Clone Sequence Records
BS04372.3prime Sequence
934 bp (869 high quality bases) assembled on 2005-12-01
> BS04372.3prime
ATGGTCTAGAAAGCTTTTATTTACTGCGTTTGCCGGGCGTATTTACATAT
CTGTTGGCCTTTTGTACTCTACGTGCTTTTTTCGCCTCCTCCGGCTCCTC
AAGAGCCTCCGATCCGGGCGCCACATTGTCCGTTGTCGCAGCCACCCCCA
GATTCTGGGACACAGGACTGACAATCACGCCGCTTCGCTGATGATTGCCA
TAAAACAGTTTTGGGGAGTAGCCTCCCGCAGCTTTGGCAGCTCCTGCATT
TCCGGTGGCCATCGGCTGCGATTGGGACTGGGCAACCTCTGCTGCCTTCG
AGGTGGACGCTATGGCATTGGACTGGCTCTCTGATGGCATCTTGCGCTTA
AGATTCTTGGCTGCTGTGCTCACGGCCAGCAACTTGGCCGTGGTGGACTC
ATCCGGCGAGGCAAACTCCTTTAGCTCGCCCACACTAACATCGCTCTCGG
CATCCACATCTTCGTTGATGATAATAAAGTGCTCGGGATCCACACCCTGG
TTGACCAGCGCTTGAAAATCTTCAGGCGGCACCACAGGCGCCACCTTTTG
ATTGCACGAACTGCATACGGCAGGGATGGCCGGACTCTTCGAACGCCAGA
ACTGCAGCTCAGTCTTGCACTTGTTGAGCTCCTGCAAAAGGGTGGAGAAC
TTGCGAGACATCTCCTCGTTCTTCTTGTCGTTTTCGTCCAGACGATTGGC
ATACTCCAGCGTCTGCTTCTGCTGCTCCGATATTAGATTTGATTGCTCAG
CCAGCTGCTTGCTCTGCTCGGCGGCCTTGCGCTTGCAGGTGCGAAGCTCG
GTGCGCAGCACCGATAGCTGGTTATTGTACATCTTCATGCCCCTGCTGAT
CTTGCGGATGCCCTTGCGGAGCACCATATGGTTCTGAGGCGGCGAGTTGC
TGGCGCTGTCTTCGAGATCTGAACTGATGGCAAG
BS04372.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:46:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11866-PA | 1812 | CG11866-RA | 987..1812 | 842..17 | 4080 | 99.7 | Minus |
CG11866-PA | 1812 | CG11866-RA | 895..982 | 934..847 | 440 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 15:22:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dmpd-RB | 2513 | CG11866-RB | 1171..2088 | 934..17 | 4515 | 99.6 | Minus |
dmpd-RA | 2482 | CG11866-RA | 1140..2057 | 934..17 | 4515 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 15:22:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10120406..10121026 | 637..17 | 3090 | 99.8 | Minus |
2R | 25286936 | 2R | 10120056..10120359 | 934..631 | 1445 | 98.4 | Minus |
Blast to na_te.dros performed on 2015-02-06 15:22:26 has no hits.
