Clone Sequence Records
BS04385.3prime Sequence
782 bp (780 high quality bases) assembled on 2005-12-01
> BS04385.3prime
ATGGTCTAGAAAGCTTCTAGTCATCGTCCTCATCGTCCAGATCTAGGTCA
TCCAGTTCGCCGGCCAGATCAACAAAGAGATCCTTGTTGATGGGGGCAGC
ATCGTTGGCGGGTGCAGACGACGATGGGCCATCCTCGTCGGCCGCTGCGT
CCTCGGCTGCGGCGGTTTTGGCTGCTTCGGTTGCCTGGTCCAGTAGTCGA
TTGGTGGAGGCAATGGTGCCCGAGCCGTCCACCTCCTTGGCGGCCAGCGA
CAGGGCAGCCAGATCCAGTTCCTTGAACTCGACGGCATTATCGTCGTCGT
CCTCCCTGTTGTAGACGTCGAAAGCAGCGTCGCCCTCCTCCATGGGTCCG
TCGTCGACCAGATCCGGATTGAAGCTGAACATTTCGCGACCAGAGATGCC
GAACTGTTTGCCCTTGCTGAAGTCACTCTTCTTGCGCTCTTCCTCGGCAG
CCAGCTTGGCCTTCTTCTCGGCAATCTTGCGCTTCTTCCAGGCGAGGAAG
GACTCGAGGGTGACGCGTGTCTGGTTGGGACCGAGGGCAGCGCGCTCCTT
CTCAATTAAATCGACCAGCGAGATTTCCGTGGGCTTTTCCTCCTTCTTCT
TATCGCGCTTCAGCACATATCCAGCTGGCAAGGCGTGACGGTAGATGCAC
TTTCCGCCGTTGGGGCACTCCCAGAACCAGCCGTACTTTGATTTTTCCAC
AGCTTCCAGGAAGAATTTGCAAATAATATCCGTGGTGGGACGTTGCTTTT
CGCCGGAGCTCTTCTTCTCGACCACCTCCTTC
BS04385.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:47:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8635-PA | 1215 | CG8635-RA | 450..1215 | 782..17 | 3830 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:48:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8635-RB | 1447 | CG8635-RB | 583..1348 | 782..17 | 3830 | 100 | Minus |
CG8635-RA | 1572 | CG8635-RA | 708..1473 | 782..17 | 3830 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:48:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8630306..8631013 | 17..724 | 3540 | 100 | Plus |
2R | 25286936 | 2R | 8631072..8631129 | 725..782 | 290 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 13:48:18 has no hits.
BS04385.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:47:07 Download gff for
BS04385.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8635-PA | 450..1215 | 17..782 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:08:08 Download gff for
BS04385.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8635-PA | 450..1215 | 17..782 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 12:36:58 Download gff for
BS04385.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8635-RA | 708..1477 | 12..782 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:10:45 Download gff for
BS04385.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8635-RA | 708..1477 | 12..782 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:10:45 Download gff for
BS04385.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8630302..8631013 | 12..724 | 99 | <- | Plus |
2R | 8631072..8631129 | 725..782 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 12:36:58 Download gff for
BS04385.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4518577..4518634 | 725..782 | 100 | | Plus |
arm_2R | 4517807..4518518 | 12..724 | 99 | <- | Plus |
BS04385.5prime Sequence
805 bp (760 high quality bases) assembled on 2005-12-01
> BS04385.5prime
GAAGTTATCAGTCGACATGCCACCCAAAAAGGCGCCACCAGGTCCCAGCA
AGAAGACGGAGCAGAAAAAGAAGGAGAAAGTCATTGAGGACAAAACCTTC
GGGCTGAAGAACAAGAAGGGCAACAAGCAGCAGAAGTTCATCCAGCAGGT
GCAGAAGCAGGTCCAGTCCGGCGGACAGCATCCTCGCCAGGATGGCGACA
AGCGCAAGGAGGAGAAGGAGAAGAAGCTGGCCGAACAGCGCGAGATGGCG
CTGATCTTCAAGCCGGTACAGACTCAGAAGGTGGAGAAGGGCACCGATCC
CAAGTCGGTGGTCTGCGCCTTCTTCAAACAGGGCACCTGCACCAAGGGCG
ACAAGTGCAAGTTCTCCCACGATCTTTCCCAGGAGAACAAGGTCGAAAAG
CGGTCCATTTATGTGGACATGCGCGACGAGGACGATCCGATGACCAACTG
