Clone BS04372 Report

Search the DGRC for BS04372

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:43
Well:72
Vector:pDNR-Dual
Associated Gene/Transcriptdmpd-RA
Protein status:BS04372.pep: full length peptide match
Sequenced Size:1844

Clone Sequence Records

BS04372.3prime Sequence

934 bp (869 high quality bases) assembled on 2005-12-01

> BS04372.3prime
ATGGTCTAGAAAGCTTTTATTTACTGCGTTTGCCGGGCGTATTTACATAT
CTGTTGGCCTTTTGTACTCTACGTGCTTTTTTCGCCTCCTCCGGCTCCTC
AAGAGCCTCCGATCCGGGCGCCACATTGTCCGTTGTCGCAGCCACCCCCA
GATTCTGGGACACAGGACTGACAATCACGCCGCTTCGCTGATGATTGCCA
TAAAACAGTTTTGGGGAGTAGCCTCCCGCAGCTTTGGCAGCTCCTGCATT
TCCGGTGGCCATCGGCTGCGATTGGGACTGGGCAACCTCTGCTGCCTTCG
AGGTGGACGCTATGGCATTGGACTGGCTCTCTGATGGCATCTTGCGCTTA
AGATTCTTGGCTGCTGTGCTCACGGCCAGCAACTTGGCCGTGGTGGACTC
ATCCGGCGAGGCAAACTCCTTTAGCTCGCCCACACTAACATCGCTCTCGG
CATCCACATCTTCGTTGATGATAATAAAGTGCTCGGGATCCACACCCTGG
TTGACCAGCGCTTGAAAATCTTCAGGCGGCACCACAGGCGCCACCTTTTG
ATTGCACGAACTGCATACGGCAGGGATGGCCGGACTCTTCGAACGCCAGA
ACTGCAGCTCAGTCTTGCACTTGTTGAGCTCCTGCAAAAGGGTGGAGAAC
TTGCGAGACATCTCCTCGTTCTTCTTGTCGTTTTCGTCCAGACGATTGGC
ATACTCCAGCGTCTGCTTCTGCTGCTCCGATATTAGATTTGATTGCTCAG
CCAGCTGCTTGCTCTGCTCGGCGGCCTTGCGCTTGCAGGTGCGAAGCTCG
GTGCGCAGCACCGATAGCTGGTTATTGTACATCTTCATGCCCCTGCTGAT
CTTGCGGATGCCCTTGCGGAGCACCATATGGTTCTGAGGCGGCGAGTTGC
TGGCGCTGTCTTCGAGATCTGAACTGATGGCAAG

BS04372.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:46:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG11866-PA 1812 CG11866-RA 987..1812 842..17 4080 99.7 Minus
CG11866-PA 1812 CG11866-RA 895..982 934..847 440 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 15:22:30
Subject Length Description Subject Range Query Range Score Percent Strand
dmpd-RB 2513 CG11866-RB 1171..2088 934..17 4515 99.6 Minus
dmpd-RA 2482 CG11866-RA 1140..2057 934..17 4515 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 15:22:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10120406..10121026 637..17 3090 99.8 Minus
2R 25286936 2R 10120056..10120359 934..631 1445 98.4 Minus
Blast to na_te.dros performed on 2015-02-06 15:22:26 has no hits.

BS04372.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:46:41 Download gff for BS04372.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11866-PA 895..1812 17..934 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:07:35 Download gff for BS04372.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11866-PA 895..1812 17..934 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:11:51 Download gff for BS04372.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11866-RA 1140..2064 6..934 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 18:52:09 Download gff for BS04372.3prime
Subject Subject Range Query Range Percent Splice Strand
dmpd-RA 1140..2064 6..934 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 18:52:09 Download gff for BS04372.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 10120056..10120358 632..934 99 -> Minus
2R 10120412..10121033 6..631 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:11:51 Download gff for BS04372.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6007561..6007863 632..934 99 -> Minus
arm_2R 6007917..6008538 6..631 99   Minus

