Clone BS04407 Report

Search the DGRC for BS04407

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:44
Well:7
Vector:pDNR-Dual
Associated Gene/TranscriptCG31388-RA
Protein status:BS04407.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04407.3prime Sequence

911 bp (841 high quality bases) assembled on 2005-12-01

> BS04407.3prime
ATGGTCTAGAAAGCTTTCAATTCGTTGAACAATTTCTTCCACGGGAATTG
GGGGATGCAGCAGCTTTAGCACGCGCCTCCAGAGTTTTGTGGGCATTGGA
CTTCAGATGGGATCTGTAGTGTTTGGCTGTCTTGAAGCTTATGCGGCAGA
TTTCGCAGCCGTGATCGCGAGTCAAGTTGTGATACTTTTGATGTGTCCTG
CACTCGCTGGGTGTTACATACGACTTGGGGCAGTACTCGCACTGGTAGAT
ACGCTTGCTGGCGTCCATGTGAACCCTTTCATGCATGCTGCGGGCGCTGC
AAAAGCGAAAGGTTTTGCCACAGTTGTAGCGACAGATGTAGGGACGCTCG
GTTGTGTGGGTTTTCTGATGGGAACAGAGTTCGGCGGCTGTATAAAAGGA
TGCGCTGCACTGGTCGCATTTGTGGCGTCGTGTGCCCGCGTGGCGAACCA
GGTGATTCTTCAGATTAAAGGCCGTGGTCAGATGCTTGCCACATATGTGG
CACACATGCTGGGACGCCGGCGGCCTGAGACACCGCTGTTTGTGAGTCTC
CAGCAGAATGTGATTGTGGAATTGGCTCTTGCACTTGGTGCAGGAGTGCG
TCAATGGAAGATTAATCATGTTGCAGTGCCGCGTAAGTGCGGCTGCTGAT
CGGAAGCCCTCGTCACAGTGGTCACAGACGAATTTGGTATCTGGCGGGAT
GTCGTGCAGATGGTATTTGTGCAGCTTCAGTTCGTCCACGTTTTCGAATT
CGAGGCCACACTTGCTGCACGTGTGGCTGGAGGAAGTGTCCCGATTATCG
ATAGCTTCACTTTCGGGTTCTGATTCGGGAGAGAGGCCCATGTCNAAGTG
CTCATTCGACAACTGGCTATCTGTTGAAAGTTCTGGAGAAGATTGCGGAC
TGGCCACTGAC

BS04407.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:47:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG31388-PA 1341 CG31388-RA 447..1341 911..17 4456 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:20:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG31388-RA 1472 CG31388-RA 501..1396 911..16 4469 99.9 Minus
CG31388-RB 1562 CG31388-RB 818..1486 684..16 3345 100 Minus
CG31388-RB 1562 CG31388-RB 501..729 911..683 1134 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:20:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11239110..11239434 599..275 1625 100 Minus
3R 32079331 3R 11238382..11238609 911..684 1129 99.6 Minus
3R 32079331 3R 11239895..11240038 159..16 720 100 Minus
3R 32079331 3R 11239509..11239627 277..159 595 100 Minus
3R 32079331 3R 11238957..11239041 683..599 425 100 Minus
Blast to na_te.dros performed on 2015-02-11 23:20:48 has no hits.

BS04407.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:47:31 Download gff for BS04407.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31388-PA 447..1341 17..911 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:08:42 Download gff for BS04407.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31388-PA 447..1341 17..911 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:59:28 Download gff for BS04407.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31388-RA 501..1402 10..911 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:54:12 Download gff for BS04407.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31388-RA 501..1402 10..911 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:54:12 Download gff for BS04407.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 11238382..11238609 684..911 99 -> Minus
3R 11238957..11239041 599..683 100 -> Minus
3R 11239111..11239433 276..598 100 -> Minus
3R 11239511..11239627 159..275 100 -> Minus
3R 11239896..11240041 13..158 98 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:59:28 Download gff for BS04407.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7064104..7064331 684..911 99 -> Minus
arm_3R 7064679..7064763 599..683 100 -> Minus
arm_3R 7064833..7065155 276..598 100 -> Minus
arm_3R 7065233..7065349 159..275 100 -> Minus
arm_3R 7065618..7065763 13..158 98 -> Minus

