Clone Sequence Records
BS04408.3prime Sequence
848 bp (784 high quality bases) assembled on 2005-12-01
> BS04408.3prime
ATGGTCTAGAAAGCTTTCAAAACACCTTGGCTATGAAGGTCTCCGAGAGT
CTTTGCTGCTGCTGATGGTGTTGCTGGCTTTGCGGATGTGGCTGCTGCGG
CTGGAGTTGCAAGAAGGCGGAGCCACTGGGATAATCGTGAGGTGGAGCCA
CTCCGAGCTGGTGATGGAAGCCACCGGGCGGATACTGCGAAACGGCGGAC
CTGGGCCAGGCGGGATTACTCGTCTCGCCGCTGGAAAGTGGCGGTGTGGT
GACATTGATGGGCGGCGACATGCTGCCGGAACTGGAGTCCGGCGTGAGTT
GACCCGATGCCTGGCCGTAACCGGAGGCAAGTGGCTCCCTGCGCGTGTAC
TCGCGCCGCCTGTCGTAGGTGGGTGGCATGTCCAGGTCATCCAGATCGCC
GCCGATCTCGTGCAGCTTCCGCATGTGCTTCTTCAGATCGAAGTTCCGGC
AGAATCCCTTGGCGCAGACGCGGCAGGTGTAGGGCTTCTTGTCGTTGTGC
GTGTGCATGTGGAAGGTGAGGTTGTAGACCTGGTGGAAGGCCTTGTTGCA
GATGTTGCACTTGTAGGCCTTTTCGCCGCTGTGGGTCAGCTTGTGGTTCT
TGTAGTTGCCCTTCTGGTGGAACCCCTTGCCGCAGTACTCGCACACGAAG
GGCTTGTAGCCGGCGTGGATGCGCGAGTGGGTGTTGAGGGTGGAGGAGCG
ATTGAAGGCCTTGCCGCANGTCTGGCACTTGTGCGGCTTTTCCGACGTGT
GGATGATCTTGTGCCGGCAGAGAGTCGAAGCCTGGCGGAATCCCTTGCCG
CAGACCTTGCAAACAAACGGCCTGGCTCCGGTGTGGACGGGCATGTGG
BS04408.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:47:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31670-PA | 1836 | CG31670-RA | 1005..1836 | 848..17 | 4141 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:13:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
erm-RD | 2881 | CG31670-RD | 1233..2068 | 848..13 | 4154 | 99.8 | Minus |
erm-RC | 2881 | CG31670-RC | 1233..2068 | 848..13 | 4154 | 99.8 | Minus |
erm-RB | 3051 | CG31670-RB | 1403..2238 | 848..13 | 4154 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:13:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1951052..1951887 | 13..848 | 4154 | 99.8 | Plus |
Blast to na_te.dros performed 2015-02-12 19:13:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2454..2515 | 109..48 | 157 | 72.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6763..6820 | 110..53 | 155 | 74.1 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6799..6859 | 110..53 | 153 | 77 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6787 | 109..53 | 150 | 73.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6752..6808 | 109..53 | 150 | 73.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2363..2424 | 110..49 | 148 | 71 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2356 | 103..54 | 142 | 76 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2368 | 110..54 | 141 | 71.9 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2402..2464 | 110..54 | 139 | 74.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1513..1572 | 108..49 | 138 | 70 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6784..6845 | 110..49 | 130 | 67.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2798..2855 | 110..53 | 128 | 69 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6821..6876 | 109..54 | 127 | 69.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6766 | 97..53 | 126 | 75.6 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1100..1151 | 103..49 | 124 | 72.7 | Minus |
BS04408.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:47:33 Download gff for
BS04408.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31670-PA | 1005..1836 | 17..848 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:08:46 Download gff for