BS04372.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:46:41 Download gff for
BS04372.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11866-PA | 895..1812 | 17..934 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:07:35 Download gff for
BS04372.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11866-PA | 895..1812 | 17..934 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:11:51 Download gff for
BS04372.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11866-RA | 1140..2064 | 6..934 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 18:52:09 Download gff for
BS04372.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dmpd-RA | 1140..2064 | 6..934 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 18:52:09 Download gff for
BS04372.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10120056..10120358 | 632..934 | 99 | -> | Minus |
2R | 10120412..10121033 | 6..631 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:11:51 Download gff for
BS04372.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6007561..6007863 | 632..934 | 99 | -> | Minus |
arm_2R | 6007917..6008538 | 6..631 | 99 | | Minus |
BS04372.5prime Sequence
913 bp (731 high quality bases) assembled on 2005-12-01
> BS04372.5prime
GAAGTTATCAGTCGACATGGTGTCCACCCGCCAAATGTGCAGTGGAGGCG
GTACGTCCGCTTCGGAGGGGGTTTCGCCGTTCGGGGGCGCGGGTTCGGGA
TCGGCCTCTGGAACGGGAATGGCTTCCGGATCAGCAGTGTCATCCGGATC
GGGTACTGGAGTACAAGAGCCCCCCGAGTCCACAGCAAACCGTTCCTCCG
TCCTGCGGCGAACCACCAGCTATCAGGGTAACCAGGCCCACAGTTCTTAT
CGTGTCGTCTCGGCGGGCAGCCTGGCCGAGTCCGCCAGTGCGGTGACTCG
CCTCCACTCGTACACCATGCAGATGCAACGGCAGCGTCCACCGACTGCCA
CCACCACCACCACCACCAGCGCACCCAGTCTGTACGATCTTCCCAACGAG
CTGATTGAGAAGATCCTCAGCTACGTGGACTACAAGAAAGTTTCAAATCT
CAGATTGGTGTCGCACCGCATGAACGACATTTGCATGGCCATGCTGAACA
CAGCCTTCACCAAGCAGATCAAGACCACATTGAGCCGCTTCCAGGCGATC
AAGGCCAGCATGCCGCGCCGGGAGTCCCATCGTCGTAATCATCCGTTGGC
CTGCGAGTGCGACATCATCGAGACATGCTACATGCGTCTATCCCTGCTCC
AGATGTCCATGGGCAAGCACATCGAGCGGGGCCATTGTTGCTTCTTTCCG
GGCGCCATACTAGACGAAGTCCAGGCGATTCTCAATTATATCAGTATTAC
GCCCAGGCTGCAGCGACCTTATCGGGTAACCGACGAGCTCTTCGATCTCT
CCACTATGGCCATGGAATACTTTTAGGACCGCATCGAGGCCACGCTACCG
GGGCTGGCGTATTTCACAAGGACTTCTATACGCTGCCCACTACAACTAAA
CCGACCCACGCTT
BS04372.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:46:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11866-PA | 1812 | CG11866-RA | 1..850 | 17..866 | 4175 | 99.6 | Plus |
CG11866-PA | 1812 | CG11866-RA | 851..884 | 866..899 | 170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:22:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dmpd-RB | 2513 | CG11866-RB | 277..1173 | 17..913 | 4380 | 99.3 | Plus |
dmpd-RA | 2482 | CG11866-RA | 246..1142 | 17..913 | 4380 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:22:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10118102..10118544 | 17..459 | 2200 | 99.8 | Plus |
2R | 25286936 | 2R | 10119478..10119727 | 457..706 | 1235 | 99.6 | Plus |
2R | 25286936 | 2R | 10119792..10119985 | 707..899 | 905 | 99 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:22:11 has no hits.
BS04372.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:46:42 Download gff for
BS04372.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11866-PA | 1..897 | 17..913 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:07:36 Download gff for
BS04372.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11866-PA | 1..897 | 17..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:31:40 Download gff for
BS04372.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11866-RA | 241..1142 | 10..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:35:55 Download gff for