BS04407.5prime Sequence

871 bp (792 high quality bases) assembled on 2005-12-01

> BS04407.5prime
GAAGTTATCAGTCGACATGAGGTACATTTGCAGGACCTGTTCTCGTATGG
CTGATCCTGCGGTAGCCAAGAATCTCTTCGATCCATCGAGTTCTTCCGTT
TTGCGTCAAATAGAGACTCTAACTAACTTGCAGCTAAAAGAGGACGGCAA
GTTGCCCAGGTTCATGTGCCAGGACTGCCAGCACGACCTGCAGATTGCCA
TCGATTTCCGCCGCGTTTGCATCGAGGCCCAGGAGCTCCTTGAACTTCAG
CTAAGGCAGGTGGAAAAGGAGGAGGAGGCGTTCGAGAGCCTGGCGGAGCA
ATGGCTGGATGATTGTCCGGATGAGTTGTCCAACTTGTCGCCAGTGCTAC
AGCTGAATGATCGCATGGATTTTATCTTCGATCCCGAGCCACAGGATAAG
AATACGGATGAGTTGGCTTCCATAAAGACCACGACAACAACAGAGTATAT
GAATGCATACCAGTCAGTGGCCAGTCCGCAATCTTCTCCAGAACTTTCAA
CAGATAGCCAGTTGTCGAATGAGCACTTTGACATGGGCCTCTCTCCCGAA
TCAGAACCCGAAAGTGAAGCTATCGATAATCGGGACACTTCCTCCAGCCA
CACGTGCAGCAAGTGTGGCCTCGAATTCGAAAACGTGGACGAACTGAAGC
TGCACAAATACCATCTGCACGACATCCCGCCAGATACCAAATTCGTCTGT
GACCACTGTGACGAGGGCTTCCGATCAGCAGCCGCACTTACGCGGCACTG
CAACATGATTAATCTTCCATTGACGCACTCCTGCACCAAGTGCAAGAGCC
AATTCCACAATCACATTCTGCTGGAGACTCACAAACAGCGGTGTCTCAGG
CCGCCGGCCGTCCAGCATGTG

BS04407.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:47:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG31388-PA 1341 CG31388-RA 1..842 17..858 4210 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 01:54:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG31388-RA 1472 CG31388-RA 54..909 16..871 4235 99.8 Plus
CG31388-RB 1562 CG31388-RB 54..729 16..691 3380 100 Plus
CG31388-RB 1562 CG31388-RB 818..999 690..871 865 98.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 01:54:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11238047..11238609 128..690 2815 100 Plus
3R 32079331 3R 11237868..11237985 16..133 590 100 Plus
3R 32079331 3R 11239110..11239206 775..871 440 96.9 Plus
3R 32079331 3R 11238957..11239041 691..775 425 100 Plus
Blast to na_te.dros performed on 2015-02-10 01:54:35 has no hits.

BS04407.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:47:32 Download gff for BS04407.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31388-PA 1..855 17..871 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:08:44 Download gff for BS04407.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31388-PA 1..855 17..871 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:38:46 Download gff for BS04407.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31388-RA 51..909 10..871 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:04:06 Download gff for BS04407.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31388-RA 51..909 10..871 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:04:06 Download gff for BS04407.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 11237865..11237985 10..133 97 -> Plus
3R 11238053..11238609 134..690 100 -> Plus
3R 11238957..11239041 691..775 100 -> Plus
3R 11239111..11239206 776..871 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:38:46 Download gff for BS04407.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7063587..7063707 10..133 97 -> Plus
arm_3R 7063775..7064331 134..690 100 -> Plus
arm_3R 7064679..7064763 691..775 100 -> Plus
arm_3R 7064833..7064928 776..871 97   Plus

BS04407.complete Sequence

1373 bp (1373 high quality bases) assembled on 2005-09-13

GenBank Submission: FJ634930

> BS04407.complete
GAAGTTATCAGTCGACATGAGGTACATTTGCAGGACCTGTTCTCGTATGG
CTGATCCTGCGGTAGCCAAGAATCTCTTCGATCCATCGAGTTCTTCCGTT
TTGCGTCAAATAGAGACTCTAACTAACTTGCAGCTAAAAGAGGACGGCAA
GTTGCCCAGGTTCATGTGCCAGGACTGCCAGCACGACCTGCAGATTGCCA
TCGATTTCCGCCGCGTTTGCATCGAGGCCCAGGAGCTCCTTGAACTTCAG
CTAAGGCAGGTGGAAAAGGAGGAGGAGGCGTTCGAGAGCCTGGCGGAGCA
ATGGCTGGATGATTGTCCGGATGAGTTGTCCAACTTGTCGCCAGTGCTAC
AGCTGAATGATCGCATGGATTTTATCTTCGATCCCGAGCCACAGGATAAG
AATACGGATGAGTTGGCTTCCATAAAGACCACGACAACAACAGAGTATAT
GAATGCATACCAGTCAGTGGCCAGTCCGCAATCTTCTCCAGAACTTTCAA
CAGATAGCCAGTTGTCGAATGAGCACTTTGACATGGGCCTCTCTCCCGAA
TCAGAACCCGAAAGTGAAGCTATCGATAATCGGGACACTTCCTCCAGCCA
CACGTGCAGCAAGTGTGGCCTCGAATTCGAAAACGTGGACGAACTGAAGC
TGCACAAATACCATCTGCACGACATCCCGCCAGATACCAAATTCGTCTGT
GACCACTGTGACGAGGGCTTCCGATCAGCAGCCGCACTTACGCGGCACTG
CAACATGATTAATCTTCCATTGACGCACTCCTGCACCAAGTGCAAGAGCC
AATTCCACAATCACATTCTGCTGGAGACTCACAAACAGCGGTGTCTCAGG
CCGCCGGCGTCCCAGCATGTGTGCCACATATGTGGCAAGCATCTGACCAC
GGCCTTTAATCTGAAGAATCACCTGGTTCGCCACGCGGGCACACGACGCC
ACAAATGCGACCAGTGCAGCGCATCCTTTTATACAGCCGCCGAACTCTGT
TCCCATCAGAAAACCCACACAACCGAGCGTCCCTACATCTGTCGCTACAA
CTGTGGCAAAACCTTTCGCTTTTGCAGCGCCCGCAGCATGCATGAAAGGG
TTCACATGGACGCCAGCAAGCGTATCTACCAGTGCGAGTACTGCCCCAAG
TCGTATGTAACACCCAGCGAGTGCAGGACACATCAAAAGTATCACAACTT
GACTCGCGATCACGGCTGCGAAATCTGCCGCATAAGCTTCAAGACAGCCA
AACACTACAGATCCCATCTGAAGTCCAATGCCCACAAAACTCTGGAGGCG
CGTGCTAAAGCTGCTGCATCCCCCAATTCCCGTGGAAGAAATTGTTCAAC
GAATTGAAAGCTTTCTAGACCAT

