Clone Sequence Records
BS04406.3prime Sequence
884 bp (801 high quality bases) assembled on 2005-12-01
> BS04406.3prime
ATGGTCTAGAAAGCTTTTAACCCACAGTCAGGGCCATGATGGCATTGACC
ACATCGTTGTCGTTCTTCAGCAGCGCCTGGATCGCCTTTTTGCGCGAGCA
CGCGGCCTGCATCTGTACCAGTTCGATGTCCTTCGCATGTAGGCCCATGG
CATCCGCGTCCTCGCCATCGTTCTCGTCGTCGTCGTCGTCGTGTGGGGAC
TCCTCGCCAGGGGCTTTTCCATCCTCGTTACCTTGCCGCCCGGCAGGCGA
GGTTCCACGGAATCGCTCGGCCGCCTTGACAGCTGCCTGGGAGGCGACGG
ACGTGGTGCTAGTGTCCTCCACGCAGATCTCCCCAAAGAAGATGTACGTC
GACGAGTGCGCCACTCTGTAGACGTCCGGCTGATCGATGTACAAGAGGAT
GTTCTTGCCCTTCTTCATGGTCACTCGGGCCACGTTCTCCATGGGCTTCA
GGTCCAGCTTCATGAGGATCCGGCGTGCCTTCCGCTCGCCGCGAGACTGC
TTTGATACCTCACGTGTTCGCACGGCCACCGTACCGAGTTGACCCTGCTC
GTCCGGTTGGGTCTCCTTGGGATCCGCTTCCACGAGATCCGGGGCGTCAT
CGGAGTCCGTGCTCTGATCATCCTCAACTACGCAGGATTTCGCGGCGGAG
GCGCCCTCCTCCTTCTGCGAGTTCGGCAGACTGAACACATTGGGCGGCAG
CTGTTTGGCCAGGCTCATCAGCTTCTTGATCTTGTTGCGGTAGGCCGGGT
CCATTTGACCCATGATGTGGGGCTTCCCCTTTGCGCCACTAAAGCCTGCC
GGAGGTTTATTCTTGACATCCAAGGCGTCTTCCGAACTGGAGATCTCCTT
CTGAAGTGCCTTTGCGACGTTTGGTTTTTGCGTT
BS04406.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:47:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4415-PA | 1044 | CG4415-RA | 177..1044 | 884..17 | 4340 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:37:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4415-RB | 1288 | CG4415-RB | 310..1177 | 884..17 | 4340 | 100 | Minus |
| CG4415-RA | 1368 | CG4415-RA | 310..1177 | 884..17 | 4340 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:36:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1037555..1038422 | 884..17 | 4340 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 14:37:00 has no hits.
BS04406.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:47:29 Download gff for
BS04406.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4415-PA | 177..1044 | 17..884 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:08:39 Download gff for
BS04406.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4415-PA | 177..1044 | 17..884 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:19:34 Download gff for
BS04406.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4415-RA | 310..1177 | 17..884 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:37:18 Download gff for
BS04406.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4415-RA | 310..1177 | 17..884 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:37:18 Download gff for
BS04406.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1037555..1038422 | 17..884 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:19:34 Download gff for
BS04406.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1037555..1038422 | 17..884 | 100 | | Minus |
BS04406.5prime Sequence
833 bp (780 high quality bases) assembled on 2005-12-01
> BS04406.5prime
GAAGTTATCAGTCGACATGGGTAAGAAGCAGAAAATGAAGAAGGCTGCCC
AGATGGCGACCGCTGCCGAGAAATTGAAGACCGCTGCCGAGAAATCGAAG
ACCGCTGCCGACAACGTGGTGGCCAAAGAAAAGCCTGCCGAAGAAGCCTC
TCCCTCACCAAGTGGCAGTGGAAAAAAAGGGAAGCCCAAGGCAACGCAAA
AACCAAACGTCGCAAAGGCACTTCAGAAGGAGATCTCCAGTTCGGAAGAC
GCCTTGGATGTCAAGAATAAACCTCCGGCAGGCTTTAGTGGCGCAAAGGG
GAAGCCCCACATCATGGGTCAAATGGACCCGGCCTACCGCAACAAGATCA