BS04372.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dmpd-RA | 241..1142 | 10..913 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:35:55 Download gff for
BS04372.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10118099..10118542 | 14..457 | 99 | -> | Plus |
2R | 10119479..10119727 | 458..706 | 99 | -> | Plus |
2R | 10119792..10119990 | 707..905 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:31:40 Download gff for
BS04372.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6005604..6006047 | 14..457 | 99 | -> | Plus |
arm_2R | 6006984..6007232 | 458..706 | 99 | -> | Plus |
arm_2R | 6007297..6007495 | 707..905 | 98 | | Plus |
BS04372.complete Sequence
1844 bp assembled on 2008-08-14
GenBank Submission: FJ634926
> BS04372.complete
GAAGTTATCAGTCGACATGGTGTCCACCCGCCAAATGTGCAGTGGAGGCG
GTACGTCCGCTTCGGAGGGGGTTTCGCCGTTCGGGGGCGCGGGTTCGGGA
TCGGCCTCTGGAACGGGAATGGCTTCCGGATCAGCAGTGTCATCCGGATC
GGGTACTGGAGTACAAGAGCCCCCCGAGTCCACAGCAAACCGTTCCTCCG
TCCTGCGGCGAACCACCAGCTATCAGGGTAACCAGGCCCACAGTTCTTAT
CGTGTCGTCTCGGCGGGCAGCCTGGCCGAGTCCGCCAGTGCGGTGACTCG
CCTCCACTCGTACACCATGCAGATGCAACGGCAGCGTCCACCGACTGCCA
CCACCACCACCACCACCAGCGCACCCAGTCTGTACGATCTTCCCAACGAG
CTGATTGAGAAGATCCTCAGCTACGTGGACTACAAGAAAGTTTCAAATCT
CAGATTGGTGTCGCACCGCATGAACGACATTTGCATGGCCATGCTGAACA
CAGCCTTCACCAAGCAGATCAAGACCACATTGAGCCGCTTCCAGGCGATC
AAGGCCAGCATGCCGCGCCGGGAGTCCCATCGTCGTAATCATCCGTTGGC
CTGCGAGTGCGACATCATCGAGACATGCTACATGCGTCTATCCCTGCTCC
AGATGTCCATGGGCAAGCACATCGAGCGGGGCCATTGTTGCTTCTTTCCG
GGCGCCATACTAGACGAAGTCCAGGCGATTCTCAATTATATCAGTATTAC
GCCCAGGCTGCAGCGACCTTATCGGGTAACCGACGAGCTCTTCGATCTCT
CCACTATGGCCATGGAATACTTTAAGGACCGCATCGAGGCCACGCTACCG
GGGCTGGCGTATTTCAACAAGGACTTCTATACGCTGCCCACTACAACTAA
GCGACCCACGCTTGCCATCAGTTCAGATCTCGAAGACAGCGCCAGCAACT
CGCCGCCTCAGAACCATATGGTGCTCCGCAAGGGCATCCGCAAGATCAAG
CAGGGCATGAAGATGTACAATAACCAGCTATCGGTGCTGCGCACCGAGCT
TCGCACCTGCAAGCGCAAGGCCGCCGAGCAGAGCAAGCAGCTGGCTGAGC
AATCAAATCTAATATCGGAGCAGCAGAAGCAGACGCTGGAGTATGCCAAT
CGTCTGGACGAAAACGACAAGAAGAACGAGGAGATGTCTCGCAAGTTCTC
CACCCTTTTGCAGGAGCTCAACAAGTGCAAGACTGAGCTGCAGTTCTGGC
GTTCGAAGAGTCCGGCCATCCCTGCCGTATGCAGTTCGTGCAATCAAAAG
GTGGCGCCTGTGGTGCCGCCTGAAGATTTTCAAGCGCTGGTCAACCAGGG
TGTGGATCCCGAGCACTTTATTATCATCAACGAAGATGTGGATGCCGAGA
GCGATGTTAGTGTGGGCGAGCTAAAGGAGTTTGCCTCGCCGGATGAGTCC
ACCACGGCCAAGTTGCTGGCCGTGAGCACAGCAGCCAAGAATCTTAAGCG
CAAGATGCCATCAGAGAGCCAGTCCAATGCCATAGCGTCCACCTCGAAGG
CAGCAGAGGTTGCCCAGTCCCAATCGCAGCCGATGGCCACCGGAAATGCA
GGAGCTGCCAAAGCTGCGGGAGGCTACTCCCCAAAACTGTTTTATGGCAA
TCATCAGCGAAGCGGCGTGATTGTCAGTCCTGTGTCCCAGAATCTGGGGG
TGGCTGCGACAACGGACAATGTGGCGCCCGGATCGGAGGCTCTTGAGGAG
CCGGAGGAGGCGAAAAAAGCACGTAGAGTACAAAAGGCCAACAGATATGT
AAATACGCCCGGCAAACGCAGTAAATAAAAGCTTTCTAGACCAT
BS04372.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:00:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dmpd-RB | 1812 | CG11866-PB | 1..1812 | 17..1828 | 9000 | 99.8 | Plus |
dmpd-RA | 1812 | CG11866-PA | 1..1812 | 17..1828 | 9000 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:01:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dmpd-RB | 2513 | CG11866-RB | 277..2088 | 17..1828 | 9000 | 99.8 | Plus |
dmpd-RA | 2482 | CG11866-RA | 246..2057 | 17..1828 | 9000 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:00:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10120406..10121026 | 1208..1828 | 3090 | 99.8 | Plus |
2R | 25286936 | 2R | 10118102..10118544 | 17..459 | 2200 | 99.8 | Plus |
2R | 25286936 | 2R | 10120051..10120359 | 906..1214 | 1530 | 99.7 | Plus |
2R | 25286936 | 2R | 10119478..10119727 | 457..706 | 1235 | 99.6 | Plus |
2R | 25286936 | 2R | 10119792..10119990 | 707..905 | 995 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:00:58 has no hits.
