Clone Sequence Records
BS04378.3prime Sequence
868 bp (763 high quality bases) assembled on 2005-12-01
> BS04378.3prime
ATGGTCTAGAAAGCTTTCAATCAAGCAAACTCTTCACATAGGCGGCGTCC
TCCTGGACGAATTTTTCTGACTGCTCTGCAGGCACTTCCACTTCGGTTTT
ATAGTTGTCCAGGCCAATCTCTTCCTCTTTCTTGATCAGAATGTCCACCA
CGTTCTCGCAGGCCAGCAGACAGTCGCTGTCCTTGCCCACCTTGGCCTCC
CACTTGTGGTACTCCCGCAGGATCTCATAGACGCCCCTGGAGCGCAGGAT
TTCCCGGCTGCGACGTGTGGAGCACAGTTGCAGCAAACACTCCAGCAGCA
TTTTCCGCAAATCGGGATCCTCTTCGCGCGTTTTACTTTCAGGCAGGTAC
TGCAGTTCGATGGGCAACAATTCATTGTCCTCGTCGCTGAACTCTTCTGG
ACCGCACAGTGGCTGCAGGATTGCCACCAGAATACTGCTCTGCTCGTTTA
GGATCACATCGTGGTAGACAGTGTCGAAGCAAACGTTCTTCAGAATGCCA
ATGGTGCCGCCACGCCGCACTACACTTCCCTCGAATGAGGCAAAGGGCAG
TAGTTTCTCCAGCAACTCGTATTTCCGATGGCAGCACAGTTCCCTGCCCC
GAGAAACCTGGGTCAGATTGCAGAAGATGGGCGCCAGATAATGCAGCTTG
GCCTTCTTTTTGTTGTAGTCCAATTGCGCGAAGGCCTTTGCCAAGCGGGG
TAGCGTGTGATCGTCTCTTTCTAGCGTGTCCAGGATCTCGTGGACCAGAG
ATTCCACTCGCGTTAGGTTGCTCAAGACCATGCTCCAGGGATCAGCCAGA
TCGGATTGCTCGTTGGTTATTTCCTTGGCAGCCACTTCTACGATGGCAAA
TGGCGGTTGCAATTGTTT
BS04378.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:46:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6073-PA | 1110 | CG6073-RA | 259..1110 | 868..17 | 4185 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:26:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6073-RB | 1275 | CG6073-RB | 349..1201 | 868..16 | 4220 | 99.6 | Minus |
CG6073-RA | 1564 | CG6073-RA | 349..1201 | 868..16 | 4220 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:26:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26187771..26188275 | 350..854 | 2495 | 99.6 | Plus |
3R | 32079331 | 3R | 26187381..26187717 | 16..352 | 1670 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-10 19:26:22 has no hits.
BS04378.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:46:51 Download gff for
BS04378.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6073-PA | 259..1110 | 17..868 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:07:48 Download gff for
BS04378.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6073-PA | 259..1110 | 17..868 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:20:40 Download gff for
BS04378.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6073-RA | 349..1201 | 16..868 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:39:20 Download gff for
BS04378.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6073-RA | 349..1201 | 16..868 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:39:20 Download gff for
BS04378.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26187381..26187714 | 16..349 | 99 | <- | Plus |
3R | 26187771..26188274 | 350..853 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:20:40 Download gff for
BS04378.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22013103..22013436 | 16..349 | 99 | <- | Plus |
arm_3R | 22013493..22013996 | 350..853 | 99 | <- | Plus |
BS04378.5prime Sequence
744 bp (717 high quality bases) assembled on 2005-11-29
> BS04378.5prime
GAAGTTATCAGTCGACATGGAGACTGTGAAGGAACTGGTTCAATTCATGC
AACCGAATCAGCGGCTGGACTTAAAGGCAGTAGCCCTAACACATGTTTTA
GGATTGACTGGCAGCTCAGAGGGCAAATCAGCAATACTTTCACTAGATGA
AATGCTAATGGCCATTTTTGGACTGACATTCGATGCAAATCAAACGGTGG
CCAAGGATGCGGTTTTAAGCCTAATAAATTTAACGTCCGAAGAGGAAGCA
GCAATTAAAGTTTTCCAACTGGCGAAACAATTGCAACCGCCATTTGCCAT
CGTAGAAGTGGCTGCCAAGGAAATAACCAACGAGCAATCCGATCTGGCTG
ATCCCTGGAGCATGGTCTTGAGCAACCTAACGCGAGTGGAATCTCTGGTC