BS04407.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:47:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG31388-RA 1341 CG31388-PA 1..1341 17..1357 6705 100 Plus
CG31388-RB 741 CG31388-PB 1..675 17..691 3375 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:47:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG31388-RA 1472 CG31388-RA 54..1396 16..1358 6715 100 Plus
CG31388-RB 1562 CG31388-RB 54..729 16..691 3380 100 Plus
CG31388-RB 1562 CG31388-RB 818..1486 690..1358 3345 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:47:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11238047..11238609 128..690 2815 100 Plus
3R 32079331 3R 11239110..11239434 775..1099 1625 100 Plus
3R 32079331 3R 11239895..11240038 1215..1358 720 100 Plus
3R 32079331 3R 11239509..11239627 1097..1215 595 100 Plus
3R 32079331 3R 11237868..11237985 16..133 590 100 Plus
3R 32079331 3R 11238957..11239041 691..775 425 100 Plus
Blast to na_te.dros performed on 2014-11-28 07:47:45 has no hits.

BS04407.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:32:33 Download gff for BS04407.complete
Subject Subject Range Query Range Percent Splice Strand
CG31388-RA 1..1341 17..1357 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:45:25 Download gff for BS04407.complete
Subject Subject Range Query Range Percent Splice Strand
CG31388-RA 55..1394 17..1356 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:06 Download gff for BS04407.complete
Subject Subject Range Query Range Percent Splice Strand
CG31388-RA 55..1394 17..1356 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:32:33 Download gff for BS04407.complete
Subject Subject Range Query Range Percent Splice Strand
CG31388-RA 51..1402 10..1364 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:04:04 Download gff for BS04407.complete
Subject Subject Range Query Range Percent Splice Strand
CG31388-RA 55..1394 17..1356 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:04:04 Download gff for BS04407.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11239511..11239627 1099..1215 100 -> Plus
3R 11239896..11240036 1216..1356 100   Plus
3R 11239111..11239433 776..1098 100 -> Plus
3R 11237869..11237985 17..133 100 -> Plus
3R 11238053..11238609 134..690 100 -> Plus
3R 11238957..11239041 691..775 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:06 Download gff for BS04407.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7063591..7063707 17..133 100 -> Plus
arm_3R 7063775..7064331 134..690 100 -> Plus
arm_3R 7064679..7064763 691..775 100 -> Plus
arm_3R 7064833..7065155 776..1098 100 -> Plus
arm_3R 7065233..7065349 1099..1215 100 -> Plus
arm_3R 7065618..7065758 1216..1356 100   Plus

BS04407.pep Sequence

Translation from 16 to 1356

> BS04407.pep
MRYICRTCSRMADPAVAKNLFDPSSSSVLRQIETLTNLQLKEDGKLPRFM
CQDCQHDLQIAIDFRRVCIEAQELLELQLRQVEKEEEAFESLAEQWLDDC
PDELSNLSPVLQLNDRMDFIFDPEPQDKNTDELASIKTTTTTEYMNAYQS
VASPQSSPELSTDSQLSNEHFDMGLSPESEPESEAIDNRDTSSSHTCSKC
GLEFENVDELKLHKYHLHDIPPDTKFVCDHCDEGFRSAAALTRHCNMINL
PLTHSCTKCKSQFHNHILLETHKQRCLRPPASQHVCHICGKHLTTAFNLK
NHLVRHAGTRRHKCDQCSASFYTAAELCSHQKTHTTERPYICRYNCGKTF
RFCSARSMHERVHMDASKRIYQCEYCPKSYVTPSECRTHQKYHNLTRDHG
CEICRISFKTAKHYRSHLKSNAHKTLEARAKAAASPNSRGRNCSTN*

BS04407.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:17:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG31388-PA 446 CG31388-PA 1..446 1..446 2431 100 Plus
CG31388-PB 246 CG31388-PB 1..227 1..227 1182 99.1 Plus
CG8319-PA 383 CG8319-PA 1..368 1..417 322 24.6 Plus
CG6689-PA 613 CG6689-PA 167..598 5..424 302 24.9 Plus
Meics-PB 571 CG8474-PB 21..422 5..417 300 24.9 Plus