Clone Sequence Records
BS04402.3prime Sequence
919 bp (850 high quality bases) assembled on 2005-12-01
> BS04402.3prime
ATGGTCTAGAAAGCTTTTAGTTGTTGTCCTGCTTGTTGATCAGCTTAAGG
ATCACCTTGCCGGCCTGCACCTCCAGCGCGTAGAGGCTGCCGTCCTTGAT
CTCGTTGTTCAGCACCTCGTCGGTGATGGTCACAAGGATGCCCGATGGCC
CCGATATGTACACGCAGCTCTTGTTGGCGTCGTTGAAGATATTGGAGCCG
CTGCCCGAATACTTGGAGTGCATCCCCCAATTGTTGAAGAGTGCTGCAGC
AGCTGCAGTGGCTGCTCCACCGGCTCCGTTCTCCTGGGCACTGGCCTTGG
CCATGAACTCGTAGAAGCCGGGCATCTTGAAAAGCTTCTGCTGCAGCTCC
TTGGCCGTGTTCGACAACAAGTAGATGGCATTGTAGCTGCATCCATCCAC
GCTGGCGTACAACGTTAGCCTGGGAGCAATAGTTTTGGCGCGCAAAATGT
TGAACATGCGAATGCCATCGGCCAGGCCGCAAATTTGAATCAAATCCTCC
TTGGACATGCGCATGATATCCGCTCCCGAGAACTGTGCAAACGTTGAAAG
ATAGGCCGTGAGGCGATGATTGGTCAGCCACTGCGTCACTTGCGAGGGCG
TCGATTCCGGCATTATGTTCTGGCTATAATCGTCCATGTCAGCGGGCACA
TGCTGCGGTGAGACCATGTTTGTGGCGTCCATCAGCTTGAGGGTGGGCGA
GTTGGTCGATGTCACCGAGTTGATGGCTATGGGGCTGCTGCTGGTAGCCG
GCGATGCTGCACTTGGCGCAAACGGAAGCATTCCATCGTACTTGGGTATG
TGCACGGGCGAGTTTGGCCAAAGTTTCATATATTCGGGACTGTAGCAGCC
GGTTGTGGTGGCGGACATCACCAGGTCCAGGGATATATCGTTCATGATGG
TACACTCGTAGCTGGGCTG
BS04402.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:47:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30011-PA | 2760 | gem-RA | 1858..2760 | 919..17 | 4515 | 100 | Minus |
| CG30011-PC | 2799 | gem-RC | 1897..2799 | 919..17 | 4515 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:42:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gem-RG | 4514 | CG30011-RG | 3152..4054 | 919..17 | 4515 | 100 | Minus |
| gem-RC | 6172 | CG30011-RC | 4810..5712 | 919..17 | 4515 | 100 | Minus |
| gem-RA | 4930 | CG30011-RA | 3568..4470 | 919..17 | 4515 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:42:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10136595..10137012 | 434..17 | 2090 | 100 | Minus |
| 2R | 25286936 | 2R | 10135468..10135672 | 830..626 | 1025 | 100 | Minus |
| 2R | 25286936 | 2R | 10135742..10135857 | 625..510 | 580 | 100 | Minus |
| 2R | 25286936 | 2R | 10133929..10134017 | 919..831 | 445 | 100 | Minus |
| 2R | 25286936 | 2R | 10136460..10136535 | 510..435 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:42:22 has no hits.
