Clone BS04405 Report

Search the DGRC for BS04405

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:44
Well:5
Vector:pDNR-Dual
Associated Gene/Transcriptlov-RB
Protein status:BS04405.pep: full length peptide match
Sequenced Size:3173

Clone Sequence Records

BS04405.3prime Sequence

849 bp (847 high quality bases) assembled on 2005-12-01

> BS04405.3prime
ATGGTCTAGAAAGCTTTCAATCATGCCCGGTCCCACCGTTGGATGGCGTA
AGTGGTGGGCCCGTCGCGCTTATCTCCCGACGGTGCTCCAGCGAGAGCGG
TATTCCAGGACCTGAGTAGTCTTCGTCCACGGAAGAGGACTGCTTCGATC
CAACAGACTTGCAGTCCTCATCCATGCTCACGCCAAGATGGTGCATAGCC
GCAGCTGCATGATGGCGTTCTGCCGGCGGCAAAAGGTTTAACATGCTCAG
AGGGAGGCCGGGAAAGCCGCCCGAAAAATCAGGGTAGAAACCCTGTGGGT
TGAAGGGATTGAACAGGGCATTTGGGGCACTCAGTAAATCGGGCTCGGAA
CTGTTACTACGGGGTCCTCCTGGGGGTCCCAGGGGAAGTCCCAGATCCAG
GTCTAACTGTCCCATAGGCCCCAGTTCACCGGAATGCTGCATTGGTCCAC
TGCCGGAGGTCGGTGCTCCGCCTTGGGAATTAGCAGACCCCCCCGAACCG
TTGCTGCTCATGGAGTTCTTGTCCTTTTCCTTCTCCTTGCGCTCCTTGCT
CTTCTCATTCTTCGTGGAACCACCGCTACCTCCGCCGATGCCCATTTGCA
GCATTTCTATCGGTGGTCCACTGATGCAGTCCTTCCGCAGCTGCTCCAGT
TTTAAACTCTTTCCGTATTTTCCCCGGACGTACATCAGTAGAGAATTGTA
GGGGATACCGAAAATCCGCGACGCCTGCGACGTGGTCATCTTTTTGTTCC
AAACGTGCTGCAGTGCCTCCGTCAGTTCTGTGTTAGTCCATGAGCGTGGA
GGACCGCCGCGTGGGGCTGAGTGCTGTCCCTTTGGTCGCGGCATTTTCT

BS04405.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:47:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG16778-PB 3141 Tkr-RB 2309..3141 849..17 4165 100 Minus
CG16778-PC 3141 Tkr-RC 2309..3141 849..17 4165 100 Minus
CG16778-PA 3141 Tkr-RA 2309..3141 849..17 4165 100 Minus
CG16778-PD 3141 Tkr-RD 2309..3141 849..17 4165 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:33:19
Subject Length Description Subject Range Query Range Score Percent Strand
lov-RF 4185 CG16778-RF 2857..3691 849..15 4175 100 Minus
lov-RE 3826 CG16778-RE 2498..3332 849..15 4175 100 Minus
lov-RD 4712 CG16778-RD 2752..3586 849..15 4175 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:33:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 25086906..25087734 15..843 4145 100 Plus
Blast to na_te.dros performed on 2015-02-10 18:33:18 has no hits.

BS04405.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:47:27 Download gff for BS04405.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16778-PB 2309..3141 17..849 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:08:36 Download gff for BS04405.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16778-PD 2309..3141 17..849 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:01:55 Download gff for BS04405.3prime
Subject Subject Range Query Range Percent Splice Strand
lov-RD 2752..3589 11..849 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:43:28 Download gff for BS04405.3prime
Subject Subject Range Query Range Percent Splice Strand
lov-RD 2752..3589 11..849 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:43:28 Download gff for BS04405.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 25086903..25087736 11..849 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:01:55 Download gff for BS04405.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20974426..20975259 11..849 99   Plus