AGAAGCTGATGAGCCTGGCCAAACAGCTGCCGCCCAATGTGTTCAGTCTG
CCGAACTCGCAGAAGGAGGAGGGCGCCTCCGCCGCGAAATCCTGCGTAGT
TGAGGATGATCAGAGCACGGACTCCGATGACGCCCCGGATCTCGTGGAAG
CGGATCCCAAGGAGACCCAACCGGACGAGCAGGGTCAACTCGGTACGGTG
GCCGTGCGAACACGTGAGGTATCAAAGCAGTCTCGCGGCGAGCGGAAGGC
ACGCCGGATCCTCATGAAGCTGGACCTGAAGCCCATGGAGAACGTGGCCC
GAGTGACCATGAAGAAGGGCAAGAACATCCTCTTGTACATCGATCAGCCG
GACGTCTACAGAGTGGCGCACTCGTCGACGTACATCTTCTTTGGGGAGAT
CTGCGTGGGAGGACACTAGCACCACGTCCGTCGCCTCCCAGGCAGCTGTC
AAGGCGGCCGAGCGATTCCGTGGAACCTCGCCT
BS04406.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:47:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4415-PA | 1044 | CG4415-RA | 1..742 | 17..758 | 3710 | 100 | Plus |
| CG4415-PA | 1044 | CG4415-RA | 741..816 | 758..833 | 380 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:44:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4415-RB | 1288 | CG4415-RB | 134..949 | 17..833 | 4060 | 99.9 | Plus |
| CG4415-RA | 1368 | CG4415-RA | 134..949 | 17..833 | 4060 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:44:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1037379..1038194 | 17..833 | 4035 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-04 03:44:04 has no hits.
BS04406.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:47:30 Download gff for
BS04406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4415-PA | 1..816 | 17..833 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:08:41 Download gff for
BS04406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4415-PA | 1..816 | 17..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 05:03:27 Download gff for
BS04406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4415-RA | 126..949 | 8..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:46:18 Download gff for
BS04406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4415-RA | 126..949 | 8..833 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:46:18 Download gff for
BS04406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1037371..1038194 | 8..833 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 05:03:27 Download gff for
BS04406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1037371..1038194 | 8..833 | 99 | | Plus |
BS04406.complete Sequence
1076 bp (1076 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ634929
> BS04406.complete
GAAGTTATCAGTCGACATGGGTAAGAAGCAGAAAATGAAGAAGGCTGCCC
AGATGGCGACCGCTGCCGAGAAATTGAAGACCGCTGCCGAGAAATCGAAG
ACCGCTGCCGACAACGTGGTGGCCAAAGAAAAGCCTGCCGAAGAAGCCTC
TCCCTCACCAAGTGGCAGTGGAAAAAAAGGGAAGCCCAAGGCAACGCAAA
AACCAAACGTCGCAAAGGCACTTCAGAAGGAGATCTCCAGTTCGGAAGAC
GCCTTGGATGTCAAGAATAAACCTCCGGCAGGCTTTAGTGGCGCAAAGGG
GAAGCCCCACATCATGGGTCAAATGGACCCGGCCTACCGCAACAAGATCA
AGAAGCTGATGAGCCTGGCCAAACAGCTGCCGCCCAATGTGTTCAGTCTG
CCGAACTCGCAGAAGGAGGAGGGCGCCTCCGCCGCGAAATCCTGCGTAGT
TGAGGATGATCAGAGCACGGACTCCGATGACGCCCCGGATCTCGTGGAAG
CGGATCCCAAGGAGACCCAACCGGACGAGCAGGGTCAACTCGGTACGGTG
GCCGTGCGAACACGTGAGGTATCAAAGCAGTCTCGCGGCGAGCGGAAGGC
ACGCCGGATCCTCATGAAGCTGGACCTGAAGCCCATGGAGAACGTGGCCC
GAGTGACCATGAAGAAGGGCAAGAACATCCTCTTGTACATCGATCAGCCG
GACGTCTACAGAGTGGCGCACTCGTCGACGTACATCTTCTTTGGGGAGAT
