Clone Sequence Records
BS04404.3prime Sequence
934 bp (826 high quality bases) assembled on 2005-12-01
> BS04404.3prime
ATGGTCTAGAAAGCTTTCAGTGCAAAAAAGGCGGCAGGACGTAGCTCTGT
CCCTGCTGCTGCTGCTGCTGTTGGGAGACCTCCTCGCTCTTGATCACAGT
CTGCATGCCGCCGCTGTCGTTGTCATCGCTGCTGGTGCCGCCCGCGGATG
CAGCTCCTCCCGTCGCCGTGGTCACATAGTGCTGGCCCTGCGCCTCCACC
AGATGACAGCTGGCGCCGGGACTTAGCTCCAGACCACCTCCACTCTGATG
GCACTGCAGGTGCACGTATTTGGCCTCCTCGGCGCTCAGGTACTTGCCAT
TGAGTTGCTGCTGCTGCTGCTGCTGCTGTTGGTGGGCATGGACGGTGACC
AGTGTGCCGTCGGCCAGTTGCTGCTGCTGGGCGGTCTGCAGTTCCGCCGT
CTGATAGCTGCCGCCATTGGCCACCGACTCATCTCCGTTTCCGGCCACCG
AACCGGTTGTGGCGCCCATTTCCATGCGCGTGGGACTACCGTACTCGTAG
TGACGCATCGGGAAGAGCTGGCTTTCGTGCACATAGGCACCGTACTGGCC
GGAATAGGTGCCATACGGACTGGCCGCCGGCGAGAGCAGGCTGAACTGGG
GCGTCAGTTCGTAGGGCGTCTGGTAGCTGGTCCAGCTGTCCATGCTGCCC
GGCGGCGTGACCGTCGTCGTCTGCGGGTAGCTAGTGAATGGTGGGGCTAG
GGTTCCGGGATTCAGTGTCGCCGTCGGCGGAGTGCTCGTCTTGATGTAGC
CCGTCTTGCGCGGTGGCTCGTGCTTGCGCCACTTGGCCCGTCGGTTCTGG
AACCACACCTGCACACGGGATTCGCTCAGATTCAGCTTGATGGCCAGCTC
CTCGCGGGCGAAAACATCCGGATACGGAGCACGTTCAAAGGCACGCTCCA
ACTCCTCCAGCTGGAAGGCAGTAAAGGTGGTTCT
BS04404.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:47:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31240-PA | 1839 | repo-RA | 922..1839 | 934..17 | 4565 | 99.8 | Minus |
CG2819-PA | 1074 | Pph13-RA | 160..203 | 814..771 | 195 | 97.7 | Minus |
CG11294-PA | 786 | CG11294-RA | 205..245 | 811..771 | 155 | 95.1 | Minus |
CG2851-PA | 1260 | Gsc-RA | 992..1031 | 810..771 | 150 | 95 | Minus |
CG33980-PA | 1923 | CG33980-RA | 823..861 | 811..773 | 145 | 94.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:38:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
repo-RA | 2996 | CG31240-RA | 1227..2144 | 934..17 | 4575 | 99.9 | Minus |
CG34340-RF | 2989 | CG34340-RF | 776..916 | 913..773 | 255 | 79.6 | Minus |
CG34340-RE | 2612 | CG34340-RE | 776..916 | 913..773 | 255 | 79.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:38:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18237833..18238750 | 934..17 | 4575 | 99.9 | Minus |
2L | 23513712 | 2L | 578273..578320 | 814..767 | 210 | 95.8 | Minus |
X | 23542271 | X | 8692709..8692751 | 771..813 | 185 | 95.3 | Plus |
Blast to na_te.dros performed 2015-02-10 22:38:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6791..6821 | 334..304 | 137 | 93.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2280..2432 | 458..305 | 118 | 59.1 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6806..6917 | 419..304 | 110 | 62.2 | Minus |
BS04404.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:47:25 Download gff for
BS04404.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
