Clone Sequence Records
BS04384.3prime Sequence
510 bp (509 high quality bases) assembled on 2005-12-01
> BS04384.3prime
ATGGTCTAGAAAGCTTCTACTCGGTGGCCGCCATGGCGCGGGCCTGGGCA
CGCACGCGCTTCTCGTACTCCAGTCGGTTCTGGCAGTAGATGGTGTAGGC
CTCCGCCTGGGCCGGGTCCTTGATGTTCGGCTCGTTGAGCAGGTCCTGGA
TGCCCAGCAGGATTTGCTTGATGGTGATGGCGGGGCGCCAGTCCTTCTCC
TCGTCCAGCAGCGACAGGCAAACGGTGCCCGAGGGATAGACGTTCGGGTG
GAACAGCGGCGGTTCGAACTTGCACTTGGGCGGCGAGGTGGGGTAGTCGT
CCTTGAAGATCATGCGCAGCTTGTAGAGCCCGCCCTCCCAGGGGGTGGAC
TTCTTGCCGGGAATGGCGCACTCCCAGATCATCAGGTTGAGGGTGCCGTC
AGGGTTCTTGGCGGGTCGTGCGACGAACCCGAATGGGTGATCCTTGCGCC
AGGCCTTGCGCTCCTCCCCCAATCGTGTAATAGCAATGCCGGACATGTCG
ACTGATAACT
BS04384.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:47:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3018-PA | 480 | lwr-RA | 1..480 | 496..17 | 2325 | 99.3 | Minus |
| CG3018-PB | 480 | lwr-RB | 1..480 | 496..17 | 2325 | 99.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:25:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lwr-RD | 1105 | CG3018-RD | 250..730 | 497..17 | 2360 | 99.4 | Minus |
| lwr-RC | 1363 | CG3018-RC | 254..734 | 497..17 | 2360 | 99.4 | Minus |
| lwr-RB | 1294 | CG3018-RB | 283..763 | 497..17 | 2360 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:25:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 541768..542248 | 17..497 | 2360 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-13 09:25:17 has no hits.
BS04384.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:47:05 Download gff for
BS04384.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lwr-PA | 1..480 | 17..496 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:08:05 Download gff for
BS04384.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3018-PB | 1..480 | 17..496 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 15:54:05 Download gff for
BS04384.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lwr-RB | 279..763 | 17..500 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:08:50 Download gff for
BS04384.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lwr-RB | 279..763 | 17..500 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:08:50 Download gff for
BS04384.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 541768..542252 | 17..500 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 15:54:05 Download gff for
BS04384.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 541768..542252 | 17..500 | 99 | | Plus |
BS04384.5prime Sequence
510 bp (509 high quality bases) assembled on 2005-11-29
> BS04384.5prime
GAAGTTATCAGTCGACATGTCCGGCATTGCTATTACACGATTGGGGGAGG
AGCGCAAGGCCTGGCGCAAGGATCACCCATTCGGGTTCGTCGCACGACCC
GCCAAGAACCCTGACGGCACCCTCAACCTGATGATCTGGGAGTGCGCCAT
TCCCGGCAAGAAGTCCACCCCCTGGGAGGGCGGGCTCTACAAGCTGCGCA
TGATCTTCAAGGACGACTACCCCACCTCGCCGCCCAAGTGCAAGTTCGAA
CCGCCGCTGTTCCACCCGAACGTCTATCCCTCGGGCACCGTTTGCCTGTC
GCTGCTGGACGAGGAGAAGGACTGGCGCCCCGCCATCACCATCAAGCAAA
TCCTGCTGGGCATCCAGGACCTGCTCAACGAGCCGAACATCAAGGACCCG
GCCCAGGCGGAGGCCTACACCATCTACTGCCAGAACCGACTGGAGTACGA
GAAGCGCGTGCGTGCCCAGGCCCGCGCCATGGCGGCCACCGAGTAGAAGC
TTTCTAGACC
BS04384.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:47:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3018-PA | 480 | lwr-RA | 1..480 | 17..496 | 2325 | 99.3 | Plus |
| CG3018-PB | 480 | lwr-RB | 1..480 | 17..496 | 2325 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:15:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lwr-RD | 1105 | CG3018-RD | 250..730 | 16..496 | 2360 | 99.4 | Plus |
| lwr-RC | 1363 | CG3018-RC | 254..734 | 16..496 | 2360 | 99.4 | Plus |
| lwr-RB | 1294 | CG3018-RB | 283..763 | 16..496 | 2360 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:15:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 541768..542248 | 496..16 | 2360 | 99.4 | Minus |
Blast to na_te.dros performed on 2015-02-02 12:15:42 has no hits.
