Clone BS04385 Report

Search the DGRC for BS04385

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:43
Well:85
Vector:pDNR-Dual
Associated Gene/TranscriptCG8635-RA
Protein status:BS04385.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04385.3prime Sequence

782 bp (780 high quality bases) assembled on 2005-12-01

> BS04385.3prime
ATGGTCTAGAAAGCTTCTAGTCATCGTCCTCATCGTCCAGATCTAGGTCA
TCCAGTTCGCCGGCCAGATCAACAAAGAGATCCTTGTTGATGGGGGCAGC
ATCGTTGGCGGGTGCAGACGACGATGGGCCATCCTCGTCGGCCGCTGCGT
CCTCGGCTGCGGCGGTTTTGGCTGCTTCGGTTGCCTGGTCCAGTAGTCGA
TTGGTGGAGGCAATGGTGCCCGAGCCGTCCACCTCCTTGGCGGCCAGCGA
CAGGGCAGCCAGATCCAGTTCCTTGAACTCGACGGCATTATCGTCGTCGT
CCTCCCTGTTGTAGACGTCGAAAGCAGCGTCGCCCTCCTCCATGGGTCCG
TCGTCGACCAGATCCGGATTGAAGCTGAACATTTCGCGACCAGAGATGCC
GAACTGTTTGCCCTTGCTGAAGTCACTCTTCTTGCGCTCTTCCTCGGCAG
CCAGCTTGGCCTTCTTCTCGGCAATCTTGCGCTTCTTCCAGGCGAGGAAG
GACTCGAGGGTGACGCGTGTCTGGTTGGGACCGAGGGCAGCGCGCTCCTT
CTCAATTAAATCGACCAGCGAGATTTCCGTGGGCTTTTCCTCCTTCTTCT
TATCGCGCTTCAGCACATATCCAGCTGGCAAGGCGTGACGGTAGATGCAC
TTTCCGCCGTTGGGGCACTCCCAGAACCAGCCGTACTTTGATTTTTCCAC
AGCTTCCAGGAAGAATTTGCAAATAATATCCGTGGTGGGACGTTGCTTTT
CGCCGGAGCTCTTCTTCTCGACCACCTCCTTC

BS04385.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:47:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG8635-PA 1215 CG8635-RA 450..1215 782..17 3830 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:48:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG8635-RB 1447 CG8635-RB 583..1348 782..17 3830 100 Minus
CG8635-RA 1572 CG8635-RA 708..1473 782..17 3830 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:48:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8630306..8631013 17..724 3540 100 Plus
2R 25286936 2R 8631072..8631129 725..782 290 100 Plus
Blast to na_te.dros performed on 2015-02-12 13:48:18 has no hits.

BS04385.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:47:07 Download gff for BS04385.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8635-PA 450..1215 17..782 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:08:08 Download gff for BS04385.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8635-PA 450..1215 17..782 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 12:36:58 Download gff for BS04385.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8635-RA 708..1477 12..782 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:10:45 Download gff for BS04385.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8635-RA 708..1477 12..782 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:10:45 Download gff for BS04385.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 8630302..8631013 12..724 99 <- Plus
2R 8631072..8631129 725..782 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 12:36:58 Download gff for BS04385.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4518577..4518634 725..782 100   Plus
arm_2R 4517807..4518518 12..724 99 <- Plus

