Clone Sequence Records
BS04407.3prime Sequence
911 bp (841 high quality bases) assembled on 2005-12-01
> BS04407.3prime
ATGGTCTAGAAAGCTTTCAATTCGTTGAACAATTTCTTCCACGGGAATTG
GGGGATGCAGCAGCTTTAGCACGCGCCTCCAGAGTTTTGTGGGCATTGGA
CTTCAGATGGGATCTGTAGTGTTTGGCTGTCTTGAAGCTTATGCGGCAGA
TTTCGCAGCCGTGATCGCGAGTCAAGTTGTGATACTTTTGATGTGTCCTG
CACTCGCTGGGTGTTACATACGACTTGGGGCAGTACTCGCACTGGTAGAT
ACGCTTGCTGGCGTCCATGTGAACCCTTTCATGCATGCTGCGGGCGCTGC
AAAAGCGAAAGGTTTTGCCACAGTTGTAGCGACAGATGTAGGGACGCTCG
GTTGTGTGGGTTTTCTGATGGGAACAGAGTTCGGCGGCTGTATAAAAGGA
TGCGCTGCACTGGTCGCATTTGTGGCGTCGTGTGCCCGCGTGGCGAACCA
GGTGATTCTTCAGATTAAAGGCCGTGGTCAGATGCTTGCCACATATGTGG
CACACATGCTGGGACGCCGGCGGCCTGAGACACCGCTGTTTGTGAGTCTC
CAGCAGAATGTGATTGTGGAATTGGCTCTTGCACTTGGTGCAGGAGTGCG
TCAATGGAAGATTAATCATGTTGCAGTGCCGCGTAAGTGCGGCTGCTGAT
CGGAAGCCCTCGTCACAGTGGTCACAGACGAATTTGGTATCTGGCGGGAT
GTCGTGCAGATGGTATTTGTGCAGCTTCAGTTCGTCCACGTTTTCGAATT
CGAGGCCACACTTGCTGCACGTGTGGCTGGAGGAAGTGTCCCGATTATCG
ATAGCTTCACTTTCGGGTTCTGATTCGGGAGAGAGGCCCATGTCNAAGTG
CTCATTCGACAACTGGCTATCTGTTGAAAGTTCTGGAGAAGATTGCGGAC
TGGCCACTGAC
BS04407.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:47:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31388-PA | 1341 | CG31388-RA | 447..1341 | 911..17 | 4456 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:20:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31388-RA | 1472 | CG31388-RA | 501..1396 | 911..16 | 4469 | 99.9 | Minus |
CG31388-RB | 1562 | CG31388-RB | 818..1486 | 684..16 | 3345 | 100 | Minus |
CG31388-RB | 1562 | CG31388-RB | 501..729 | 911..683 | 1134 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:20:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11239110..11239434 | 599..275 | 1625 | 100 | Minus |
3R | 32079331 | 3R | 11238382..11238609 | 911..684 | 1129 | 99.6 | Minus |
3R | 32079331 | 3R | 11239895..11240038 | 159..16 | 720 | 100 | Minus |
3R | 32079331 | 3R | 11239509..11239627 | 277..159 | 595 | 100 | Minus |
3R | 32079331 | 3R | 11238957..11239041 | 683..599 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:20:48 has no hits.