BS04405.5prime Sequence

849 bp (631 high quality bases) assembled on 2005-12-01

> BS04405.5prime
GAAGTTATCAGTCGACATGTTAAAGGACGCCCACCAGAAGTTGATTAAAC
ATCGCCAATCGACGAAGCTCTCCATGACCGACTTCGCTTGTCAGGCGGCG
CCTGTAAAGCAGCCCCTGCCGCTAGAATTGCCGCTGCCTTTGTCAGTGCA
GCTACAGCTTTTAGCAAAGACTCCGACCAGTGATCACGCCCCAATGCACT
CTACGCCTCCGACGACCCCGCCTACGCCACCTCCTCTGCCCTTGAACATG
AGTCAATCGGCATCGGCGGTAACGGAAGCTGCTACTCCAGAAAACAGTCT
GCCTGCCACACCACCCTCAGAAGGTGCACTAGCTGTACCATCGGCCCCAC
AGGATCACTACAGCCTACGCTGGAACAACCACCAGAACCACATCCTGCGG
GCATTCGATGCACTGCTGAAGACCAAAACGCTGGTGGACGTGACCCTGGT
CTGCGCGGAGACTTCGATCCGGGCTCACAAAATGGTGCTCTCCGCCTGTT
CGCCCTTCTTCCAGCGCGTCTTTGCGGAAACTCCCTGCAAGCACCCAGTT
ATAGTGCTCAAGGATTTCCGGGGTTGGGTAGTGCAGGCCATTGTAGACTT
TATGTACCGCGGAGAGATCAGCGTGCCCCAGCAGAGACTCCAGACACTCA
TCCAGGCCGGAGAGTCGCTTCAAGTCCGAGGCTTGGTGGAGAGCTCTGTC
CCAGAACACACTCCCACACCGGCCGCTTCCCCCGATGATTTCGGGATGTT
GGACACCTCTATGCTGTCCTCTACCTTTGAGGACGAGTGTCCGACGATGG
GTCCCGACCCCTCTAAGGGTGGAAAGCTTTTGATGCCGTCCGCCCGACT

BS04405.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:47:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG16778-PB 3141 Tkr-RB 1..784 17..800 3920 100 Plus
CG16778-PC 3141 Tkr-RC 1..784 17..800 3920 100 Plus
CG16778-PA 3141 Tkr-RA 1..784 17..800 3920 100 Plus
CG16778-PD 3141 Tkr-RD 1..784 17..800 3920 100 Plus
CG16778-PB 3141 Tkr-RB 790..830 809..849 205 100 Plus
CG16778-PC 3141 Tkr-RC 790..830 809..849 205 100 Plus
CG16778-PA 3141 Tkr-RA 790..830 809..849 205 100 Plus
CG16778-PD 3141 Tkr-RD 790..830 809..849 205 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:14:49
Subject Length Description Subject Range Query Range Score Percent Strand
lov-RF 4185 CG16778-RF 548..1378 16..849 4095 99.6 Plus
lov-RE 3826 CG16778-RE 189..1019 16..849 4095 99.6 Plus
lov-RD 4712 CG16778-RD 443..1273 16..849 4095 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:14:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 25095634..25096464 849..16 4040 99.5 Minus
Blast to na_te.dros performed 2015-02-13 02:14:45
Subject Length Description Subject Range Query Range Score Percent Strand
TART-A 13424 TART-A 13424bp 10792..10893 164..65 108 58.8 Minus

BS04405.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:47:28 Download gff for BS04405.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16778-PD 1..830 17..849 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:08:38 Download gff for BS04405.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16778-PA 1..830 17..849 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:46:15 Download gff for BS04405.5prime
Subject Subject Range Query Range Percent Splice Strand
lov-RD 443..1273 16..849 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:30:58 Download gff for BS04405.5prime
Subject Subject Range Query Range Percent Splice Strand
lov-RD 443..1273 16..849 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:30:58 Download gff for BS04405.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 25095634..25096464 16..849 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:46:15 Download gff for BS04405.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20983157..20983987 16..849 99   Minus