BS04408.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31670-PA | 1005..1836 | 17..848 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:09:09 Download gff for
BS04408.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
erm-RB | 1403..2245 | 7..848 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:39:36 Download gff for
BS04408.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
erm-RB | 1403..2245 | 7..848 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:39:36 Download gff for
BS04408.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1951045..1951887 | 7..848 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:09:09 Download gff for
BS04408.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1951045..1951887 | 7..848 | 99 | | Plus |
BS04408.5prime Sequence
889 bp (770 high quality bases) assembled on 2005-12-01
> BS04408.5prime
GAAGTTATCAGTCGACATGGTTTACTTTAGTCCGCGTGGCATGCAACCGT
GTAGTCCAGCGGGAGAAATCGCAATGATGCCGCCTTCGAAGAGCCCCGTG
ATGGAGAGCGCCGCCTCCGAACAGAATCCTGCCCAGCAGAGCCAGCAGCA
GGACGAGCAGAGCGCCAAGCGGGCGTGTCCCCTAAAGTTTTCGATAGCCA
AGATCATGGAGCCGGATCACAGGCCCAGCCAAGTGCCACCGCCGCAGCCC
GCTCCGGTTTCCTTCGCCACCAACGATGACGACGAGGATGAGGATCCGGA
GATCGATGCCGACTCGGAGCGCTCCTGCAGCCCCATCGAGGTGATCAGCC
TGGATCAGTCGCCATCCACTGTCAACTATGACTCCGCTTTCAAGAAGTAT
GTGCCGGGTCCGTGTTCGGGCGCCACTTCATCGGTGGCCTCGCCGCCGAG
CACCGCTGCTGTGCAGCAGTTTGTGAGCTCCCGCCACCAGGAGCTGCTCT
CGCAGTATCCCCTGCTGTACTATGCACCCAATCAGCTGATGTGCGCCGCT
GCTGCCGCCCAATATGCAGCCCTTACCGCCCAACAGCAATCGCTGGCCAG
CGCCGCCCACCTGAGCAGCTTCACCGCATCCCTGAATGCCAGCTTGCATC
ACTCGCAGTCGCTGAGAAGAAATCTGGGTCATCCACTGGCCGCGGCAGCT
GCCGTGGCGGCAGTGGCCCAATCCCAGGCGGTGCCCAATTTGCAACATAC
CCTGGAAAAGTCGCCAGTGGCCCAGAGAACAGCCCAGAGTTCGGGATTGC
AAGCTAACTTGAAGAGGAAACGATCGCCGCAGGATCAAGGCGAAGTGACG
CCGCCTCCAGCGTCTACTGCCACTTCCGCCACTGGAGCC
BS04408.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:47:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31670-PA | 1836 | CG31670-RA | 1..873 | 17..889 | 4340 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:33:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
erm-RD | 2881 | CG31670-RD | 229..1101 | 17..889 | 4350 | 99.9 | Plus |
erm-RC | 2881 | CG31670-RC | 229..1101 | 17..889 | 4350 | 99.9 | Plus |
erm-RA | 2881 | CG31670-RA | 229..1101 | 17..889 | 4350 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:33:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1952019..1952879 | 889..29 | 4290 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:33:31 has no hits.
BS04408.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:47:34 Download gff for
BS04408.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31670-PA | 1..873 | 17..889 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:08:47 Download gff for
BS04408.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31670-PA | 1..873 | 17..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:19:35 Download gff for
BS04408.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
erm-RA | 229..1101 | 17..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:42:29 Download gff for
BS04408.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