repo-PA | 922..1839 | 17..934 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:08:33 Download gff for
BS04404.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31240-PA | 922..1839 | 17..934 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:27:57 Download gff for
BS04404.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
repo-RA | 1225..2145 | 14..934 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:04:00 Download gff for
BS04404.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
repo-RA | 1227..2147 | 14..934 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:04:00 Download gff for
BS04404.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18237833..18238748 | 19..934 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:27:57 Download gff for
BS04404.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14063555..14064470 | 19..934 | 99 | -> | Minus |
BS04404.5prime Sequence
870 bp (798 high quality bases) assembled on 2005-12-01
> BS04404.5prime
GAAGTTATCAGTCGACATGGAACACGATAGCTTCGATGATCCCATTTTCG
GGGAGTTCGGCGGCGGGCCACTCAATCCACTGGGCGCCAAGCCACTGATG
CCCACCACAACGGCCATGCATCCCGTGATGCTGGGCAGTGTCCACGAGTT
GTGCAGCCAACAGCAGCAGCAGCAGCAGCAGCAACGATTGCCCGACTGCA
ACACCATACTGCCGAATGGCGGAGGAGGAGGAGCAGGATCTGGCGGCGCT
GGAGGATCGCCCAACTATGTGACCAAGCTGGATTTTGTCAACAAGATGGG
CTGCTACTCGCCCAGCCAGAAGTACGAGTACATTAGTGCGCCGCAAAAAC
TGGTGGAGCAGCAGCAGCAGCAGCAGCATCATCATCAACATCATCAGCAC
TACACGGCCACGCCCCCGCCCAGCCACAATGGCATCCTGCTGCACAAGCA
ATCCTCCCAGCAGCAACAGCAGCAGCAGCAACAGCTGGTGGGCATCCTGG
ACTATCATCCGCTCAATGGCAAGCTGGACTACTCCTCGTCGCCCAAAGAT
CAGTACGAGCCGCAGCAGCTGCAGCATCTGTACGGCGGCAGTCCGCATCA
TCTGGACCATTTGGATCATGGCAGTGATGGCTTGCTCCAGGACTCCTCGC
CCGTCATGATCAACGGAGGATCCGCTGGTGGCAAGCTAAAGAAGCCCGAT
GAGATGTGTTCGCAGTTGGAGGCGGGTGGTGCTGGAGTTACTCCGCCAAG
TAGTTCCTCCACGGTGGTTAATGGCACCACCAATGGCACTGGCAACGCCA
ACTCCTCCTCCTCCGCTGGCGTCGGCATTCAGGGGGCGGCGGGCACAGCG
GGGGGGCGTGGCAGCCTCTG
BS04404.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:47:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31240-PA | 1839 | repo-RA | 1..839 | 17..855 | 4195 | 100 | Plus |
CG15771-PA | 1068 | CG15771-RA | 944..978 | 363..397 | 150 | 97.1 | Plus |
CG18599-PA | 1428 | CG18599-RA | 252..293 | 358..399 | 135 | 92.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:38:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
repo-RA | 2996 | CG31240-RA | 306..1153 | 17..865 | 4220 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:38:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18236497..18237335 | 17..855 | 4195 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:38:33 has no hits.