BS04405.complete Sequence

3173 bp assembled on 2008-08-15

GenBank Submission: KX795532

> BS04405.complete
GAAGTTATCAGTCGACATGTTAAAGGACGCCCACCAGAAGTTGATTAAAC
ATCGCCAATCGACGAAGCTCTCCATGACCGACTTCGCTTGTCAGGCGGCG
CCTGTAAAGCAGCCCCTGCCGCTAGAATTGCCGCTGCCTTTGTCAGTGCA
GCTACAGCTTTTAGCAAAGACTCCGACCAGTGATCACGCCCCAATGCACT
CTACGCCTCCGACGACCCCGCCTACGCCACCTCCTCTGCCCTTGAACATG
AGTCAATCGGCATCGGCGGTAACGGAAGCTGCTACTCCAGAAAACAGTCT
GCCTGCCACACCACCCTCAGAAGGTGCACTAGCTGTACCATCGGCCCCAC
AGGATCACTACAGCCTACGCTGGAACAACCACCAGAACCACATCCTGCGG
GCATTCGATGCACTGCTGAAGACCAAAACGCTGGTGGACGTGACCCTGGT
CTGCGCGGAGACTTCGATCCGGGCTCACAAAATGGTGCTCTCCGCCTGTT
CGCCCTTCTTCCAGCGCGTCTTTGCGGAAACTCCCTGCAAGCACCCAGTT
ATAGTGCTCAAGGATTTCCGGGGTTGGGTAGTGCAGGCCATTGTAGACTT
TATGTACCGCGGAGAGATCAGCGTGCCCCAGCAGAGACTCCAGACACTCA
TCCAGGCCGGAGAGTCGCTTCAAGTCCGAGGCTTGGTGGAGAGCTCTGTC
CCAGAACACACTCCCACACCGGCCGCTTCCCCCGATGATTTCGGGATGTT
GGACACCTCTATGCTGTCCTCTACCTTTGAGGACGAGTGTCCGACGATGG
TCCGACCCTCTAAGGGTGGAAAGCTTTTGATGCCGTCCGCCCGACTGTTT
GGCAACGCTTCAAGCGCCATTGCTGCTCTAGGTTTGCGACGAAAACGAGA
GCAGGAGTCCGACCGCGACTTGGAGAGTGATCAGGAGCTGGGAGGCAGTT
CACCTATGCCACGACGTAAGCAAGCGCGACCGCGGCGCCGCTCCGGCGAT
GTGCCGCACGACTTTACCTTAAACAAAACCGATGCAGAATCCTTGCAAAC
TGTGATCAAGCACGAGCTTCTAGAGCGAGCGGAAAGAGATCAGGAAGAGG
CTCCTGATCAAGATAACAGCCAAGGGGAAGCTGAAAAAATTAGTTCGTCG
CCAGCAAAAACGTTGGTTGAACGGGCTAAGGAGCAAAAGTCCATGAAAGA
AGAAGGATCCGATCAACCACGCAGTCTAAACGAGAATCACCATCAACTCG
AGCTTGACGATGAGGACGACGACGATCAGGATCATGAAGAGGAAGAGGAG
CAAGACATTGAAGAGCTTATTCATACGACCAACGAGCTGAGGCGTCAGGC
TGCAGCAGCTGCTGCAAATGCAGCCGCCATGTCTCCCAACCCTTCTCCCT
GCCTCAGTGACGGGCCCGAGGACCTCTGCACCACTAAGAAAGGCAAGGAA
CTAATTTCTGGCCCCTCTAGTTCGGCAGACTGTGAGTCCAATAACAACAA
CAGCAGCAAGCTGCAGGACAACAACCAGCGCATAATGCTGTCTCTAAAGG
