Clone BS04378 Report

Search the DGRC for BS04378

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:43
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptCG6073-RA
Protein status:BS04378.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04378.3prime Sequence

868 bp (763 high quality bases) assembled on 2005-12-01

> BS04378.3prime
ATGGTCTAGAAAGCTTTCAATCAAGCAAACTCTTCACATAGGCGGCGTCC
TCCTGGACGAATTTTTCTGACTGCTCTGCAGGCACTTCCACTTCGGTTTT
ATAGTTGTCCAGGCCAATCTCTTCCTCTTTCTTGATCAGAATGTCCACCA
CGTTCTCGCAGGCCAGCAGACAGTCGCTGTCCTTGCCCACCTTGGCCTCC
CACTTGTGGTACTCCCGCAGGATCTCATAGACGCCCCTGGAGCGCAGGAT
TTCCCGGCTGCGACGTGTGGAGCACAGTTGCAGCAAACACTCCAGCAGCA
TTTTCCGCAAATCGGGATCCTCTTCGCGCGTTTTACTTTCAGGCAGGTAC
TGCAGTTCGATGGGCAACAATTCATTGTCCTCGTCGCTGAACTCTTCTGG
ACCGCACAGTGGCTGCAGGATTGCCACCAGAATACTGCTCTGCTCGTTTA
GGATCACATCGTGGTAGACAGTGTCGAAGCAAACGTTCTTCAGAATGCCA
ATGGTGCCGCCACGCCGCACTACACTTCCCTCGAATGAGGCAAAGGGCAG
TAGTTTCTCCAGCAACTCGTATTTCCGATGGCAGCACAGTTCCCTGCCCC
GAGAAACCTGGGTCAGATTGCAGAAGATGGGCGCCAGATAATGCAGCTTG
GCCTTCTTTTTGTTGTAGTCCAATTGCGCGAAGGCCTTTGCCAAGCGGGG
TAGCGTGTGATCGTCTCTTTCTAGCGTGTCCAGGATCTCGTGGACCAGAG
ATTCCACTCGCGTTAGGTTGCTCAAGACCATGCTCCAGGGATCAGCCAGA
TCGGATTGCTCGTTGGTTATTTCCTTGGCAGCCACTTCTACGATGGCAAA
TGGCGGTTGCAATTGTTT

BS04378.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:46:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG6073-PA 1110 CG6073-RA 259..1110 868..17 4185 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:26:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG6073-RB 1275 CG6073-RB 349..1201 868..16 4220 99.6 Minus
CG6073-RA 1564 CG6073-RA 349..1201 868..16 4220 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:26:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26187771..26188275 350..854 2495 99.6 Plus
3R 32079331 3R 26187381..26187717 16..352 1670 99.7 Plus
Blast to na_te.dros performed on 2015-02-10 19:26:22 has no hits.

BS04378.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:46:51 Download gff for BS04378.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6073-PA 259..1110 17..868 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:07:48 Download gff for BS04378.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6073-PA 259..1110 17..868 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:20:40 Download gff for BS04378.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6073-RA 349..1201 16..868 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:39:20 Download gff for BS04378.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6073-RA 349..1201 16..868 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:39:20 Download gff for BS04378.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 26187381..26187714 16..349 99 <- Plus
3R 26187771..26188274 350..853 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:20:40 Download gff for BS04378.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22013103..22013436 16..349 99 <- Plus
arm_3R 22013493..22013996 350..853 99 <- Plus