BS04404.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:47:26 Download gff for
BS04404.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
repo-PA | 1..853 | 17..870 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:08:35 Download gff for
BS04404.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31240-PA | 1..853 | 17..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:20:27 Download gff for
BS04404.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
repo-RA | 298..1156 | 10..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:45:36 Download gff for
BS04404.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
repo-RA | 300..1158 | 10..870 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:45:36 Download gff for
BS04404.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18236491..18237349 | 10..870 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:20:27 Download gff for
BS04404.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14062213..14063071 | 10..870 | 99 | | Plus |
BS04404.complete Sequence
1871 bp assembled on 2008-01-02
GenBank Submission: KX796800
> BS04404.complete
GAAGTTATCAGTCGACATGGAACACGATAGCTTCGATGATCCCATTTTCG
GGGAGTTCGGCGGCGGGCCACTCAATCCACTGGGCGCCAAGCCACTGATG
CCCACCACAACGGCCATGCATCCCGTGATGCTGGGCAGTGTCCACGAGTT
GTGCAGCCAACAGCAGCAGCAGCAGCAGCAGCAACGATTGCCCGACTGCA
ACACCATACTGCCGAATGGCGGAGGAGGAGGAGCAGGATCTGGCGGCGCT
GGAGGATCGCCCAACTATGTGACCAAGCTGGATTTTGTCAACAAGATGGG
CTGCTACTCGCCCAGCCAGAAGTACGAGTACATTAGTGCGCCGCAAAAAC
TGGTGGAGCAGCAGCAGCAGCAGCAGCATCATCATCAACATCATCAGCAC
TACACGGCCACGCCCCCGCCCAGCCACAATGGCATCCTGCTGCACAAGCA
ATCCTCCCAGCAGCAACAGCAGCAGCAGCAACAGCTGGTGGGCATCCTGG
ACTATCATCCGCTCAATGGCAAGCTGGACTACTCCTCGTCGCCCAAAGAT
CAGTACGAGCCGCAGCAGCTGCAGCATCTGTACGGCGGCAGTCCGCATCA
TCTGGACCATTTGGATCATGGCAGTGATGGCTTGCTCCAGGACTCCTCGC
CCGTCATGATCAACGGAGGATCCGCTGGTGGCAAGCTAAAGAAGCCCGAT
GAGATGTGTTCGCAGTTGGAGGCGGGTGGTGCTGGAGTTACTCCGCCAAG
TAGTTCCTCCACGGTGGTTAATGGCACCACCAATGGCACTGGCAACGCCA
ACTCCTCCTCCTCCGCTGGCGTCGGCATTCAGGGGGCGGCGGGCACAGCG
GGGGGCGTGGCAGCTCCTGCAGCCAAAAAGGACGGAAGCAGCAGCAAGAA
GAAGGGCGATCCCAATGGCATCAAGAAGAAGAAGACGAGAACCACCTTTA
CTGCCTACCAGCTGGAGGAGTTGGAGCGTGCCTTTGAACGTGCTCCGTAT
CCGGATGTTTTCGCCCGCGAGGAGCTGGCCATCAAGCTGAATCTGAGCGA
ATCCCGTGTGCAGGTGTGGTTCCAGAACCGACGGGCCAAGTGGCGCAAGC
ACGAGCCACCGCGCAAGACGGGCTACATCAAGACGAGCACTCCGCCGACG
GCGACACTGAATCCCGGAACCCTAGCCCCACCATTCACTAGCTACCCGCA
GACGACGACGGTCACGCCGCCGGGCAGCATGGACAGCTGGACCAGCTACC
AGACGCCCTACGAACTGACGCCCCAGTTCAGCCTGCTCTCGCCGGCGGCC
AGTCCGTATGGCACCTATTCCGGCCAGTACGGTGCCTATGTGCACGAAAG
CCAGCTCTTCCCGATGCGTCACTACGAGTACGGTAGTCCCACGCGCATGG
AAATGGGCGCCACAACCGGTTCGGTGGCCGGAAACGGAGATGAGTCGGTG
GCCAATGGCGGCAGCTATCAGACGGCGGAACTGCAGACCGCCCAGCAGCA
GCAACTGGCCGACGGCACACTGGTCACCGTCCATGCCCACCAACAGCAGC
AGCAGCAGCAGCAGCAACTCAATGGCAAGTACCTGAGCGCCGAGGAGGCC
AAATACGTGCACCTGCAGTGCCATCAGAGTGGAGGTGGTCTGGAGCTAAG
TCCCGGCGCCAGCTGTCATCTGGTGGAGGCGCAGGGCCAGCACTATGTGA
CCACGGCGACGGGAGGAGCTGCATCCGCGGGCGGCACCAGCAGCGATGAC
AACGACAGCGGCGGCATGCAGACTGTGATCAAGAGCGAGGAGGTCTCCCA
ACAGCAGCAGCAGCAGCAGGGACAGAGCTACGTCCTGCCGCCTTTTTTGC
ACTGAAAGCTTTCTAGACCAT
BS04404.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:04:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
repo-RA | 1839 | CG31240-PA | 1..1839 | 17..1855 | 9195 | 100 | Plus |
CG34340-RF | 1764 | CG34340-PF | 187..327 | 959..1099 | 255 | 78.7 | Plus |