ACATCCGCCAACTAAACGCTAATCCGAACCCTACGGCCATCCACACGCCT
ACTAGCTGTTCTGGGGGCAACAACGGACTACTTACTTTCCCTCCGCCCGG
ACTTCGGCCTCCTGGTCTACCAGACAGCCCGCCCTGCCACATGGAAGCGC
TAGAGGCACAGATGCACGCAGCTGCTGCTGCTGCCGTGGCGGCTGCTGGA
TCTGGGGAGCATCCCTTCCATCATATGGAGCACCAGATGGAGATGTCTTT
GGCGGCTGCAGCGGCAGCTGCTGCGATGCATCAGCGTGAGCCACGGGATC
CCCGTGATGGGCGCGACCACAACGCATTTGCGAGCAATTTGCTGGGGCCA
ATGGGGATGCCCCCGTTCGGAGGACATAACGGAGGCCATCCGGGCAACAG
TGGTCCAGGAAACGGATGTCCTGGACAAGCTGCGCACGAAAGACTTGAGG
AGAGTATGAATCGACTGAGTAAGGAGCTTGGTAAGGAGTTTGGAAAGGAG
TTTGGAAAGGAGTTTGGAAAGGAGTTTGGTCCGGCATCGCCAATGAGTCT
GCAAGGTCCCTTCAATGCACCGGATGGACCCCCGCATCCGCCATCACCAT
TGCCCTTTCCTGGCATGTCCTCTGCGATGACGCTGACTCCGCCACATATG
TTTGGTCTCGACTCACCACTTGGACTCTTTCCACCCGGAATCGATCCTGG
CAAGCTTTATAACCCGTTAATGGAAATGAGCGATCCAAGGGACATGCCTG
GCGGGCCGCCTCCATTCCTTAAAAAGAAAATGCCGCGACCAAAGGGACAG
CACTCAGCCCCACGCGGCGGTCCTCCACGCTCATGGACTAACACAGAACT
GACGGAGGCACTGCAGCACGTTTGGAACAAAAAGATGACCACGTCGCAGG
CGTCGCGGATTTTCGGTATCCCCTACAATTCTCTACTGATGTACGTCCGG
GGAAAATACGGAAAGAGTTTAAAACTGGAGCAGCTGCGGAAGGACTGCAT
CAGTGGACCACCGATAGAAATGCTGCAAATGGGCATCGGCGGAGGTAGCG
GTGGTTCCACGAAGAATGAGAAGAGCAAGGAGCGCAAGGAGAAGGAAAAG
GACAAGAACTCCATGAGCAGCAACGGTTCGGGGGGGTCTGCTAATTCCCA
AGGCGGAGCACCGACCTCCGGCAGTGGACCAATGCAGCATTCCGGTGAAC
TGGGGCCTATGGGACAGTTAGACCTGGATCTGGGACTTCCCCTGGGACCC
CCAGGAGGACCCCGTAGTAACAGTTCCGAGCCCGATTTACTGAGTGCCCC
AAATGCCCTGTTCAATCCCTTCAACCCACAGGGTTTCTACCCTGATTTTT
CGGGCGGCTTTCCCGGCCTCCCTCTGAGCATGTTAAACCTTTTGCCGCCG
GCAGAACGCCATCATGCAGCTGCGGCTATGCACCATCTTGGCGTGAGCAT
GGATGAGGACTGCAAGTCTGTTGGATCGAAGCAGTCCTCTTCCGTGGACG
AAGACTACTCAGGTCCTGGAATACCGCTCTCGCTGGAGCACCGTCGGGAG
ATAAGCGCGACGGGCCCACCACTTACGCCATCCAACGGTGGGACCGGGCA
TGATTGAAAGCTTTCTAGACCAT