BS04384.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:47:06 Download gff for
BS04384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lwr-PA | 1..480 | 17..496 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:08:06 Download gff for
BS04384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3018-PB | 1..480 | 17..496 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 13:57:47 Download gff for
BS04384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lwr-RB | 279..763 | 13..496 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:39:10 Download gff for
BS04384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lwr-RB | 279..763 | 13..496 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:39:10 Download gff for
BS04384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 541768..542252 | 13..496 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 13:57:47 Download gff for
BS04384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 541768..542252 | 13..496 | 99 | | Minus |
BS04384.complete Sequence
512 bp (512 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634927
> BS04384.complete
GAAGTTATCAGTCGACATGTCCGGCATTGCTATTACACGATTGGGGGAGG
AGCGCAAGGCCTGGCGCAAGGATCACCCATTCGGGTTCGTCGCACGACCC
GCCAAGAACCCTGACGGCACCCTCAACCTGATGATCTGGGAGTGCGCCAT
TCCCGGCAAGAAGTCCACCCCCTGGGAGGGCGGGCTCTACAAGCTGCGCA
TGATCTTCAAGGACGACTACCCCACCTCGCCGCCCAAGTGCAAGTTCGAA
CCGCCGCTGTTCCACCCGAACGTCTATCCCTCGGGCACCGTTTGCCTGTC
GCTGCTGGACGAGGAGAAGGACTGGCGCCCCGCCATCACCATCAAGCAAA
TCCTGCTGGGCATCCAGGACCTGCTCAACGAGCCGAACATCAAGGACCCG
GCCCAGGCGGAGGCCTACACCATCTACTGCCAGAACCGACTGGAGTACGA
GAAGCGCGTGCGTGCCCAGGCCCGCGCCATGGCGGCCACCGAGTAGAAGC
TTTCTAGACCAT
BS04384.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:55:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lwr-RD | 480 | CG3018-PD | 1..480 | 17..496 | 2355 | 99.4 | Plus |
| lwr-RC | 480 | CG3018-PC | 1..480 | 17..496 | 2355 | 99.4 | Plus |
| lwr-RB | 480 | CG3018-PB | 1..480 | 17..496 | 2355 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:55:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lwr-RD | 1105 | CG3018-RD | 250..730 | 16..496 | 2360 | 99.4 | Plus |
| lwr-RC | 1363 | CG3018-RC | 254..734 | 16..496 | 2360 | 99.4 | Plus |
| lwr-RB | 1294 | CG3018-RB | 283..763 | 16..496 | 2360 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:55:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 541768..542248 | 496..16 | 2360 | 99.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:55:54 has no hits.
BS04384.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:31:20 Download gff for
BS04384.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lwr-RB | 1..480 | 17..496 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:58:10 Download gff for
BS04384.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lwr-RB | 271..755 | 13..496 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:02 Download gff for
BS04384.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lwr-RB | 284..763 | 17..496 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:31:20 Download gff for
BS04384.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lwr-RB | 271..755 | 13..496 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:56:05 Download gff for
BS04384.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lwr-RB | 284..763 | 17..496 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:56:05 Download gff for
BS04384.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 541768..542247 | 17..496 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:02 Download gff for
BS04384.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 541768..542247 | 17..496 | 99 | | Minus |
BS04384.pep Sequence
Translation from 16 to 495
> BS04384.pep
MSGIAITRLGEERKAWRKDHPFGFVARPAKNPDGTLNLMIWECAIPGKKS
TPWEGGLYKLRMIFKDDYPTSPPKCKFEPPLFHPNVYPSGTVCLSLLDEE
KDWRPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIYCQNRLEYEKRVRA
QARAMAATE*
BS04384.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:43:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lwr-PD | 159 | CG3018-PD | 1..159 | 1..159 | 863 | 100 | Plus |
| lwr-PC | 159 | CG3018-PC | 1..159 | 1..159 | 863 | 100 | Plus |
| lwr-PB | 159 | CG3018-PB | 1..159 | 1..159 | 863 | 100 | Plus |
| lwr-PA | 159 | CG3018-PA | 1..159 | 1..159 | 863 | 100 | Plus |
| Ubc6-PC | 151 | CG2013-PC | 1..143 | 1..150 | 293 | 41.3 | Plus |