GGACGATGCCAAGCTGAAGGAGGTGGTCGAGAAGAAGAGCTCCGGCGAAA
AGCAACGTCCCACCACGGATATTATTTGCAAATTCTTCCTGGAAGCTGTG
GAAAAATCAAAGTACGGCTGGTTCTGGGAGTGCCCCAACGGCGGAAAGTG
CATCTACCGTCACGCCTTGCCAGCTGGATATGTGCTGAAGCGCGATAAGA
AGAAGGAGGAAAAGCCCACGGAAATCTCGCTGGTCGATTTAATTGAGAAG
GAGCGCGCTGCCCTCGGTCCCAACCAGACACGCGTCACCCTCGAGTCCTT
CCTCGCCTGGAAGAAGCGCAAGATTGCCGAGAAGAAGGCCAAGCTGGCTG
CCGAG
BS04385.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:47:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8635-PA | 1215 | CG8635-RA | 1..789 | 17..805 | 3945 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:31:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8635-RB | 1447 | CG8635-RB | 134..922 | 17..805 | 3945 | 100 | Plus |
CG8635-RA | 1572 | CG8635-RA | 259..1047 | 17..805 | 3945 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:31:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8631072..8631508 | 523..87 | 2185 | 100 | Minus |
2R | 25286936 | 2R | 8630732..8631013 | 805..524 | 1410 | 100 | Minus |
2R | 25286936 | 2R | 8631632..8631704 | 89..17 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:31:54 has no hits.
BS04385.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:47:08 Download gff for
BS04385.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8635-PA | 1..789 | 17..805 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:08:09 Download gff for
BS04385.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8635-PA | 1..789 | 17..805 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:01:25 Download gff for
BS04385.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8635-RA | 259..1047 | 17..805 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:24:36 Download gff for
BS04385.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8635-RA | 259..1047 | 17..805 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:24:36 Download gff for
BS04385.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8631633..8631704 | 17..88 | 100 | | Minus |
2R | 8630732..8631013 | 524..805 | 100 | <- | Minus |
2R | 8631072..8631506 | 89..523 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:01:25 Download gff for
BS04385.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4518237..4518518 | 524..805 | 100 | <- | Minus |
arm_2R | 4518577..4519011 | 89..523 | 100 | <- | Minus |
arm_2R | 4519138..4519209 | 17..88 | 100 | | Minus |
BS04385.complete Sequence
1247 bp (1247 high quality bases) assembled on 2006-02-02
GenBank Submission: FJ634928
> BS04385.complete
GAAGTTATCAGTCGACATGCCACCCAAAAAGGCGCCACCAGGTCCCAGCA
AGAAGACGGAGCAGAAAAAGAAGGAGAAAGTCATTGAGGACAAAACCTTC
GGGCTGAAGAACAAGAAGGGCAACAAGCAGCAGAAGTTCATCCAGCAGGT
GCAGAAGCAGGTCCAGTCCGGCGGACAGCATCCTCGCCAGGATGGCGACA
AGCGCAAGGAGGAGAAGGAGAAGAAGCTGGCCGAACAGCGCGAGATGGCG
CTGATCTTCAAGCCGGTACAGACTCAGAAGGTGGAGAAGGGCACCGATCC
CAAGTCGGTGGTCTGCGCCTTCTTCAAACAGGGCACCTGCACCAAGGGCG
ACAAGTGCAAGTTCTCCCACGATCTTTCCCAGGAGAACAAGGTCGAAAAG
CGGTCCATTTATGTGGACATGCGCGACGAGGACGATCCGATGACCAACTG
GGACGATGCCAAGCTGAAGGAGGTGGTCGAGAAGAAGAGCTCCGGCGAAA
AGCAACGTCCCACCACGGATATTATTTGCAAATTCTTCCTGGAAGCTGTG
GAAAAATCAAAGTACGGCTGGTTCTGGGAGTGCCCCAACGGCGGAAAGTG
CATCTACCGTCACGCCTTGCCAGCTGGATATGTGCTGAAGCGCGATAAGA
AGAAGGAGGAAAAGCCCACGGAAATCTCGCTGGTCGATTTAATTGAGAAG
GAGCGCGCTGCCCTCGGTCCCAACCAGACACGCGTCACCCTCGAGTCCTT
CCTCGCCTGGAAGAAGCGCAAGATTGCCGAGAAGAAGGCCAAGCTGGCTG
CCGAGGAAGAGCGCAAGAAGAGTGACTTCAGCAAGGGCAAACAGTTCGGC