BS04402.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:47:22 Download gff for
BS04402.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gem-PC | 1897..2799 | 17..919 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:08:31 Download gff for
BS04402.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30011-PC | 1897..2799 | 17..919 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:28:54 Download gff for
BS04402.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gem-RA | 4776..5688 | 8..919 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:02:53 Download gff for
BS04402.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gem-RA | 3568..4480 | 8..919 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:02:53 Download gff for
BS04402.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10133929..10134017 | 831..919 | 100 | -> | Minus |
| 2R | 10135468..10135672 | 626..830 | 100 | -> | Minus |
| 2R | 10135742..10135857 | 510..625 | 100 | -> | Minus |
| 2R | 10136461..10136535 | 435..509 | 100 | -> | Minus |
| 2R | 10136595..10137022 | 8..434 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:28:54 Download gff for
BS04402.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6021434..6021522 | 831..919 | 100 | -> | Minus |
| arm_2R | 6022973..6023177 | 626..830 | 100 | -> | Minus |
| arm_2R | 6023247..6023362 | 510..625 | 100 | -> | Minus |
| arm_2R | 6023966..6024040 | 435..509 | 100 | -> | Minus |
| arm_2R | 6024100..6024527 | 8..434 | 99 | | Minus |
BS04402.5prime Sequence
839 bp (637 high quality bases) assembled on 2005-12-01
> BS04402.5prime
GAAGTTATCAGTCGACATGGCGCTTTCGTTTCTATCCCAAAACTCCGGTC
TGTTGGATTTACAAAGCATATTCGATCCACAATATACTCATCATCAACAA
CAACAACAACAACTACTACATTTGAGCCACCACCCTCAACATCACATTCA
ACAACACCAAAATCAACAACTACAACAACAAGCGGAGCAAATTCAACAAC
ATCAACAAGAACGCACCCTTTCAACAAAGTTCGATTTGAACCTGTTCAAC
GAACTCGACCAAATGGAATTCAACAATTTAAATCGCAGTCAATATCAGAA
TAATAATAATAACAACAGTATCAGCAATAATCAAAACTCCAACAACAATA
CCAACACCACTAACGGTATCAGTGAAAATCTAAATCAGATCCAAAACCGC
CACTTCATCAGCGGCTACCACCATCAGCATATTGGATCGGACTATGAGCA
AGTGATCAACTTTGTTGACTCGCCGCCAAACTCAGAGGAATCGTGGACAG
ACGGACAGTCGAAGGACTCGCCGGGACCGCAGATCATCGACGTGCAGACC
ATTTACCTGAACAGCGGCTCACGCAAAAGACGAATGGATTGGGACTCTTT
GGACATTGGCCAAAGTGAGAACTCACCCACAGCATCGCAGAGCGGCGACT
TGCCCTCCAAAGTGGCCCATCAGGAGAAGGAAAAGCACAAGCGCGAGAAG
CACTCGGGTCGCAGCAGCTGGAGCGATGATATCGGCTTCGATCTGAACGC
CGAGTTTAACAGCAACTCATATTTGAACAATGAGAACTTCCTGTCGTTCT
CGCCCACGCTGACCACCCTGAAGCAGGAGCCCCAGACGG
BS04402.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:47:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30011-PA | 2760 | gem-RA | 1..823 | 17..839 | 4115 | 100 | Plus |
| CG30011-PC | 2799 | gem-RC | 1..485 | 17..501 | 2425 | 100 | Plus |
| CG30011-PC | 2799 | gem-RC | 522..862 | 499..839 | 1705 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:18:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gem-RG | 4514 | CG30011-RG | 1295..2117 | 17..839 | 4115 | 100 | Plus |
| gem-RA | 4930 | CG30011-RA | 1711..2533 | 17..839 | 4115 | 100 | Plus |