BS04372.5prime Sequence

913 bp (731 high quality bases) assembled on 2005-12-01

> BS04372.5prime
GAAGTTATCAGTCGACATGGTGTCCACCCGCCAAATGTGCAGTGGAGGCG
GTACGTCCGCTTCGGAGGGGGTTTCGCCGTTCGGGGGCGCGGGTTCGGGA
TCGGCCTCTGGAACGGGAATGGCTTCCGGATCAGCAGTGTCATCCGGATC
GGGTACTGGAGTACAAGAGCCCCCCGAGTCCACAGCAAACCGTTCCTCCG
TCCTGCGGCGAACCACCAGCTATCAGGGTAACCAGGCCCACAGTTCTTAT
CGTGTCGTCTCGGCGGGCAGCCTGGCCGAGTCCGCCAGTGCGGTGACTCG
CCTCCACTCGTACACCATGCAGATGCAACGGCAGCGTCCACCGACTGCCA
CCACCACCACCACCACCAGCGCACCCAGTCTGTACGATCTTCCCAACGAG
CTGATTGAGAAGATCCTCAGCTACGTGGACTACAAGAAAGTTTCAAATCT
CAGATTGGTGTCGCACCGCATGAACGACATTTGCATGGCCATGCTGAACA
CAGCCTTCACCAAGCAGATCAAGACCACATTGAGCCGCTTCCAGGCGATC
AAGGCCAGCATGCCGCGCCGGGAGTCCCATCGTCGTAATCATCCGTTGGC
CTGCGAGTGCGACATCATCGAGACATGCTACATGCGTCTATCCCTGCTCC
AGATGTCCATGGGCAAGCACATCGAGCGGGGCCATTGTTGCTTCTTTCCG
GGCGCCATACTAGACGAAGTCCAGGCGATTCTCAATTATATCAGTATTAC
GCCCAGGCTGCAGCGACCTTATCGGGTAACCGACGAGCTCTTCGATCTCT
CCACTATGGCCATGGAATACTTTTAGGACCGCATCGAGGCCACGCTACCG
GGGCTGGCGTATTTCACAAGGACTTCTATACGCTGCCCACTACAACTAAA
CCGACCCACGCTT

BS04372.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:46:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG11866-PA 1812 CG11866-RA 1..850 17..866 4175 99.6 Plus
CG11866-PA 1812 CG11866-RA 851..884 866..899 170 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:22:14
Subject Length Description Subject Range Query Range Score Percent Strand
dmpd-RB 2513 CG11866-RB 277..1173 17..913 4380 99.3 Plus
dmpd-RA 2482 CG11866-RA 246..1142 17..913 4380 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:22:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10118102..10118544 17..459 2200 99.8 Plus
2R 25286936 2R 10119478..10119727 457..706 1235 99.6 Plus
2R 25286936 2R 10119792..10119985 707..899 905 99 Plus
Blast to na_te.dros performed on 2015-02-12 05:22:11 has no hits.

BS04372.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:46:42 Download gff for BS04372.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11866-PA 1..897 17..913 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:07:36 Download gff for BS04372.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11866-PA 1..897 17..913 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:31:40 Download gff for BS04372.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11866-RA 241..1142 10..913 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:35:55 Download gff for BS04372.5prime
Subject Subject Range Query Range Percent Splice Strand
dmpd-RA 241..1142 10..913 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:35:55 Download gff for BS04372.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 10118099..10118542 14..457 99 -> Plus
2R 10119479..10119727 458..706 99 -> Plus
2R 10119792..10119990 707..905 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:31:40 Download gff for BS04372.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6005604..6006047 14..457 99 -> Plus
arm_2R 6006984..6007232 458..706 99 -> Plus
arm_2R 6007297..6007495 707..905 98   Plus