BS04378.5prime Sequence

744 bp (717 high quality bases) assembled on 2005-11-29

> BS04378.5prime
GAAGTTATCAGTCGACATGGAGACTGTGAAGGAACTGGTTCAATTCATGC
AACCGAATCAGCGGCTGGACTTAAAGGCAGTAGCCCTAACACATGTTTTA
GGATTGACTGGCAGCTCAGAGGGCAAATCAGCAATACTTTCACTAGATGA
AATGCTAATGGCCATTTTTGGACTGACATTCGATGCAAATCAAACGGTGG
CCAAGGATGCGGTTTTAAGCCTAATAAATTTAACGTCCGAAGAGGAAGCA
GCAATTAAAGTTTTCCAACTGGCGAAACAATTGCAACCGCCATTTGCCAT
CGTAGAAGTGGCTGCCAAGGAAATAACCAACGAGCAATCCGATCTGGCTG
ATCCCTGGAGCATGGTCTTGAGCAACCTAACGCGAGTGGAATCTCTGGTC
CACGAGATCCTGGACACGCTAGAAAGAGACGATCACACGCTACCCCGCTT
GGCAAAGGCCTTCGCGCAATTGGACTACAACAAAAAGAAGGCCAAGCTGC
ATTATCTGGCGCCCATCTTCTGCAATCTGACCCAGGTTTCTCGGGGCAGG
GAACTGTGCTGCCATCGGAAATACGAGTTGCTGGAGAAACTACTGCCCTT
TGCCTCATTCGAGGGAAGTGTAGTGCGGCGTGGCGGCACCATTGGCATTC
TGAAGAACGTTTGCTTCGACACTGTCTACCACGATGTGATCCTAAACGAG
CAGAGCAGTATTCTGGTGGCAATCCTGCAGCCACTGTGCGGTCC

BS04378.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:46:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG6073-PA 1110 CG6073-RA 1..728 17..744 3590 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:43:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG6073-RB 1275 CG6073-RB 91..818 17..744 3610 99.7 Plus
CG6073-RA 1564 CG6073-RA 91..818 17..744 3610 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:43:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26187820..26188275 744..289 2250 99.6 Minus
3R 32079331 3R 26188332..26188521 289..100 950 100 Minus
3R 32079331 3R 26188632..26188717 102..17 430 100 Minus
Blast to na_te.dros performed on 2015-02-11 15:43:45 has no hits.

BS04378.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:46:52 Download gff for BS04378.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6073-PA 1..728 17..744 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:07:50 Download gff for BS04378.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6073-PA 1..728 17..744 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 11:00:44 Download gff for BS04378.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6073-RA 91..818 17..744 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:16:53 Download gff for BS04378.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6073-RA 91..818 17..744 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:16:53 Download gff for BS04378.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 26187820..26188274 290..744 99 <- Minus
3R 26188332..26188519 102..289 100 <- Minus
3R 26188633..26188717 17..101 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 11:00:44 Download gff for BS04378.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22013542..22013996 290..744 99 <- Minus
arm_3R 22014054..22014241 102..289 100 <- Minus
arm_3R 22014355..22014439 17..101 100   Minus

BS04378.complete Sequence

1142 bp (1142 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ638776

> BS04378.complete
GAAGTTATCAGTCGACATGGAGACTGTGAAGGAACTGGTTCAATTCATGC
AACCGAATCAGCGGCTGGACTTAAAGGCAGTAGCCCTAACACATGTTTTA
GGATTGACTGGCAGCTCAGAGGGCAAATCAGCAATACTTTCACTAGATGA
AATGCTAATGGCCATTTTTGGACTGACATTCGATGCAAATCAAACGGTGG
CCAAGGATGCGGTTTTAAGCCTAATAAATTTAACGTCCGAAGAGGAAGCA
GCAATTAAAGTTTTCCAACTGGCGAAACAATTGCAACCGCCATTTGCCAT
CGTAGAAGTGGCTGCCAAGGAAATAACCAACGAGCAATCCGATCTGGCTG
ATCCCTGGAGCATGGTCTTGAGCAACCTAACGCGAGTGGAATCTCTGGTC
CACGAGATCCTGGACACGCTAGAAAGAGACGATCACACGCTACCCCGCTT
GGCAAAGGCCTTCGCGCAATTGGACTACAACAAAAAGAAGGCCAAGCTGC
ATTATCTGGCGCCCATCTTCTGCAATCTGACCCAGGTTTCTCGGGGCAGG
GAACTGTGCTGCCATCGGAAATACGAGTTGCTGGAGAAACTACTGCCCTT
TGCCTCATTCGAGGGAAGTGTAGTGCGGCGTGGCGGCACCATTGGCATTC
TGAAGAACGTTTGCTTCGACACTGTCTACCACGATGTGATCCTAAACGAG
CAGAGCAGTATTCTGGTGGCAATCCTGCAGCCACTGTGCGGTCCAGAAGA
GTTCAGCGACGAGGACAATGAATTGTTGCCCATCGAACTGCAGTACCTGC
CTGAAAGTAAAACGCGCGAAGAGGATCCCGATTTGCGGAAAATGCTGCTG
GAGTGTTTGCTGCAACTGTGCTCCACACGTCGCAGCCGGGAAATCCTGCG
CTCCAGGGGCGTCTATGAGATCCTGCGGGAGTACCACAAGTGGGAGGCCA
AGGTGGGCAAGGACAGCGACTGTCTGCTGGCCTGCGAGAACGTGGTGGAC
ATTCTGATCAAGAAAGAGGAAGAGATTGGCCTGGACAACTATAAAACCGA
AGTGGAAGTGCCTGCAGAGCAGTCAGAAAAATTCGTCCAGGAGGACGCCG
CCTATGTGAAGAGTTTGCTTGATTGAAAGCTTTCTAGACCAT

