTTGAGCTCGGGGAATATGGCGTACACATAGCACATGGTGAC
CAAGCTGGCCACAAAAATGCCCGCTACGATGACCAGGGACTTCTTGGTGG
CCTTCTTCTCGTCTGCGGACATGGCCTGCTTTTGCGGAGTGGCCTGTTGT
TGTTGCTGCTGCTGCTGTTGTTGCTGTGGATTAAGATCTTGTTGCTCCTG
TG

BS04366.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:46:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG8408-PA 963 CG8408-RA 128..963 852..17 4180 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:25:29
Subject Length Description Subject Range Query Range Score Percent Strand
stas-RA 1882 CG8408-RA 573..1408 852..17 4180 100 Minus
stas-RB 2163 CG8408-RB 573..897 852..528 1625 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:25:21
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17623695..17624205 17..527 2555 100 Plus
X 23542271 X 17626938..17627135 655..852 990 100 Plus
X 23542271 X 17625530..17625658 528..656 645 100 Plus
Blast to na_te.dros performed on 2015-02-01 09:25:25 has no hits.

BS04366.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:46:30 Download gff for BS04366.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8408-PA 128..963 17..852 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:07:22 Download gff for BS04366.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8408-PA 128..963 17..852 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:35:49 Download gff for BS04366.3prime
Subject Subject Range Query Range Percent Splice Strand
stas-RA 573..1411 12..852 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 10:01:18 Download gff for BS04366.3prime
Subject Subject Range Query Range Percent Splice Strand
stas-RA 573..1411 12..852 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 10:01:18 Download gff for BS04366.3prime
Subject Subject Range Query Range Percent Splice Strand
X 17626940..17627135 657..852 100   Plus
X 17623692..17624205 12..527 99 <- Plus
X 17625530..17625658 528..656 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:35:49 Download gff for BS04366.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17517725..17518238 12..527 99 <- Plus
arm_X 17519563..17519691 528..656 100 <- Plus
arm_X 17520973..17521168 657..852 100   Plus

BS04366.5prime Sequence

834 bp (795 high quality bases) assembled on 2005-11-29

> BS04366.5prime
GAAGTTATCAGTCGACATGTCTTACTGCAGTGGTGTGGCCATTTCCGCTG
ACGAGGGGATTACAATGCGCAATGGCAGGGCAAAGGCGCTCCAGGAACAC
TCCCCGGATCAGGTGGCTACTCCACTGTTGCCACAGGTGCCGCCACAGGA
GCAACAAGATCTTAATCCACAGCAACAACAGCAGCAGCAGCAACAACAAC
AGGCCACTCCGCAAAAGCAGGCCATGTCCGCAGACGAGAAGAAGGCCACC
AAGAAGTCCCTGGTCATCGTAGCGGGCATTTTTGTGGCCAGCTTGGTCAC
CATGTGCTATGTGTACGCCATATTCCCCGAGCTCAACGCGTCGGAGAAAC
AACACTTGAAAATTCCGCGTGATATCCAAGATGCTAAGATGCTAGCCAAG
GTCCTTGATCGCTACAAGGACATGTACTACTTCGAAGTGATGTTTGGCGT
CGTGGTCGCCTACGTATTCCTGCAAACATTCGCCATTCCCGGATCGCTGT
TCCTCTCGATTCTGCTGGGATTCCTGTACAAGTTCCCGATCGCCCTGTTC
CTCATATGTTTCTGTTCGGCGCTGGGCGCTACCCTATGCTATACACTTTC
CAATCTGGTCGGACGTCGTCTGATTCGTCACTTCTGGCCGAAGAAGACCA
GCGAGTGGTCGAAGCATGTCGAGGAGTACCGGGACAGTTTGTTCAACTAT
ATGCTATTCCTGCGCATGACACCGATCCTGCCTAACTGGTTCATCAACCT
GGCATCGCCAGTCATCGGTGTGCCGCTGCACATCTTCGCATTGGGCACCT
TCTGCGGCGTGGCACCGCCCTCGGTGATCGCCAT

BS04366.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:46:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG8408-PA 963 CG8408-RA 1..818 17..834 4090 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:27:48
Subject Length Description Subject Range Query Range Score Percent Strand
stas-RA 1882 CG8408-RA 446..1263 17..834 4090 100 Plus
stas-RB 2163 CG8408-RB 446..897 17..468 2260 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:27:43
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17623840..17624205 834..469 1830 100 Minus
X 23542271 X 17626938..17627241 341..38 1520 100 Minus
X 23542271 X 17625530..17625658 468..340 645 100 Minus
Blast to na_te.dros performed on 2015-02-04 04:27:45 has no hits.