BS04372.complete Sequence

1844 bp assembled on 2008-08-14

GenBank Submission: FJ634926

> BS04372.complete
GAAGTTATCAGTCGACATGGTGTCCACCCGCCAAATGTGCAGTGGAGGCG
GTACGTCCGCTTCGGAGGGGGTTTCGCCGTTCGGGGGCGCGGGTTCGGGA
TCGGCCTCTGGAACGGGAATGGCTTCCGGATCAGCAGTGTCATCCGGATC
GGGTACTGGAGTACAAGAGCCCCCCGAGTCCACAGCAAACCGTTCCTCCG
TCCTGCGGCGAACCACCAGCTATCAGGGTAACCAGGCCCACAGTTCTTAT
CGTGTCGTCTCGGCGGGCAGCCTGGCCGAGTCCGCCAGTGCGGTGACTCG
CCTCCACTCGTACACCATGCAGATGCAACGGCAGCGTCCACCGACTGCCA
CCACCACCACCACCACCAGCGCACCCAGTCTGTACGATCTTCCCAACGAG
CTGATTGAGAAGATCCTCAGCTACGTGGACTACAAGAAAGTTTCAAATCT
CAGATTGGTGTCGCACCGCATGAACGACATTTGCATGGCCATGCTGAACA
CAGCCTTCACCAAGCAGATCAAGACCACATTGAGCCGCTTCCAGGCGATC
AAGGCCAGCATGCCGCGCCGGGAGTCCCATCGTCGTAATCATCCGTTGGC
CTGCGAGTGCGACATCATCGAGACATGCTACATGCGTCTATCCCTGCTCC
AGATGTCCATGGGCAAGCACATCGAGCGGGGCCATTGTTGCTTCTTTCCG
GGCGCCATACTAGACGAAGTCCAGGCGATTCTCAATTATATCAGTATTAC
GCCCAGGCTGCAGCGACCTTATCGGGTAACCGACGAGCTCTTCGATCTCT
CCACTATGGCCATGGAATACTTTAAGGACCGCATCGAGGCCACGCTACCG
GGGCTGGCGTATTTCAACAAGGACTTCTATACGCTGCCCACTACAACTAA
GCGACCCACGCTTGCCATCAGTTCAGATCTCGAAGACAGCGCCAGCAACT
CGCCGCCTCAGAACCATATGGTGCTCCGCAAGGGCATCCGCAAGATCAAG
CAGGGCATGAAGATGTACAATAACCAGCTATCGGTGCTGCGCACCGAGCT
TCGCACCTGCAAGCGCAAGGCCGCCGAGCAGAGCAAGCAGCTGGCTGAGC
AATCAAATCTAATATCGGAGCAGCAGAAGCAGACGCTGGAGTATGCCAAT
CGTCTGGACGAAAACGACAAGAAGAACGAGGAGATGTCTCGCAAGTTCTC
CACCCTTTTGCAGGAGCTCAACAAGTGCAAGACTGAGCTGCAGTTCTGGC
GTTCGAAGAGTCCGGCCATCCCTGCCGTATGCAGTTCGTGCAATCAAAAG
GTGGCGCCTGTGGTGCCGCCTGAAGATTTTCAAGCGCTGGTCAACCAGGG
TGTGGATCCCGAGCACTTTATTATCATCAACGAAGATGTGGATGCCGAGA
GCGATGTTAGTGTGGGCGAGCTAAAGGAGTTTGCCTCGCCGGATGAGTCC
ACCACGGCCAAGTTGCTGGCCGTGAGCACAGCAGCCAAGAATCTTAAGCG
CAAGATGCCATCAGAGAGCCAGTCCAATGCCATAGCGTCCACCTCGAAGG
CAGCAGAGGTTGCCCAGTCCCAATCGCAGCCGATGGCCACCGGAAATGCA
GGAGCTGCCAAAGCTGCGGGAGGCTACTCCCCAAAACTGTTTTATGGCAA
TCATCAGCGAAGCGGCGTGATTGTCAGTCCTGTGTCCCAGAATCTGGGGG
TGGCTGCGACAACGGACAATGTGGCGCCCGGATCGGAGGCTCTTGAGGAG
CCGGAGGAGGCGAAAAAAGCACGTAGAGTACAAAAGGCCAACAGATATGT
AAATACGCCCGGCAAACGCAGTAAATAAAAGCTTTCTAGACCAT