BS04378.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:45:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG6073-RB 1110 CG6073-PB 1..1110 17..1126 5505 99.7 Plus
CG6073-RA 1110 CG6073-PA 1..1110 17..1126 5505 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:45:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG6073-RB 1275 CG6073-RB 91..1201 17..1127 5510 99.7 Plus
CG6073-RA 1564 CG6073-RA 91..1201 17..1127 5510 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:45:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26187771..26188275 793..289 2495 99.6 Minus
3R 32079331 3R 26187381..26187717 1127..791 1670 99.7 Minus
3R 32079331 3R 26188332..26188521 289..100 950 100 Minus
3R 32079331 3R 26188632..26188717 102..17 430 100 Minus
Blast to na_te.dros performed on 2014-11-27 23:45:15 has no hits.

BS04378.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:57:17 Download gff for BS04378.complete
Subject Subject Range Query Range Percent Splice Strand
CG6073-RA 1..1110 17..1126 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:33:33 Download gff for BS04378.complete
Subject Subject Range Query Range Percent Splice Strand
CG6073-RA 88..1198 17..1127 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:37:05 Download gff for BS04378.complete
Subject Subject Range Query Range Percent Splice Strand
CG6073-RA 91..1199 17..1125 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:57:17 Download gff for BS04378.complete
Subject Subject Range Query Range Percent Splice Strand
CG6073-RA 88..1198 17..1127 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:07:28 Download gff for BS04378.complete
Subject Subject Range Query Range Percent Splice Strand
CG6073-RA 91..1199 17..1125 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:07:28 Download gff for BS04378.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26187383..26187714 794..1125 99 <- Minus
3R 26187771..26188274 290..793 99 <- Minus
3R 26188332..26188519 102..289 100 <- Minus
3R 26188633..26188717 17..101 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:37:05 Download gff for BS04378.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22013105..22013436 794..1125 99 <- Minus
arm_3R 22013493..22013996 290..793 99 <- Minus
arm_3R 22014054..22014241 102..289 100 <- Minus
arm_3R 22014355..22014439 17..101 100   Minus

BS04378.pep Sequence

Translation from 16 to 1125

> BS04378.pep
METVKELVQFMQPNQRLDLKAVALTHVLGLTGSSEGKSAILSLDEMLMAI
FGLTFDANQTVAKDAVLSLINLTSEEEAAIKVFQLAKQLQPPFAIVEVAA
KEITNEQSDLADPWSMVLSNLTRVESLVHEILDTLERDDHTLPRLAKAFA
QLDYNKKKAKLHYLAPIFCNLTQVSRGRELCCHRKYELLEKLLPFASFEG
SVVRRGGTIGILKNVCFDTVYHDVILNEQSSILVAILQPLCGPEEFSDED
NELLPIELQYLPESKTREEDPDLRKMLLECLLQLCSTRRSREILRSRGVY
EILREYHKWEAKVGKDSDCLLACENVVDILIKKEEEIGLDNYKTEVEVPA
EQSEKFVQEDAAYVKSLLD*

BS04378.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG6073-PB 369 CG6073-PB 1..369 1..369 1867 100 Plus
CG6073-PA 369 CG6073-PA 1..369 1..369 1867 100 Plus