BS04407.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:47:31 Download gff for
BS04407.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31388-PA | 447..1341 | 17..911 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:08:42 Download gff for
BS04407.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31388-PA | 447..1341 | 17..911 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:59:28 Download gff for
BS04407.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31388-RA | 501..1402 | 10..911 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:54:12 Download gff for
BS04407.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31388-RA | 501..1402 | 10..911 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:54:12 Download gff for
BS04407.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11238382..11238609 | 684..911 | 99 | -> | Minus |
3R | 11238957..11239041 | 599..683 | 100 | -> | Minus |
3R | 11239111..11239433 | 276..598 | 100 | -> | Minus |
3R | 11239511..11239627 | 159..275 | 100 | -> | Minus |
3R | 11239896..11240041 | 13..158 | 98 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:59:28 Download gff for
BS04407.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7064104..7064331 | 684..911 | 99 | -> | Minus |
arm_3R | 7064679..7064763 | 599..683 | 100 | -> | Minus |
arm_3R | 7064833..7065155 | 276..598 | 100 | -> | Minus |
arm_3R | 7065233..7065349 | 159..275 | 100 | -> | Minus |
arm_3R | 7065618..7065763 | 13..158 | 98 | -> | Minus |
BS04407.5prime Sequence
871 bp (792 high quality bases) assembled on 2005-12-01
> BS04407.5prime
GAAGTTATCAGTCGACATGAGGTACATTTGCAGGACCTGTTCTCGTATGG
CTGATCCTGCGGTAGCCAAGAATCTCTTCGATCCATCGAGTTCTTCCGTT
TTGCGTCAAATAGAGACTCTAACTAACTTGCAGCTAAAAGAGGACGGCAA
GTTGCCCAGGTTCATGTGCCAGGACTGCCAGCACGACCTGCAGATTGCCA
TCGATTTCCGCCGCGTTTGCATCGAGGCCCAGGAGCTCCTTGAACTTCAG
CTAAGGCAGGTGGAAAAGGAGGAGGAGGCGTTCGAGAGCCTGGCGGAGCA
ATGGCTGGATGATTGTCCGGATGAGTTGTCCAACTTGTCGCCAGTGCTAC
AGCTGAATGATCGCATGGATTTTATCTTCGATCCCGAGCCACAGGATAAG
AATACGGATGAGTTGGCTTCCATAAAGACCACGACAACAACAGAGTATAT
GAATGCATACCAGTCAGTGGCCAGTCCGCAATCTTCTCCAGAACTTTCAA
CAGATAGCCAGTTGTCGAATGAGCACTTTGACATGGGCCTCTCTCCCGAA
TCAGAACCCGAAAGTGAAGCTATCGATAATCGGGACACTTCCTCCAGCCA
CACGTGCAGCAAGTGTGGCCTCGAATTCGAAAACGTGGACGAACTGAAGC
TGCACAAATACCATCTGCACGACATCCCGCCAGATACCAAATTCGTCTGT
GACCACTGTGACGAGGGCTTCCGATCAGCAGCCGCACTTACGCGGCACTG
CAACATGATTAATCTTCCATTGACGCACTCCTGCACCAAGTGCAAGAGCC
AATTCCACAATCACATTCTGCTGGAGACTCACAAACAGCGGTGTCTCAGG
CCGCCGGCCGTCCAGCATGTG
BS04407.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:47:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31388-PA | 1341 | CG31388-RA | 1..842 | 17..858 | 4210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 01:54:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31388-RA | 1472 | CG31388-RA | 54..909 | 16..871 | 4235 | 99.8 | Plus |
CG31388-RB | 1562 | CG31388-RB | 54..729 | 16..691 | 3380 | 100 | Plus |
CG31388-RB | 1562 | CG31388-RB | 818..999 | 690..871 | 865 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 01:54:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11238047..11238609 | 128..690 | 2815 | 100 | Plus |
3R | 32079331 | 3R | 11237868..11237985 | 16..133 | 590 | 100 | Plus |
3R | 32079331 | 3R | 11239110..11239206 | 775..871 | 440 | 96.9 | Plus |
3R | 32079331 | 3R | 11238957..11239041 | 691..775 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 01:54:35 has no hits.