BS04372.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:00:59
Subject Length Description Subject Range Query Range Score Percent Strand
dmpd-RB 1812 CG11866-PB 1..1812 17..1828 9000 99.8 Plus
dmpd-RA 1812 CG11866-PA 1..1812 17..1828 9000 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:01:00
Subject Length Description Subject Range Query Range Score Percent Strand
dmpd-RB 2513 CG11866-RB 277..2088 17..1828 9000 99.8 Plus
dmpd-RA 2482 CG11866-RA 246..2057 17..1828 9000 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:00:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10120406..10121026 1208..1828 3090 99.8 Plus
2R 25286936 2R 10118102..10118544 17..459 2200 99.8 Plus
2R 25286936 2R 10120051..10120359 906..1214 1530 99.7 Plus
2R 25286936 2R 10119478..10119727 457..706 1235 99.6 Plus
2R 25286936 2R 10119792..10119990 707..905 995 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:00:58 has no hits.

BS04372.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:43:17 Download gff for BS04372.complete
Subject Subject Range Query Range Percent Splice Strand
CG11866-RA 242..2065 10..1839 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:52 Download gff for BS04372.complete
Subject Subject Range Query Range Percent Splice Strand
CG11866-RA 246..2055 17..1826 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:08:47 Download gff for BS04372.complete
Subject Subject Range Query Range Percent Splice Strand
CG11866-RA 247..2056 17..1826 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:08:22 Download gff for BS04372.complete
Subject Subject Range Query Range Percent Splice Strand
dmpd-RA 246..2055 17..1826 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:08:22 Download gff for BS04372.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10119479..10119727 458..706 99 -> Plus
2R 10119792..10119990 707..905 100 -> Plus
2R 10120051..10120358 906..1213 99 -> Plus
2R 10118102..10118542 17..457 99 -> Plus
2R 10120412..10121024 1214..1826 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:52 Download gff for BS04372.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6005607..6006047 17..457 99 -> Plus
arm_2R 6006984..6007232 458..706 99 -> Plus
arm_2R 6007297..6007495 707..905 100 -> Plus
arm_2R 6007556..6007863 906..1213 99 -> Plus
arm_2R 6007917..6008529 1214..1826 99   Plus

BS04372.pep Sequence

Translation from 16 to 1827

> BS04372.pep
MVSTRQMCSGGGTSASEGVSPFGGAGSGSASGTGMASGSAVSSGSGTGVQ
EPPESTANRSSVLRRTTSYQGNQAHSSYRVVSAGSLAESASAVTRLHSYT
MQMQRQRPPTATTTTTTSAPSLYDLPNELIEKILSYVDYKKVSNLRLVSH
RMNDICMAMLNTAFTKQIKTTLSRFQAIKASMPRRESHRRNHPLACECDI
IETCYMRLSLLQMSMGKHIERGHCCFFPGAILDEVQAILNYISITPRLQR
PYRVTDELFDLSTMAMEYFKDRIEATLPGLAYFNKDFYTLPTTTKRPTLA
ISSDLEDSASNSPPQNHMVLRKGIRKIKQGMKMYNNQLSVLRTELRTCKR
KAAEQSKQLAEQSNLISEQQKQTLEYANRLDENDKKNEEMSRKFSTLLQE
LNKCKTELQFWRSKSPAIPAVCSSCNQKVAPVVPPEDFQALVNQGVDPEH
FIIINEDVDAESDVSVGELKEFASPDESTTAKLLAVSTAAKNLKRKMPSE
SQSNAIASTSKAAEVAQSQSQPMATGNAGAAKAAGGYSPKLFYGNHQRSG
VIVSPVSQNLGVAATTDNVAPGSEALEEPEEAKKARRVQKANRYVNTPGK
RSK*

BS04372.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:19:35
Subject Length Description Subject Range Query Range Score Percent Strand
dmpd-PB 603 CG11866-PB 1..603 1..603 3061 100 Plus
dmpd-PA 603 CG11866-PA 1..603 1..603 3061 100 Plus
pall-PA 314 CG3428-PA 2..284 121..382 305 30.2 Plus