| gem-RC | 6172 | CG30011-RC | 2914..3398 | 17..501 | 2425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:17:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10127206..10127577 | 17..388 | 1860 | 100 | Plus |
| 2R | 25286936 | 2R | 10128821..10129031 | 499..709 | 1055 | 100 | Plus |
| 2R | 25286936 | 2R | 10128578..10128692 | 386..500 | 575 | 100 | Plus |
| 2R | 25286936 | 2R | 10131621..10131694 | 707..780 | 370 | 100 | Plus |
| 2R | 25286936 | 2R | 10131774..10131832 | 781..839 | 295 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 22:18:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 14..59 | 291..336 | 122 | 73.9 | Plus |
| mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 7052..7097 | 291..336 | 122 | 73.9 | Plus |
| mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 7049..7133 | 273..363 | 118 | 61.5 | Plus |
| mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 11..95 | 273..363 | 118 | 61.5 | Plus |
| Stalker4 | 7359 | Stalker4 STALKER4 7359bp | 2855..2908 | 271..324 | 117 | 68.5 | Plus |
| Stalker | 7256 | Stalker STALKER 7256bp | 2749..2802 | 271..324 | 117 | 68.5 | Plus |
| accord2 | 7650 | accord2 QBERT 7650bp | 6208..6296 | 385..297 | 112 | 58.4 | Minus |
BS04402.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:47:23 Download gff for
BS04402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gem-PA | 1..823 | 17..839 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:08:32 Download gff for
BS04402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30011-PA | 1..823 | 17..839 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:48:16 Download gff for
BS04402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gem-RA | 2916..3741 | 13..839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:02:09 Download gff for
BS04402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gem-RA | 1708..2533 | 13..839 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:02:09 Download gff for
BS04402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10128581..10128692 | 389..500 | 100 | -> | Plus |
| 2R | 10128823..10129029 | 501..707 | 100 | -> | Plus |
| 2R | 10131622..10131694 | 708..780 | 100 | -> | Plus |
| 2R | 10131774..10131832 | 781..839 | 100 | | Plus |
| 2R | 10127199..10127577 | 11..388 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:48:16 Download gff for
BS04402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6014704..6015082 | 11..388 | 99 | -> | Plus |
| arm_2R | 6016086..6016197 | 389..500 | 100 | -> | Plus |
| arm_2R | 6016328..6016534 | 501..707 | 100 | -> | Plus |
| arm_2R | 6019127..6019199 | 708..780 | 100 | -> | Plus |
| arm_2R | 6019279..6019337 | 781..839 | 100 | | Plus |
BS04402.complete Sequence
2792 bp assembled on 2008-08-15
GenBank Submission: KX799667
> BS04402.complete
GAAGTTATCAGTCGACATGGCGCTTTCGTTTCTATCCCAAAACTCCGGTC
TGTTGGATTTACAAAGCATATTCGATCCACAATATACTCATCATCAACAA
CAACAACAACAACTACTACATTTGAGCCACCACCCTCAACATCACATTCA
ACAACACCAAAATCAACAACTACAACAACAAGCGGAGCAAATTCAACAAC
ATCAACAAGAACGCACCCTTTCAACAAAGTTCGATTTGAACCTGTTCAAC