CG34340-RE | 1764 | CG34340-PE | 187..327 | 959..1099 | 255 | 78.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:04:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
repo-RA | 2996 | CG31240-RA | 306..2144 | 17..1855 | 9195 | 100 | Plus |
CG34340-RF | 2989 | CG34340-RF | 776..916 | 959..1099 | 255 | 78.7 | Plus |
CG34340-RE | 2612 | CG34340-RE | 776..916 | 959..1099 | 255 | 78.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:04:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18236497..18237419 | 17..939 | 4615 | 100 | Plus |
3R | 32079331 | 3R | 18237833..18238750 | 938..1855 | 4590 | 100 | Plus |
2L | 23513712 | 2L | 578273..578320 | 1058..1105 | 210 | 95.8 | Plus |
X | 23542271 | X | 8692709..8692751 | 1101..1059 | 185 | 95.3 | Minus |
Blast to na_te.dros performed 2014-11-27 17:04:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2280..2432 | 1414..1567 | 118 | 59.1 | Plus |
BS04404.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:05:00 Download gff for
BS04404.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
repo-RA | 1..1839 | 17..1855 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:35:12 Download gff for
BS04404.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
repo-RA | 304..2141 | 17..1854 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:59 Download gff for
BS04404.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
repo-RA | 304..2141 | 17..1854 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:05:01 Download gff for
BS04404.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
repo-RA | 298..2145 | 10..1858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:33:57 Download gff for
BS04404.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
repo-RA | 306..2143 | 17..1854 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:33:57 Download gff for
BS04404.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18236497..18237419 | 17..939 | 100 | -> | Plus |
3R | 18237835..18238749 | 940..1854 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:59 Download gff for
BS04404.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14062219..14063141 | 17..939 | 100 | -> | Plus |
arm_3R | 14063557..14064471 | 940..1854 | 100 | | Plus |
BS04404.pep Sequence
Translation from 16 to 1854
> BS04404.pep
MEHDSFDDPIFGEFGGGPLNPLGAKPLMPTTTAMHPVMLGSVHELCSQQQ
QQQQQQRLPDCNTILPNGGGGGAGSGGAGGSPNYVTKLDFVNKMGCYSPS
QKYEYISAPQKLVEQQQQQQHHHQHHQHYTATPPPSHNGILLHKQSSQQQ
QQQQQQLVGILDYHPLNGKLDYSSSPKDQYEPQQLQHLYGGSPHHLDHLD
HGSDGLLQDSSPVMINGGSAGGKLKKPDEMCSQLEAGGAGVTPPSSSSTV
VNGTTNGTGNANSSSSAGVGIQGAAGTAGGVAAPAAKKDGSSSKKKGDPN
GIKKKKTRTTFTAYQLEELERAFERAPYPDVFAREELAIKLNLSESRVQV
WFQNRRAKWRKHEPPRKTGYIKTSTPPTATLNPGTLAPPFTSYPQTTTVT
PPGSMDSWTSYQTPYELTPQFSLLSPAASPYGTYSGQYGAYVHESQLFPM
RHYEYGSPTRMEMGATTGSVAGNGDESVANGGSYQTAELQTAQQQQLADG
TLVTVHAHQQQQQQQQQLNGKYLSAEEAKYVHLQCHQSGGGLELSPGASC
HLVEAQGQHYVTTATGGAASAGGTSSDDNDSGGMQTVIKSEEVSQQQQQQ
QGQSYVLPPFLH*
BS04404.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:40:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
repo-PA | 612 | CG31240-PA | 1..612 | 1..612 | 3264 | 100 | Plus |
Rx-PB | 904 | CG10052-PB | 450..679 | 113..405 | 294 | 32.5 | Plus |
al-PA | 408 | CG3935-PA | 17..144 | 223..363 | 274 | 43.3 | Plus |
prd-PA | 590 | CG6716-PA | 133..455 | 243..593 | 256 | 27.5 | Plus |
prd-PB | 613 | CG6716-PB | 156..478 | 243..593 | 256 | 27.5 | Plus |