BS04366.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:46:31 Download gff for BS04366.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8408-PA 1..818 17..834 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:07:23 Download gff for BS04366.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8408-PA 1..818 17..834 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 05:11:44 Download gff for BS04366.5prime
Subject Subject Range Query Range Percent Splice Strand
stas-RA 439..1263 10..834 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:52:10 Download gff for BS04366.5prime
Subject Subject Range Query Range Percent Splice Strand
stas-RA 439..1263 10..834 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:52:10 Download gff for BS04366.5prime
Subject Subject Range Query Range Percent Splice Strand
X 17623840..17624205 469..834 100 <- Minus
X 17625530..17625658 340..468 100 <- Minus
X 17626940..17627240 39..339 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 05:11:44 Download gff for BS04366.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17517873..17518238 469..834 100 <- Minus
arm_X 17519563..17519691 340..468 100 <- Minus
arm_X 17520973..17521273 39..339 100 <- Minus

BS04366.complete Sequence

995 bp (995 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634925

> BS04366.complete
GAAGTTATCAGTCGACATGTCTTACTGCAGTGGTGTGGCCATTTCCGCTG
ACGAGGGGATTACAATGCGCAATGGCAGGGCAAAGGCGCTCCAGGAACAC
TCCCCGGATCAGGTGGCTACTCCACTGTTGCCACAGGTGCCGCCACAGGA
GCAACAAGATCTTAATCCACAGCAACAACAGCAGCAGCAGCAACAACAAC
AGGCCACTCCGCAAAAGCAGGCCATGTCCGCAGACGAGAAGAAGGCCACC
AAGAAGTCCCTGGTCATCGTAGCGGGCATTTTTGTGGCCAGCTTGGTCAC
CATGTGCTATGTGTACGCCATATTCCCCGAGCTCAACGCGTCGGAGAAAC
AACACTTGAAAATTCCGCGTGATATCCAAGATGCTAAGATGCTAGCCAAG
GTCCTTGATCGCTACAAGGACATGTACTACTTCGAAGTGATGTTTGGCGT
CGTGGTCGCCTACGTATTCCTGCAAACATTCGCCATTCCCGGATCGCTGT
TCCTCTCGATTCTGCTGGGATTCCTGTACAAGTTCCCGATCGCCCTGTTC
CTCATATGTTTCTGTTCGGCGCTGGGCGCTACCCTATGCTATACACTTTC
CAATCTGGTCGGACGTCGTCTGATTCGTCACTTCTGGCCGAAGAAGACCA
GCGAGTGGTCGAAGCATGTCGAGGAGTACCGGGACAGTTTGTTCAACTAT
ATGCTATTCCTGCGCATGACACCGATCCTGCCTAACTGGTTCATCAACCT
GGCATCGCCAGTCATCGGTGTGCCGCTGCACATCTTCGCATTGGGCACCT
TCTGCGGCGTGGCACCGCCCTCGGTGATCGCCATCCAGGCGGGCAAGACG
CTCCAGAAGATGACTAGTTCGAGCGAGGCCTTCTCCTGGACCTCAATGGG
CATCCTGATGGCCTGCGCCTGTGCATCCTTGCTGCCCGGTCTACTCAAGA
ACAAGTTCAAGCACAAGAAGGAGGCGTAAAAGCTTTCTAGACCAT

BS04366.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:50:59
Subject Length Description Subject Range Query Range Score Percent Strand
stas-RA 963 CG8408-PA 1..963 17..979 4815 100 Plus
stas-RB 525 CG8408-PB 1..452 17..468 2260 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:51:00
Subject Length Description Subject Range Query Range Score Percent Strand
stas-RA 1882 CG8408-RA 446..1408 17..979 4815 100 Plus
stas-RB 2163 CG8408-RB 446..897 17..468 2260 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:50:56
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17623695..17624205 979..469 2555 100 Minus
X 23542271 X 17626938..17627241 341..38 1520 100 Minus
X 23542271 X 17625530..17625658 468..340 645 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:50:57 has no hits.

BS04366.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:57:16 Download gff for BS04366.complete
Subject Subject Range Query Range Percent Splice Strand
CG8408-RA 1..963 17..979 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:33:31 Download gff for BS04366.complete
Subject Subject Range Query Range Percent Splice Strand
CG8408-RA 440..1412 10..984 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:32:43 Download gff for BS04366.complete
Subject Subject Range Query Range Percent Splice Strand
stas-RA 446..1406 17..977 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:39:06 Download gff for BS04366.complete
Subject Subject Range Query Range Percent Splice Strand
stas-RA 446..1406 17..977 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:39:06 Download gff for BS04366.complete
Subject Subject Range Query Range Percent Splice Strand
X 17623697..17624205 469..977 100 <- Minus
X 17625530..17625658 340..468 100 <- Minus
X 17626940..17627240 39..339 100 <- Minus
X 17627429..17627450 17..38 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:32:43 Download gff for BS04366.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 17517730..17518238 469..977 100 <- Minus
arm_X 17519563..17519691 340..468 100 <- Minus
arm_X 17520973..17521273 39..339 100 <- Minus
arm_X 17521462..17521483 17..38 100   Minus

BS04366.pep Sequence

Translation from 16 to 978

> BS04366.pep
MSYCSGVAISADEGITMRNGRAKALQEHSPDQVATPLLPQVPPQEQQDLN
PQQQQQQQQQQQATPQKQAMSADEKKATKKSLVIVAGIFVASLVTMCYVY
AIFPELNASEKQHLKIPRDIQDAKMLAKVLDRYKDMYYFEVMFGVVVAYV
FLQTFAIPGSLFLSILLGFLYKFPIALFLICFCSALGATLCYTLSNLVGR
RLIRHFWPKKTSEWSKHVEEYRDSLFNYMLFLRMTPILPNWFINLASPVI
GVPLHIFALGTFCGVAPPSVIAIQAGKTLQKMTSSSEAFSWTSMGILMAC
ACASLLPGLLKNKFKHKKEA*

BS04366.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:43:02
Subject Length Description Subject Range Query Range Score Percent Strand
stas-PA 320 CG8408-PA 1..320 1..320 1657 100 Plus
stas-PB 174 CG8408-PB 1..150 1..150 761 100 Plus