BS04407.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:47:32 Download gff for
BS04407.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31388-PA | 1..855 | 17..871 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:08:44 Download gff for
BS04407.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31388-PA | 1..855 | 17..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:38:46 Download gff for
BS04407.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31388-RA | 51..909 | 10..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:04:06 Download gff for
BS04407.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31388-RA | 51..909 | 10..871 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:04:06 Download gff for
BS04407.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11237865..11237985 | 10..133 | 97 | -> | Plus |
3R | 11238053..11238609 | 134..690 | 100 | -> | Plus |
3R | 11238957..11239041 | 691..775 | 100 | -> | Plus |
3R | 11239111..11239206 | 776..871 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:38:46 Download gff for
BS04407.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7063587..7063707 | 10..133 | 97 | -> | Plus |
arm_3R | 7063775..7064331 | 134..690 | 100 | -> | Plus |
arm_3R | 7064679..7064763 | 691..775 | 100 | -> | Plus |
arm_3R | 7064833..7064928 | 776..871 | 97 | | Plus |
BS04407.complete Sequence
1373 bp (1373 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ634930
> BS04407.complete
GAAGTTATCAGTCGACATGAGGTACATTTGCAGGACCTGTTCTCGTATGG
CTGATCCTGCGGTAGCCAAGAATCTCTTCGATCCATCGAGTTCTTCCGTT
TTGCGTCAAATAGAGACTCTAACTAACTTGCAGCTAAAAGAGGACGGCAA
GTTGCCCAGGTTCATGTGCCAGGACTGCCAGCACGACCTGCAGATTGCCA
TCGATTTCCGCCGCGTTTGCATCGAGGCCCAGGAGCTCCTTGAACTTCAG
CTAAGGCAGGTGGAAAAGGAGGAGGAGGCGTTCGAGAGCCTGGCGGAGCA
ATGGCTGGATGATTGTCCGGATGAGTTGTCCAACTTGTCGCCAGTGCTAC
AGCTGAATGATCGCATGGATTTTATCTTCGATCCCGAGCCACAGGATAAG
AATACGGATGAGTTGGCTTCCATAAAGACCACGACAACAACAGAGTATAT
GAATGCATACCAGTCAGTGGCCAGTCCGCAATCTTCTCCAGAACTTTCAA
CAGATAGCCAGTTGTCGAATGAGCACTTTGACATGGGCCTCTCTCCCGAA
TCAGAACCCGAAAGTGAAGCTATCGATAATCGGGACACTTCCTCCAGCCA
CACGTGCAGCAAGTGTGGCCTCGAATTCGAAAACGTGGACGAACTGAAGC
TGCACAAATACCATCTGCACGACATCCCGCCAGATACCAAATTCGTCTGT
GACCACTGTGACGAGGGCTTCCGATCAGCAGCCGCACTTACGCGGCACTG
CAACATGATTAATCTTCCATTGACGCACTCCTGCACCAAGTGCAAGAGCC
AATTCCACAATCACATTCTGCTGGAGACTCACAAACAGCGGTGTCTCAGG
CCGCCGGCGTCCCAGCATGTGTGCCACATATGTGGCAAGCATCTGACCAC
GGCCTTTAATCTGAAGAATCACCTGGTTCGCCACGCGGGCACACGACGCC
ACAAATGCGACCAGTGCAGCGCATCCTTTTATACAGCCGCCGAACTCTGT
TCCCATCAGAAAACCCACACAACCGAGCGTCCCTACATCTGTCGCTACAA
CTGTGGCAAAACCTTTCGCTTTTGCAGCGCCCGCAGCATGCATGAAAGGG
TTCACATGGACGCCAGCAAGCGTATCTACCAGTGCGAGTACTGCCCCAAG
TCGTATGTAACACCCAGCGAGTGCAGGACACATCAAAAGTATCACAACTT
GACTCGCGATCACGGCTGCGAAATCTGCCGCATAAGCTTCAAGACAGCCA
AACACTACAGATCCCATCTGAAGTCCAATGCCCACAAAACTCTGGAGGCG
CGTGCTAAAGCTGCTGCATCCCCCAATTCCCGTGGAAGAAATTGTTCAAC
GAATTGAAAGCTTTCTAGACCAT
BS04407.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:47:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31388-RA | 1341 | CG31388-PA | 1..1341 | 17..1357 | 6705 | 100 | Plus |
CG31388-RB | 741 | CG31388-PB | 1..675 | 17..691 | 3375 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:47:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31388-RA | 1472 | CG31388-RA | 54..1396 | 16..1358 | 6715 | 100 | Plus |
CG31388-RB | 1562 | CG31388-RB | 54..729 | 16..691 | 3380 | 100 | Plus |
CG31388-RB | 1562 | CG31388-RB | 818..1486 | 690..1358 | 3345 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:47:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11238047..11238609 | 128..690 | 2815 | 100 | Plus |
3R | 32079331 | 3R | 11239110..11239434 | 775..1099 | 1625 | 100 | Plus |
3R | 32079331 | 3R | 11239895..11240038 | 1215..1358 | 720 | 100 | Plus |
3R | 32079331 | 3R | 11239509..11239627 | 1097..1215 | 595 | 100 | Plus |
3R | 32079331 | 3R | 11237868..11237985 | 16..133 | 590 | 100 | Plus |
3R | 32079331 | 3R | 11238957..11239041 | 691..775 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 07:47:45 has no hits.