BS04385.5prime Sequence

805 bp (760 high quality bases) assembled on 2005-12-01

> BS04385.5prime
GAAGTTATCAGTCGACATGCCACCCAAAAAGGCGCCACCAGGTCCCAGCA
AGAAGACGGAGCAGAAAAAGAAGGAGAAAGTCATTGAGGACAAAACCTTC
GGGCTGAAGAACAAGAAGGGCAACAAGCAGCAGAAGTTCATCCAGCAGGT
GCAGAAGCAGGTCCAGTCCGGCGGACAGCATCCTCGCCAGGATGGCGACA
AGCGCAAGGAGGAGAAGGAGAAGAAGCTGGCCGAACAGCGCGAGATGGCG
CTGATCTTCAAGCCGGTACAGACTCAGAAGGTGGAGAAGGGCACCGATCC
CAAGTCGGTGGTCTGCGCCTTCTTCAAACAGGGCACCTGCACCAAGGGCG
ACAAGTGCAAGTTCTCCCACGATCTTTCCCAGGAGAACAAGGTCGAAAAG
CGGTCCATTTATGTGGACATGCGCGACGAGGACGATCCGATGACCAACTG
GGACGATGCCAAGCTGAAGGAGGTGGTCGAGAAGAAGAGCTCCGGCGAAA
AGCAACGTCCCACCACGGATATTATTTGCAAATTCTTCCTGGAAGCTGTG
GAAAAATCAAAGTACGGCTGGTTCTGGGAGTGCCCCAACGGCGGAAAGTG
CATCTACCGTCACGCCTTGCCAGCTGGATATGTGCTGAAGCGCGATAAGA
AGAAGGAGGAAAAGCCCACGGAAATCTCGCTGGTCGATTTAATTGAGAAG
GAGCGCGCTGCCCTCGGTCCCAACCAGACACGCGTCACCCTCGAGTCCTT
CCTCGCCTGGAAGAAGCGCAAGATTGCCGAGAAGAAGGCCAAGCTGGCTG
CCGAG

BS04385.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:47:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG8635-PA 1215 CG8635-RA 1..789 17..805 3945 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:31:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG8635-RB 1447 CG8635-RB 134..922 17..805 3945 100 Plus
CG8635-RA 1572 CG8635-RA 259..1047 17..805 3945 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:31:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8631072..8631508 523..87 2185 100 Minus
2R 25286936 2R 8630732..8631013 805..524 1410 100 Minus
2R 25286936 2R 8631632..8631704 89..17 365 100 Minus
Blast to na_te.dros performed on 2015-02-12 01:31:54 has no hits.

BS04385.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:47:08 Download gff for BS04385.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8635-PA 1..789 17..805 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:08:09 Download gff for BS04385.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8635-PA 1..789 17..805 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:01:25 Download gff for BS04385.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8635-RA 259..1047 17..805 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:24:36 Download gff for BS04385.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8635-RA 259..1047 17..805 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:24:36 Download gff for BS04385.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 8631633..8631704 17..88 100   Minus
2R 8630732..8631013 524..805 100 <- Minus
2R 8631072..8631506 89..523 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:01:25 Download gff for BS04385.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4518237..4518518 524..805 100 <- Minus
arm_2R 4518577..4519011 89..523 100 <- Minus
arm_2R 4519138..4519209 17..88 100   Minus

BS04385.complete Sequence

1247 bp (1247 high quality bases) assembled on 2006-02-02

GenBank Submission: FJ634928

> BS04385.complete
GAAGTTATCAGTCGACATGCCACCCAAAAAGGCGCCACCAGGTCCCAGCA
AGAAGACGGAGCAGAAAAAGAAGGAGAAAGTCATTGAGGACAAAACCTTC
GGGCTGAAGAACAAGAAGGGCAACAAGCAGCAGAAGTTCATCCAGCAGGT
GCAGAAGCAGGTCCAGTCCGGCGGACAGCATCCTCGCCAGGATGGCGACA
AGCGCAAGGAGGAGAAGGAGAAGAAGCTGGCCGAACAGCGCGAGATGGCG
CTGATCTTCAAGCCGGTACAGACTCAGAAGGTGGAGAAGGGCACCGATCC
CAAGTCGGTGGTCTGCGCCTTCTTCAAACAGGGCACCTGCACCAAGGGCG
ACAAGTGCAAGTTCTCCCACGATCTTTCCCAGGAGAACAAGGTCGAAAAG
CGGTCCATTTATGTGGACATGCGCGACGAGGACGATCCGATGACCAACTG
GGACGATGCCAAGCTGAAGGAGGTGGTCGAGAAGAAGAGCTCCGGCGAAA
AGCAACGTCCCACCACGGATATTATTTGCAAATTCTTCCTGGAAGCTGTG
GAAAAATCAAAGTACGGCTGGTTCTGGGAGTGCCCCAACGGCGGAAAGTG
CATCTACCGTCACGCCTTGCCAGCTGGATATGTGCTGAAGCGCGATAAGA
AGAAGGAGGAAAAGCCCACGGAAATCTCGCTGGTCGATTTAATTGAGAAG
GAGCGCGCTGCCCTCGGTCCCAACCAGACACGCGTCACCCTCGAGTCCTT
CCTCGCCTGGAAGAAGCGCAAGATTGCCGAGAAGAAGGCCAAGCTGGCTG
CCGAGGAAGAGCGCAAGAAGAGTGACTTCAGCAAGGGCAAACAGTTCGGC
ATCTCTGGTCGCGAAATGTTCAGCTTCAATCCGGATCTGGTCGACGACGG
ACCCATGGAGGAGGGCGACGCTGCTTTCGACGTCTACAACAGGGAGGACG
ACGACGATAATGCCGTCGAGTTCAAGGAACTGGATCTGGCTGCCCTGTCG
CTGGCCGCCAAGGAGGTGGACGGCTCGGGCACCATTGCCTCCACCAATCG
ACTACTGGACCAGGCAACCGAAGCAGCCAAAACCGCCGCAGCCGAGGACG
CAGCGGCCGACGAGGATGGCCCATCGTCGTCTGCACCCGCCAACGATGCT
GCCCCCATCAACAAGGATCTCTTTGTTGATCTGGCCGGCGAACTGGATGA
CCTAGATCTGGACGATGAGGACGATGACTAGAAGCTTTCTAGACCAT