BS04405.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:52:52
Subject Length Description Subject Range Query Range Score Percent Strand
lov-RE 3432 CG16778-PE 1..3143 17..3159 15715 100 Plus
lov-RF 3141 CG16778-PF 1..3141 17..3157 15705 100 Plus
lov-RD 3141 CG16778-PD 1..3141 17..3157 15705 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:52:54
Subject Length Description Subject Range Query Range Score Percent Strand
lov-RF 4185 CG16778-RF 548..3691 16..3159 15720 100 Plus
lov-RE 3826 CG16778-RE 189..3332 16..3159 15720 100 Plus
lov-RD 4712 CG16778-RD 443..3586 16..3159 15720 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:52:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 25094282..25096464 2198..16 10915 100 Minus
2R 25286936 2R 25086906..25087734 3159..2331 4145 100 Minus
2R 25286936 2R 25091592..25091723 2330..2199 660 100 Minus
Blast to na_te.dros performed 2014-11-27 13:52:51
Subject Length Description Subject Range Query Range Score Percent Strand
hopper2 1593 hopper2 HOPPER2 1593bp 35..112 1325..1248 120 61.5 Minus

BS04405.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:22:16 Download gff for BS04405.complete
Subject Subject Range Query Range Percent Splice Strand
Tkr-RA 462..3608 16..3163 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:34:37 Download gff for BS04405.complete
Subject Subject Range Query Range Percent Splice Strand
lov-RD 449..3583 22..3156 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:04:03 Download gff for BS04405.complete
Subject Subject Range Query Range Percent Splice Strand
Tkr-RA 468..3602 22..3156 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:28:42 Download gff for BS04405.complete
Subject Subject Range Query Range Percent Splice Strand
lov-RD 449..3583 22..3156 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:28:42 Download gff for BS04405.complete
Subject Subject Range Query Range Percent Splice Strand
2R 25086909..25087734 2331..3156 100 <- Minus
2R 25091592..25091723 2199..2330 100 <- Minus
2R 25094282..25096458 22..2198 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:34:37 Download gff for BS04405.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20974432..20975257 2331..3156 100 <- Minus
arm_2R 20979115..20979246 2199..2330 100 <- Minus
arm_2R 20981805..20983981 22..2198 100   Minus

BS04405.pep Sequence

Translation from 16 to 3156

> BS04405.pep
MLKDAHQKLIKHRQSTKLSMTDFACQAAPVKQPLPLELPLPLSVQLQLLA
KTPTSDHAPMHSTPPTTPPTPPPLPLNMSQSASAVTEAATPENSLPATPP
SEGALAVPSAPQDHYSLRWNNHQNHILRAFDALLKTKTLVDVTLVCAETS
IRAHKMVLSACSPFFQRVFAETPCKHPVIVLKDFRGWVVQAIVDFMYRGE
ISVPQQRLQTLIQAGESLQVRGLVESSVPEHTPTPAASPDDFGMLDTSML
SSTFEDECPTMVRPSKGGKLLMPSARLFGNASSAIAALGLRRKREQESDR
DLESDQELGGSSPMPRRKQARPRRRSGDVPHDFTLNKTDAESLQTVIKHE
LLERAERDQEEAPDQDNSQGEAEKISSSPAKTLVERAKEQKSMKEEGSDQ
PRSLNENHHQLELDDEDDDDQDHEEEEEQDIEELIHTTNELRRQAAAAAA
NAAAMSPNPSPCLSDGPEDLCTTKKGKELISGPSSSADCESNNNNSSKLQ
DNNQRIMLSLKDIRQLNANPNPTAIHTPTSCSGGNNGLLTFPPPGLRPPG
LPDSPPCHMEALEAQMHAAAAAAVAAAGSGEHPFHHMEHQMEMSLAAAAA
AAAMHQREPRDPRDGRDHNAFASNLLGPMGMPPFGGHNGGHPGNSGPGNG
CPGQAAHERLEESMNRLSKELGKEFGKEFGKEFGKEFGPASPMSLQGPFN
APDGPPHPPSPLPFPGMSSAMTLTPPHMFGLDSPLGLFPPGIDPGKLYNP
LMEMSDPRDMPGGPPPFLKKKMPRPKGQHSAPRGGPPRSWTNTELTEALQ
HVWNKKMTTSQASRIFGIPYNSLLMYVRGKYGKSLKLEQLRKDCISGPPI
EMLQMGIGGGSGGSTKNEKSKERKEKEKDKNSMSSNGSGGSANSQGGAPT
SGSGPMQHSGELGPMGQLDLDLGLPLGPPGGPRSNSSEPDLLSAPNALFN
PFNPQGFYPDFSGGFPGLPLSMLNLLPPAERHHAAAAMHHLGVSMDEDCK
SVGSKQSSSVDEDYSGPGIPLSLEHRREISATGPPLTPSNGGTGHD*

BS04405.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:36:33
Subject Length Description Subject Range Query Range Score Percent Strand
lov-PF 1046 CG16778-PF 1..1046 1..1046 5551 100 Plus
lov-PE 1143 CG16778-PE 1..1046 1..1046 5551 100 Plus
lov-PD 1046 CG16778-PD 1..1046 1..1046 5551 100 Plus
lov-PC 1046 CG16778-PC 1..1046 1..1046 5551 100 Plus
lov-PB 1046 CG16778-PB 1..1046 1..1046 5551 100 Plus