BS04407.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:32:33 Download gff for
BS04407.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31388-RA | 1..1341 | 17..1357 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:45:25 Download gff for
BS04407.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31388-RA | 55..1394 | 17..1356 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:06 Download gff for
BS04407.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31388-RA | 55..1394 | 17..1356 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:32:33 Download gff for
BS04407.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31388-RA | 51..1402 | 10..1364 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:04:04 Download gff for
BS04407.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31388-RA | 55..1394 | 17..1356 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:04:04 Download gff for
BS04407.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11239511..11239627 | 1099..1215 | 100 | -> | Plus |
3R | 11239896..11240036 | 1216..1356 | 100 | | Plus |
3R | 11239111..11239433 | 776..1098 | 100 | -> | Plus |
3R | 11237869..11237985 | 17..133 | 100 | -> | Plus |
3R | 11238053..11238609 | 134..690 | 100 | -> | Plus |
3R | 11238957..11239041 | 691..775 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:06 Download gff for
BS04407.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7063591..7063707 | 17..133 | 100 | -> | Plus |
arm_3R | 7063775..7064331 | 134..690 | 100 | -> | Plus |
arm_3R | 7064679..7064763 | 691..775 | 100 | -> | Plus |
arm_3R | 7064833..7065155 | 776..1098 | 100 | -> | Plus |
arm_3R | 7065233..7065349 | 1099..1215 | 100 | -> | Plus |
arm_3R | 7065618..7065758 | 1216..1356 | 100 | | Plus |
BS04407.pep Sequence
Translation from 16 to 1356
> BS04407.pep
MRYICRTCSRMADPAVAKNLFDPSSSSVLRQIETLTNLQLKEDGKLPRFM
CQDCQHDLQIAIDFRRVCIEAQELLELQLRQVEKEEEAFESLAEQWLDDC
PDELSNLSPVLQLNDRMDFIFDPEPQDKNTDELASIKTTTTTEYMNAYQS
VASPQSSPELSTDSQLSNEHFDMGLSPESEPESEAIDNRDTSSSHTCSKC
GLEFENVDELKLHKYHLHDIPPDTKFVCDHCDEGFRSAAALTRHCNMINL
PLTHSCTKCKSQFHNHILLETHKQRCLRPPASQHVCHICGKHLTTAFNLK
NHLVRHAGTRRHKCDQCSASFYTAAELCSHQKTHTTERPYICRYNCGKTF
RFCSARSMHERVHMDASKRIYQCEYCPKSYVTPSECRTHQKYHNLTRDHG
CEICRISFKTAKHYRSHLKSNAHKTLEARAKAAASPNSRGRNCSTN*
BS04407.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:17:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31388-PA | 446 | CG31388-PA | 1..446 | 1..446 | 2431 | 100 | Plus |
CG31388-PB | 246 | CG31388-PB | 1..227 | 1..227 | 1182 | 99.1 | Plus |
CG8319-PA | 383 | CG8319-PA | 1..368 | 1..417 | 322 | 24.6 | Plus |
CG6689-PA | 613 | CG6689-PA | 167..598 | 5..424 | 302 | 24.9 | Plus |
Meics-PB | 571 | CG8474-PB | 21..422 | 5..417 | 300 | 24.9 | Plus |