BS04385.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:44:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG8635-RB 1215 CG8635-PB 1..1215 17..1231 6075 100 Plus
CG8635-RA 1215 CG8635-PA 1..1215 17..1231 6075 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:44:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG8635-RB 1447 CG8635-RB 134..1348 17..1231 6075 100 Plus
CG8635-RA 1572 CG8635-RA 259..1473 17..1231 6075 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:44:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8630306..8631013 1231..524 3540 100 Minus
2R 25286936 2R 8631072..8631508 523..87 2185 100 Minus
2R 25286936 2R 8631632..8631704 89..17 365 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:44:09 has no hits.

BS04385.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:57:19 Download gff for BS04385.complete
Subject Subject Range Query Range Percent Splice Strand
CG8635-RA 1..1215 17..1231 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:33:35 Download gff for BS04385.complete
Subject Subject Range Query Range Percent Splice Strand
CG8635-RA 259..1477 17..1236 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:13:27 Download gff for BS04385.complete
Subject Subject Range Query Range Percent Splice Strand
CG8635-RA 259..1473 17..1231 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:57:19 Download gff for BS04385.complete
Subject Subject Range Query Range Percent Splice Strand
CG8635-RA 259..1477 17..1236 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:27:11 Download gff for BS04385.complete
Subject Subject Range Query Range Percent Splice Strand
CG8635-RA 259..1473 17..1231 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:27:11 Download gff for BS04385.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8630306..8631013 524..1231 100 <- Minus
2R 8631072..8631506 89..523 100 <- Minus
2R 8631633..8631704 17..88 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:13:27 Download gff for BS04385.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4517811..4518518 524..1231 100 <- Minus
arm_2R 4518577..4519011 89..523 100 <- Minus
arm_2R 4519138..4519209 17..88 100   Minus

BS04385.pep Sequence

Translation from 16 to 1230

> BS04385.pep
MPPKKAPPGPSKKTEQKKKEKVIEDKTFGLKNKKGNKQQKFIQQVQKQVQ
SGGQHPRQDGDKRKEEKEKKLAEQREMALIFKPVQTQKVEKGTDPKSVVC
AFFKQGTCTKGDKCKFSHDLSQENKVEKRSIYVDMRDEDDPMTNWDDAKL
KEVVEKKSSGEKQRPTTDIICKFFLEAVEKSKYGWFWECPNGGKCIYRHA
LPAGYVLKRDKKKEEKPTEISLVDLIEKERAALGPNQTRVTLESFLAWKK
RKIAEKKAKLAAEEERKKSDFSKGKQFGISGREMFSFNPDLVDDGPMEEG
DAAFDVYNREDDDDNAVEFKELDLAALSLAAKEVDGSGTIASTNRLLDQA
TEAAKTAAAEDAAADEDGPSSSAPANDAAPINKDLFVDLAGELDDLDLDD
EDDD*

BS04385.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG8635-PB 404 CG8635-PB 1..404 1..404 2103 100 Plus
CG8635-PA 404 CG8635-PA 1..404 1..404 2103 100 Plus