CACGAGATCCTGGACACGCTAGAAAGAGACGATCACACGCTACCCCGCTT
GGCAAAGGCCTTCGCGCAATTGGACTACAACAAAAAGAAGGCCAAGCTGC
ATTATCTGGCGCCCATCTTCTGCAATCTGACCCAGGTTTCTCGGGGCAGG
GAACTGTGCTGCCATCGGAAATACGAGTTGCTGGAGAAACTACTGCCCTT
TGCCTCATTCGAGGGAAGTGTAGTGCGGCGTGGCGGCACCATTGGCATTC
TGAAGAACGTTTGCTTCGACACTGTCTACCACGATGTGATCCTAAACGAG
CAGAGCAGTATTCTGGTGGCAATCCTGCAGCCACTGTGCGGTCC
BS04378.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:46:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6073-PA | 1110 | CG6073-RA | 1..728 | 17..744 | 3590 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:43:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6073-RB | 1275 | CG6073-RB | 91..818 | 17..744 | 3610 | 99.7 | Plus |
CG6073-RA | 1564 | CG6073-RA | 91..818 | 17..744 | 3610 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:43:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26187820..26188275 | 744..289 | 2250 | 99.6 | Minus |
3R | 32079331 | 3R | 26188332..26188521 | 289..100 | 950 | 100 | Minus |
3R | 32079331 | 3R | 26188632..26188717 | 102..17 | 430 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:43:45 has no hits.
BS04378.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:46:52 Download gff for
BS04378.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6073-PA | 1..728 | 17..744 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:07:50 Download gff for
BS04378.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6073-PA | 1..728 | 17..744 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 11:00:44 Download gff for
BS04378.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6073-RA | 91..818 | 17..744 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:16:53 Download gff for
BS04378.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6073-RA | 91..818 | 17..744 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:16:53 Download gff for
BS04378.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26187820..26188274 | 290..744 | 99 | <- | Minus |
3R | 26188332..26188519 | 102..289 | 100 | <- | Minus |
3R | 26188633..26188717 | 17..101 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 11:00:44 Download gff for
BS04378.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22013542..22013996 | 290..744 | 99 | <- | Minus |
arm_3R | 22014054..22014241 | 102..289 | 100 | <- | Minus |
arm_3R | 22014355..22014439 | 17..101 | 100 | | Minus |
BS04378.complete Sequence
1142 bp (1142 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ638776
> BS04378.complete
GAAGTTATCAGTCGACATGGAGACTGTGAAGGAACTGGTTCAATTCATGC
AACCGAATCAGCGGCTGGACTTAAAGGCAGTAGCCCTAACACATGTTTTA
GGATTGACTGGCAGCTCAGAGGGCAAATCAGCAATACTTTCACTAGATGA
AATGCTAATGGCCATTTTTGGACTGACATTCGATGCAAATCAAACGGTGG
CCAAGGATGCGGTTTTAAGCCTAATAAATTTAACGTCCGAAGAGGAAGCA
GCAATTAAAGTTTTCCAACTGGCGAAACAATTGCAACCGCCATTTGCCAT
CGTAGAAGTGGCTGCCAAGGAAATAACCAACGAGCAATCCGATCTGGCTG
ATCCCTGGAGCATGGTCTTGAGCAACCTAACGCGAGTGGAATCTCTGGTC
CACGAGATCCTGGACACGCTAGAAAGAGACGATCACACGCTACCCCGCTT
GGCAAAGGCCTTCGCGCAATTGGACTACAACAAAAAGAAGGCCAAGCTGC
ATTATCTGGCGCCCATCTTCTGCAATCTGACCCAGGTTTCTCGGGGCAGG
GAACTGTGCTGCCATCGGAAATACGAGTTGCTGGAGAAACTACTGCCCTT
TGCCTCATTCGAGGGAAGTGTAGTGCGGCGTGGCGGCACCATTGGCATTC
TGAAGAACGTTTGCTTCGACACTGTCTACCACGATGTGATCCTAAACGAG
CAGAGCAGTATTCTGGTGGCAATCCTGCAGCCACTGTGCGGTCCAGAAGA
GTTCAGCGACGAGGACAATGAATTGTTGCCCATCGAACTGCAGTACCTGC
CTGAAAGTAAAACGCGCGAAGAGGATCCCGATTTGCGGAAAATGCTGCTG