ATCTCTGGTCGCGAAATGTTCAGCTTCAATCCGGATCTGGTCGACGACGG
ACCCATGGAGGAGGGCGACGCTGCTTTCGACGTCTACAACAGGGAGGACG
ACGACGATAATGCCGTCGAGTTCAAGGAACTGGATCTGGCTGCCCTGTCG
CTGGCCGCCAAGGAGGTGGACGGCTCGGGCACCATTGCCTCCACCAATCG
ACTACTGGACCAGGCAACCGAAGCAGCCAAAACCGCCGCAGCCGAGGACG
CAGCGGCCGACGAGGATGGCCCATCGTCGTCTGCACCCGCCAACGATGCT
GCCCCCATCAACAAGGATCTCTTTGTTGATCTGGCCGGCGAACTGGATGA
CCTAGATCTGGACGATGAGGACGATGACTAGAAGCTTTCTAGACCAT
BS04385.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:44:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8635-RB | 1215 | CG8635-PB | 1..1215 | 17..1231 | 6075 | 100 | Plus |
CG8635-RA | 1215 | CG8635-PA | 1..1215 | 17..1231 | 6075 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:44:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8635-RB | 1447 | CG8635-RB | 134..1348 | 17..1231 | 6075 | 100 | Plus |
CG8635-RA | 1572 | CG8635-RA | 259..1473 | 17..1231 | 6075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:44:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8630306..8631013 | 1231..524 | 3540 | 100 | Minus |
2R | 25286936 | 2R | 8631072..8631508 | 523..87 | 2185 | 100 | Minus |
2R | 25286936 | 2R | 8631632..8631704 | 89..17 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:44:09 has no hits.
BS04385.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:57:19 Download gff for
BS04385.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8635-RA | 1..1215 | 17..1231 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:33:35 Download gff for
BS04385.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8635-RA | 259..1477 | 17..1236 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:13:27 Download gff for
BS04385.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8635-RA | 259..1473 | 17..1231 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:57:19 Download gff for
BS04385.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8635-RA | 259..1477 | 17..1236 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:27:11 Download gff for
BS04385.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8635-RA | 259..1473 | 17..1231 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:27:11 Download gff for
BS04385.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8630306..8631013 | 524..1231 | 100 | <- | Minus |
2R | 8631072..8631506 | 89..523 | 100 | <- | Minus |
2R | 8631633..8631704 | 17..88 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:13:27 Download gff for
BS04385.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4517811..4518518 | 524..1231 | 100 | <- | Minus |
arm_2R | 4518577..4519011 | 89..523 | 100 | <- | Minus |
arm_2R | 4519138..4519209 | 17..88 | 100 | | Minus |
BS04385.pep Sequence
Translation from 16 to 1230
> BS04385.pep
MPPKKAPPGPSKKTEQKKKEKVIEDKTFGLKNKKGNKQQKFIQQVQKQVQ
SGGQHPRQDGDKRKEEKEKKLAEQREMALIFKPVQTQKVEKGTDPKSVVC
AFFKQGTCTKGDKCKFSHDLSQENKVEKRSIYVDMRDEDDPMTNWDDAKL
KEVVEKKSSGEKQRPTTDIICKFFLEAVEKSKYGWFWECPNGGKCIYRHA
LPAGYVLKRDKKKEEKPTEISLVDLIEKERAALGPNQTRVTLESFLAWKK
RKIAEKKAKLAAEEERKKSDFSKGKQFGISGREMFSFNPDLVDDGPMEEG
DAAFDVYNREDDDDNAVEFKELDLAALSLAAKEVDGSGTIASTNRLLDQA
TEAAKTAAAEDAAADEDGPSSSAPANDAAPINKDLFVDLAGELDDLDLDD
EDDD*
BS04385.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8635-PB | 404 | CG8635-PB | 1..404 | 1..404 | 2103 | 100 | Plus |
CG8635-PA | 404 | CG8635-PA | 1..404 | 1..404 | 2103 | 100 | Plus |