CTGCGTGGAGGACACTAGCACCACGTCCGTCGCCTCCCAGGCAGCTGTCA
AGGCGGCCGAGCGATTCCGTGGAACCTCGCCTGCCGGGCGGCAAGGTAAC
GAGGATGGAAAAGCCCCTGGCGAGGAGTCCCCACACGACGACGACGACGA
CGAGAACGATGGCGAGGACGCGGATGCCATGGGCCTACATGCGAAGGACA
TCGAACTGGTACAGATGCAGGCCGCGTGCTCGCGCAAAAAGGCGATCCAG
GCGCTGCTGAAGAACGACAACGATGTGGTCAATGCCATCATGGCCCTGAC
TGTGGGTTAAAAGCTTTCTAGACCAT
BS04406.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:32:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4415-RB | 1044 | CG4415-PB | 1..1044 | 17..1060 | 5220 | 100 | Plus |
| CG4415-RA | 1044 | CG4415-PA | 1..1044 | 17..1060 | 5220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:32:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4415-RB | 1288 | CG4415-RB | 134..1177 | 17..1060 | 5220 | 100 | Plus |
| CG4415-RA | 1368 | CG4415-RA | 134..1177 | 17..1060 | 5220 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:32:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1037379..1038422 | 17..1060 | 5220 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:32:01 has no hits.
BS04406.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:32:32 Download gff for
BS04406.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4415-RA | 1..1044 | 17..1060 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:16:44 Download gff for
BS04406.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4415-RA | 137..1188 | 8..1060 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:22 Download gff for
BS04406.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4415-RA | 134..1175 | 17..1058 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:32:32 Download gff for
BS04406.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4415-RA | 137..1188 | 8..1060 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:20:39 Download gff for
BS04406.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4415-RA | 134..1175 | 17..1058 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:20:39 Download gff for
BS04406.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1037379..1038420 | 17..1058 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:22 Download gff for
BS04406.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1037379..1038420 | 17..1058 | 100 | | Plus |
BS04406.pep Sequence
Translation from 16 to 1059
> BS04406.pep
MGKKQKMKKAAQMATAAEKLKTAAEKSKTAADNVVAKEKPAEEASPSPSG
SGKKGKPKATQKPNVAKALQKEISSSEDALDVKNKPPAGFSGAKGKPHIM
GQMDPAYRNKIKKLMSLAKQLPPNVFSLPNSQKEEGASAAKSCVVEDDQS
TDSDDAPDLVEADPKETQPDEQGQLGTVAVRTREVSKQSRGERKARRILM
KLDLKPMENVARVTMKKGKNILLYIDQPDVYRVAHSSTYIFFGEICVEDT
STTSVASQAAVKAAERFRGTSPAGRQGNEDGKAPGEESPHDDDDDENDGE
DADAMGLHAKDIELVQMQAACSRKKAIQALLKNDNDVVNAIMALTVG*
BS04406.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:07:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4415-PB | 347 | CG4415-PB | 1..347 | 1..347 | 1752 | 100 | Plus |
| CG4415-PA | 347 | CG4415-PA | 1..347 | 1..347 | 1752 | 100 | Plus |
| Nacalpha-PD | 217 | CG8759-PD | 26..216 | 145..346 | 350 | 45.1 | Plus |
| Nacalpha-PA | 217 | CG8759-PA | 26..216 | 145..346 | 350 | 45.1 | Plus |
| Nacalpha-PC | 217 | CG8759-PC | 26..216 | 145..346 | 350 | 45.1 | Plus |