BS04372.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:43:17 Download gff for
BS04372.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11866-RA | 242..2065 | 10..1839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:52 Download gff for
BS04372.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11866-RA | 246..2055 | 17..1826 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:08:47 Download gff for
BS04372.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11866-RA | 247..2056 | 17..1826 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:08:22 Download gff for
BS04372.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dmpd-RA | 246..2055 | 17..1826 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:08:22 Download gff for
BS04372.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10119479..10119727 | 458..706 | 99 | -> | Plus |
2R | 10119792..10119990 | 707..905 | 100 | -> | Plus |
2R | 10120051..10120358 | 906..1213 | 99 | -> | Plus |
2R | 10118102..10118542 | 17..457 | 99 | -> | Plus |
2R | 10120412..10121024 | 1214..1826 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:52 Download gff for
BS04372.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6005607..6006047 | 17..457 | 99 | -> | Plus |
arm_2R | 6006984..6007232 | 458..706 | 99 | -> | Plus |
arm_2R | 6007297..6007495 | 707..905 | 100 | -> | Plus |
arm_2R | 6007556..6007863 | 906..1213 | 99 | -> | Plus |
arm_2R | 6007917..6008529 | 1214..1826 | 99 | | Plus |
BS04372.pep Sequence
Translation from 16 to 1827
> BS04372.pep
MVSTRQMCSGGGTSASEGVSPFGGAGSGSASGTGMASGSAVSSGSGTGVQ
EPPESTANRSSVLRRTTSYQGNQAHSSYRVVSAGSLAESASAVTRLHSYT
MQMQRQRPPTATTTTTTSAPSLYDLPNELIEKILSYVDYKKVSNLRLVSH
RMNDICMAMLNTAFTKQIKTTLSRFQAIKASMPRRESHRRNHPLACECDI
IETCYMRLSLLQMSMGKHIERGHCCFFPGAILDEVQAILNYISITPRLQR
PYRVTDELFDLSTMAMEYFKDRIEATLPGLAYFNKDFYTLPTTTKRPTLA
ISSDLEDSASNSPPQNHMVLRKGIRKIKQGMKMYNNQLSVLRTELRTCKR
KAAEQSKQLAEQSNLISEQQKQTLEYANRLDENDKKNEEMSRKFSTLLQE
LNKCKTELQFWRSKSPAIPAVCSSCNQKVAPVVPPEDFQALVNQGVDPEH
FIIINEDVDAESDVSVGELKEFASPDESTTAKLLAVSTAAKNLKRKMPSE
SQSNAIASTSKAAEVAQSQSQPMATGNAGAAKAAGGYSPKLFYGNHQRSG
VIVSPVSQNLGVAATTDNVAPGSEALEEPEEAKKARRVQKANRYVNTPGK
RSK*
BS04372.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:19:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dmpd-PB | 603 | CG11866-PB | 1..603 | 1..603 | 3061 | 100 | Plus |
dmpd-PA | 603 | CG11866-PA | 1..603 | 1..603 | 3061 | 100 | Plus |
pall-PA | 314 | CG3428-PA | 2..284 | 121..382 | 305 | 30.2 | Plus |