GAACTCGACCAAATGGAATTCAACAATTTAAATCGCAGTCAATATCAGAA
TAATAATAATAACAACAGTATCAGCAATAATCAAAACTCCAACAACAATA
CCAACACCACTAACGGTATCAGTGAAAATCTAAATCAGATCCAAAACCGC
CACTTCATCAGCGGCTACCACCATCAGCATATTGGATCGGACTATGAGCA
AGTGATCAACTTTGTTGACTCGCCGCCAAACTCAGAGGAATCGTGGACAG
ACGGACAGTCGAAGGACTCGCCGGGACCGCAGATCATCGACGTGCAGACC
ATTTACCTGAACAGCGGCTCACGCAAAAGACGAATGGATTGGGACTCTTT
GGACATTGGCCAAAGTGAGAACTCACCCACAGCATCGCAGAGCGGCGACT
TGCCCTCCAAAGTGGCCCATCAGGAGAAGGAAAAGCACAAGCGCGAGAAG
CACTCGGGTCGCAGCAGCTGGAGCGATGATATCGGCTTCGATCTGAACGC
CGAGTTTAACAGCAACTCATATTTGAACAATGAGAACTTCCTGTCGTTCT
CGCCCACGCTGACCACCCTGAAGCAGGAGCCCCAGACGGATCAGATCAAG
CCGAGCCCCAAGGTATCCCTGGATAATGCCTCCGCATCGCCCTCCATCGC
CATTGCCAAGTTGGATGAGGTCCAGAACTCGCCGTCGCAGGCTATTTCTG
GCCAAGACTCGGCTAACGGATCGGGATCGGCCGCAAACGGCAAGCATGAT
GTAAACTCCGGACTCGCCTGCGGGTGTGGCTCTCCTCAGGGTTCACCACT
AGCCAACGCCGAGTATGAGTTGAACGAAAAGGGAAAGCCCCAGCAACTTA
GCGTTTTGGATCCTGCTAAAATCGAGATCGGTTCGGCCAACGGAGCTACC
CATGCCGAGGATCACAAATTTCAGTACATTTTGGCAGCGGCCACTTCGAT
CGCCACCAAGAACAATGAGGAGACTTTGACGTACCTCAACCAAGGCCAGA
GCTACGAAATAAAGCTGAAGAAGATCGGAGACCTGTCCCTCTATAGGGAT
AAGATACTGAAGAGCGTGATCAAGATCTGTTTCCACGAGCGCCGCCTGCA
GTTCATGGAGCGCGAACAGATGCAGCAATGGCAGCAATCCCGCCCAGGCG
AACGCATCATTGAGGTGGACGTACCGCTTTCGTACGGCCTCTGCCACGTG
TCGCAGCCGTTGAGCTCCGGCTCACTGAACACTGTCGAGATCTTCTGGGA
CCCACTGAAGGAGGTCGGCGTCTACATCAAGGTCAACTGCATTTCAACCG
AATTTACCCCAAAGAAGCACGGCGGCGAGAAGGGTGTGCCCTTCCGACTG
CAAATTGAAACCTATATAGAAAACACAAACAGTGCCACCGCCAGCGGCTC
GGGCGGCAGCAACAACAGCGCCATCGCCAGTGGCAGCGGAAGCAGTGGCT
CCGCTGCACCAGCATCTCCGGAACGGACACCCAGTGCCGGCAGCAATGGT
AAACAGGCGGTCCACGCAGCTGCCTGCCAGATCAAGGTTTTTAAGCTAAA
AGGAGCTGATCGCAAACATAAACAGGATCGGGAGAAGATCCAGAAGCGAC
CGCAATCGGAGCAGGAGAAGTTCCAGCCCAGCTACGAGTGTACCATCATG
AACGATATATCCCTGGACCTGGTGATGTCCGCCACCACAACCGGCTGCTA
CAGTCCCGAATATATGAAACTTTGGCCAAACTCGCCCGTGCACATACCCA
AGTACGATGGAATGCTTCCGTTTGCGCCAAGTGCAGCATCGCCGGCTACC
AGCAGCAGCCCCATAGCCATCAACTCGGTGACATCGACCAACTCGCCCAC
CCTCAAGCTGATGGACGCCACAAACATGGTCTCACCGCAGCATGTGCCCG
CTGACATGGACGATTATAGCCAGAACATAATGCCGGAATCGACGCCCTCG
CAAGTGACGCAGTGGCTGACCAATCATCGCCTCACGGCCTATCTTTCAAC
GTTTGCACAGTTCTCGGGAGCGGATATCATGCGCATGTCCAAGGAGGATT
TGATTCAAATTTGCGGCCTGGCCGATGGCATTCGCATGTTCAACATTTTG
CGCGCCAAAACTATTGCTCCCAGGCTAACGTTGTACGCCAGCGTGGATGG
ATGCAGCTACAATGCCATCTACTTGTTGTCGAACACGGCCAAGGAGCTGC
AGCAGAAGCTTTTCAAGATGCCCGGCTTCTACGAGTTCATGGCCAAGGCC
AGTGCCCAGGAGAACGGAGCCGGTGGAGCAGCCACTGCAGCTGCTGCAGC
ACTCTTCAACAATTGGGGGATGCACTCCAAGTATTCGGGCAGCGGCTCCA
ATATCTTCAACGACGCCAACAAGAGCTGCGTGTACATATCGGGGCCATCG
GGCATCCTTGTGACCATCACCGACGAGGTGCTGAACAACGAGATCAAGGA
CGGCAGCCTCTACGCGCTGGAGGTGCAGGCCGGCAAGGTGATCCTTAAGC
TGATCAACAAGCAGGACAACAACTAAAAGCTTTCTAGACCAT
BS04402.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:45:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gem-RG | 2760 | CG30011-PG | 1..2760 | 17..2776 | 13800 | 100 | Plus |
| gem-RA | 2760 | CG30011-PA | 1..2760 | 17..2776 | 13800 | 100 | Plus |
| gem-RC | 2799 | CG30011-PC | 522..2799 | 499..2776 | 11390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:45:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gem-RG | 4514 | CG30011-RG | 1295..4054 | 17..2776 | 13800 | 100 | Plus |