GAGTGTTTGCTGCAACTGTGCTCCACACGTCGCAGCCGGGAAATCCTGCG
CTCCAGGGGCGTCTATGAGATCCTGCGGGAGTACCACAAGTGGGAGGCCA
AGGTGGGCAAGGACAGCGACTGTCTGCTGGCCTGCGAGAACGTGGTGGAC
ATTCTGATCAAGAAAGAGGAAGAGATTGGCCTGGACAACTATAAAACCGA
AGTGGAAGTGCCTGCAGAGCAGTCAGAAAAATTCGTCCAGGAGGACGCCG
CCTATGTGAAGAGTTTGCTTGATTGAAAGCTTTCTAGACCAT
BS04378.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:45:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6073-RB | 1110 | CG6073-PB | 1..1110 | 17..1126 | 5505 | 99.7 | Plus |
CG6073-RA | 1110 | CG6073-PA | 1..1110 | 17..1126 | 5505 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:45:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6073-RB | 1275 | CG6073-RB | 91..1201 | 17..1127 | 5510 | 99.7 | Plus |
CG6073-RA | 1564 | CG6073-RA | 91..1201 | 17..1127 | 5510 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:45:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26187771..26188275 | 793..289 | 2495 | 99.6 | Minus |
3R | 32079331 | 3R | 26187381..26187717 | 1127..791 | 1670 | 99.7 | Minus |
3R | 32079331 | 3R | 26188332..26188521 | 289..100 | 950 | 100 | Minus |
3R | 32079331 | 3R | 26188632..26188717 | 102..17 | 430 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:45:15 has no hits.
BS04378.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:57:17 Download gff for
BS04378.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6073-RA | 1..1110 | 17..1126 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:33:33 Download gff for
BS04378.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6073-RA | 88..1198 | 17..1127 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:37:05 Download gff for
BS04378.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6073-RA | 91..1199 | 17..1125 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:57:17 Download gff for
BS04378.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6073-RA | 88..1198 | 17..1127 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:07:28 Download gff for
BS04378.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6073-RA | 91..1199 | 17..1125 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:07:28 Download gff for
BS04378.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26187383..26187714 | 794..1125 | 99 | <- | Minus |
3R | 26187771..26188274 | 290..793 | 99 | <- | Minus |
3R | 26188332..26188519 | 102..289 | 100 | <- | Minus |
3R | 26188633..26188717 | 17..101 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:37:05 Download gff for
BS04378.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22013105..22013436 | 794..1125 | 99 | <- | Minus |
arm_3R | 22013493..22013996 | 290..793 | 99 | <- | Minus |
arm_3R | 22014054..22014241 | 102..289 | 100 | <- | Minus |
arm_3R | 22014355..22014439 | 17..101 | 100 | | Minus |
BS04378.pep Sequence
Translation from 16 to 1125
> BS04378.pep
METVKELVQFMQPNQRLDLKAVALTHVLGLTGSSEGKSAILSLDEMLMAI
FGLTFDANQTVAKDAVLSLINLTSEEEAAIKVFQLAKQLQPPFAIVEVAA
KEITNEQSDLADPWSMVLSNLTRVESLVHEILDTLERDDHTLPRLAKAFA
QLDYNKKKAKLHYLAPIFCNLTQVSRGRELCCHRKYELLEKLLPFASFEG
SVVRRGGTIGILKNVCFDTVYHDVILNEQSSILVAILQPLCGPEEFSDED
NELLPIELQYLPESKTREEDPDLRKMLLECLLQLCSTRRSREILRSRGVY
EILREYHKWEAKVGKDSDCLLACENVVDILIKKEEEIGLDNYKTEVEVPA
EQSEKFVQEDAAYVKSLLD*
BS04378.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6073-PB | 369 | CG6073-PB | 1..369 | 1..369 | 1867 | 100 | Plus |
CG6073-PA | 369 | CG6073-PA | 1..369 | 1..369 | 1867 | 100 | Plus |