| gem-RA | 4930 | CG30011-RA | 1711..4470 | 17..2776 | 13800 | 100 | Plus |
| gem-RC | 6172 | CG30011-RC | 3435..5712 | 499..2776 | 11390 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:45:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10132748..10133225 | 1311..1788 | 2390 | 100 | Plus |
| 2R | 25286936 | 2R | 10136595..10137012 | 2359..2776 | 2090 | 100 | Plus |
| 2R | 25286936 | 2R | 10131774..10132160 | 781..1167 | 1935 | 100 | Plus |
| 2R | 25286936 | 2R | 10127206..10127577 | 17..388 | 1860 | 100 | Plus |
| 2R | 25286936 | 2R | 10128821..10129031 | 499..709 | 1055 | 100 | Plus |
| 2R | 25286936 | 2R | 10135468..10135672 | 1963..2167 | 1025 | 100 | Plus |
| 2R | 25286936 | 2R | 10133840..10134017 | 1785..1962 | 890 | 100 | Plus |
| 2R | 25286936 | 2R | 10132305..10132449 | 1168..1312 | 725 | 100 | Plus |
| 2R | 25286936 | 2R | 10135742..10135857 | 2168..2283 | 580 | 100 | Plus |
| 2R | 25286936 | 2R | 10128578..10128692 | 386..500 | 575 | 100 | Plus |
| 2R | 25286936 | 2R | 10136460..10136535 | 2283..2358 | 380 | 100 | Plus |
| 2R | 25286936 | 2R | 10131621..10131694 | 707..780 | 370 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 10:45:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6751..6876 | 1620..1745 | 161 | 60.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6711..6859 | 1599..1746 | 139 | 57.6 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 129..213 | 1628..1708 | 128 | 63.5 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9159..9243 | 1628..1708 | 128 | 63.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6801..6896 | 1622..1716 | 126 | 60.4 | Plus |
| mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 14..59 | 291..336 | 122 | 73.9 | Plus |
| mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 7052..7097 | 291..336 | 122 | 73.9 | Plus |
| mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 11..95 | 273..363 | 118 | 61.5 | Plus |
| mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 7049..7133 | 273..363 | 118 | 61.5 | Plus |
| Stalker4 | 7359 | Stalker4 STALKER4 7359bp | 2855..2908 | 271..324 | 117 | 68.5 | Plus |
| Stalker | 7256 | Stalker STALKER 7256bp | 2749..2802 | 271..324 | 117 | 68.5 | Plus |
BS04402.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:25:32 Download gff for
BS04402.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gem-RA | 1858..4630 | 13..2785 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:21:01 Download gff for
BS04402.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gem-RA | 2919..5676 | 17..2774 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:54:24 Download gff for
BS04402.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gem-RA | 1861..4618 | 17..2774 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:30:06 Download gff for
BS04402.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gem-RA | 1711..4468 | 17..2774 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:30:06 Download gff for
BS04402.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10133842..10134017 | 1787..1962 | 100 | -> | Plus |
| 2R | 10135468..10135672 | 1963..2167 | 100 | -> | Plus |
| 2R | 10135742..10135857 | 2168..2283 | 100 | -> | Plus |
| 2R | 10136461..10136535 | 2284..2358 | 100 | -> | Plus |
| 2R | 10127206..10127577 | 17..388 | 100 | -> | Plus |
| 2R | 10128581..10128692 | 389..500 | 100 | -> | Plus |
| 2R | 10128823..10129029 | 501..707 | 100 | -> | Plus |
| 2R | 10131622..10131694 | 708..780 | 100 | -> | Plus |
| 2R | 10131774..10132160 | 781..1167 | 100 | -> | Plus |
| 2R | 10132305..10132449 | 1168..1312 | 100 | -> | Plus |
| 2R | 10132750..10133223 | 1313..1786 | 100 | -> | Plus |
| 2R | 10136595..10137010 | 2359..2774 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:21:01 Download gff for
BS04402.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6021347..6021522 | 1787..1962 | 100 | -> | Plus |
| arm_2R | 6022973..6023177 | 1963..2167 | 100 | -> | Plus |
| arm_2R | 6023247..6023362 | 2168..2283 | 100 | -> | Plus |
| arm_2R | 6023966..6024040 | 2284..2358 | 100 | -> | Plus |
| arm_2R | 6014711..6015082 | 17..388 | 100 | -> | Plus |
| arm_2R | 6016086..6016197 | 389..500 | 100 | -> | Plus |
| arm_2R | 6016328..6016534 | 501..707 | 100 | -> | Plus |
| arm_2R | 6019127..6019199 | 708..780 | 100 | -> | Plus |
| arm_2R | 6019279..6019665 | 781..1167 | 100 | -> | Plus |
| arm_2R | 6019810..6019954 | 1168..1312 | 100 | -> | Plus |
| arm_2R | 6020255..6020728 | 1313..1786 | 100 | -> | Plus |
| arm_2R | 6024100..6024515 | 2359..2774 | 100 | | Plus |
BS04402.pep Sequence
Translation from 16 to 2775
> BS04402.pep
MALSFLSQNSGLLDLQSIFDPQYTHHQQQQQQLLHLSHHPQHHIQQHQNQ
QLQQQAEQIQQHQQERTLSTKFDLNLFNELDQMEFNNLNRSQYQNNNNNN
SISNNQNSNNNTNTTNGISENLNQIQNRHFISGYHHQHIGSDYEQVINFV
DSPPNSEESWTDGQSKDSPGPQIIDVQTIYLNSGSRKRRMDWDSLDIGQS
ENSPTASQSGDLPSKVAHQEKEKHKREKHSGRSSWSDDIGFDLNAEFNSN
SYLNNENFLSFSPTLTTLKQEPQTDQIKPSPKVSLDNASASPSIAIAKLD
EVQNSPSQAISGQDSANGSGSAANGKHDVNSGLACGCGSPQGSPLANAEY
ELNEKGKPQQLSVLDPAKIEIGSANGATHAEDHKFQYILAAATSIATKNN
EETLTYLNQGQSYEIKLKKIGDLSLYRDKILKSVIKICFHERRLQFMERE
QMQQWQQSRPGERIIEVDVPLSYGLCHVSQPLSSGSLNTVEIFWDPLKEV
GVYIKVNCISTEFTPKKHGGEKGVPFRLQIETYIENTNSATASGSGGSNN
SAIASGSGSSGSAAPASPERTPSAGSNGKQAVHAAACQIKVFKLKGADRK
HKQDREKIQKRPQSEQEKFQPSYECTIMNDISLDLVMSATTTGCYSPEYM
KLWPNSPVHIPKYDGMLPFAPSAASPATSSSPIAINSVTSTNSPTLKLMD
ATNMVSPQHVPADMDDYSQNIMPESTPSQVTQWLTNHRLTAYLSTFAQFS
GADIMRMSKEDLIQICGLADGIRMFNILRAKTIAPRLTLYASVDGCSYNA
IYLLSNTAKELQQKLFKMPGFYEFMAKASAQENGAGGAATAAAAALFNNW
GMHSKYSGSGSNIFNDANKSCVYISGPSGILVTITDEVLNNEIKDGSLYA
LEVQAGKVILKLINKQDNN*
BS04402.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:34:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gem-PG | 919 | CG30011-PG | 1..919 | 1..919 | 4784 | 100 | Plus |
| gem-PA | 919 | CG30011-PA | 1..919 | 1..919 | 4784 | 100 | Plus |
| gem-PC | 932 | CG30011-PC | 1..932 | 1..919 | 4760 | 98.6 | Plus |
| gem-PF | 270 | CG30011-PF | 1..270 | 650..919 | 1390 | 100 | Plus |
| grh-PO | 698 | CG42311-PO | 299..484 | 385..611 | 209 | 27.3 | Plus |