erm-RA | 229..1101 | 17..889 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:42:29 Download gff for
BS04408.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1952019..1952879 | 29..889 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:19:35 Download gff for
BS04408.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1952019..1952879 | 29..889 | 99 | <- | Minus |
BS04408.complete Sequence
1868 bp assembled on 2008-01-02
GenBank Submission: KX795715
> BS04408.complete
GAAGTTATCAGTCGACATGGTTTACTTTAGTCCGCGTGGCATGCAACCGT
GTAGTCCAGCGGGAGAAATCGCAATGATGCCGCCTTCGAAGAGCCCCGTG
ATGGAGAGCGCCGCCTCCGAACAGAATCCTGCCCAGCAGAGCCAGCAGCA
GGACGAGCAGAGCGCCAAGCGGGCGTGTCCCCTAAAGTTTTCGATAGCCA
AGATCATGGAGCCGGATCACAGGCCCAGCCAAGTGCCACCGCCGCAGCCC
GCTCCGGTTTCCTTCGCCACCAACGATGACGACGAGGATGAGGATCCGGA
GATCGATGCCGACTCGGAGCGCTCCTGCAGCCCCATCGAGGTGATCAGCC
TGGATCAGTCGCCATCCACTGTCAACTATGACTCCGCTTTCAAGAAGTAT
GTGCCGGGTCCGTGTTCGGGCGCCACTTCATCGGTGGCCTCGCCGCCGAG
CACCGCTGCTGTGCAGCAGTTTGTGAGCTCCCGCCACCAGGAGCTGCTCT
CGCAGTATCCCCTGCTGTACTATGCACCCAATCAGCTGATGTGCGCCGCT
GCTGCCGCCCAATATGCAGCCCTTACCGCCCAACAGCAATCGCTGGCCAG
CGCCGCCCACCTGAGCAGCTTCACCGCATCCCTGAATGCCAGCTTGCATC
ACTCGCAGTCGCTGAGAAGAAATCTGGGTCATCCACTGGCCGCGGCAGCT
GCCGTGGCGGCAGTGGCCCAATCCCAGGCGGTGCCCAATTTGCAACATAC
CCTGGAAAAGTCGCCAGTGGCCCAGAGAACAGCCCAGAGTTCGGGATTGC
AAGCTAACTTGAAGAGGAAACGATCGCCGCAGGATCAGGGCGAAGTGACG
CCGCCTCCAGCGTCTACTGCCACTTCCGCCACTGGAGCCAGATCCCGCTC
CCCCTCGCCGCAAGGATCCATCGAGGACAGCAGTCCCGGATCGGCCAGTG
GCGGCAAGCCCAAGACCTTCTCCTGCCTGGAATGTGGCAAGGTGTTCAAC
GCCCACTACAACCTCACCCGCCACATGCCCGTCCACACCGGAGCCAGGCC
GTTTGTTTGCAAGGTCTGCGGCAAGGGATTCCGCCAGGCTTCGACTCTCT
GCCGGCACAAGATCATCCACACGTCGGAAAAGCCGCACAAGTGCCAGACC
TGCGGCAAGGCCTTCAATCGCTCCTCCACCCTCAACACCCACTCGCGCAT
CCACGCCGGCTACAAGCCCTTCGTGTGCGAGTACTGCGGCAAGGGGTTCC
ACCAGAAGGGCAACTACAAGAACCACAAGCTGACCCACAGCGGCGAAAAG
GCCTACAAGTGCAACATCTGCAACAAGGCCTTCCACCAGGTCTACAACCT
CACCTTCCACATGCACACGCACAACGACAAGAAGCCCTACACCTGCCGCG
TCTGCGCCAAGGGATTCTGCCGGAACTTCGATCTGAAGAAGCACATGCGG
AAGCTGCACGAGATCGGCGGCGATCTGGATGACCTGGACATGCCACCCAC
CTACGACAGGCGGCGCGAGTACACGCGCAGGGAGCCACTTGCCTCCGGTT
ACGGCCAGGCATCGGGTCAACTCACGCCGGACTCCAGTTCCGGCAGCATG
TCGCCGCCCATCAATGTCACCACACCGCCACTTTCCAGCGGCGAGACGAG
TAATCCCGCCTGGCCCAGGTCCGCCGTTTCGCAGTATCCGCCCGGTGGCT
TCCATCACCAGCTCGGAGTGGCTCCACCTCACGATTATCCCAGTGGCTCC
GCCTTCTTGCAACTCCAGCCGCAGCAGCCACATCCGCAAAGCCAGCAACA
CCATCAGCAGCAGCAAAGACTCTCGGAGACCTTCATAGCCAAGGTGTTTT
GAAAGCTTTCTAGACCAT
BS04408.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:03:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
erm-RD | 2097 | CG31670-PD | 1..1840 | 17..1856 | 9185 | 99.9 | Plus |
erm-RC | 1965 | CG31670-PC | 1..1840 | 17..1856 | 9185 | 99.9 | Plus |
erm-RA | 1836 | CG31670-PA | 1..1836 | 17..1852 | 9180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:03:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
erm-RD | 2881 | CG31670-RD | 229..2068 | 17..1856 | 9185 | 99.9 | Plus |
erm-RC | 2881 | CG31670-RC | 229..2068 | 17..1856 | 9185 | 99.9 | Plus |
erm-RA | 2881 | CG31670-RA | 229..2068 | 17..1856 | 9185 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:03:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1951052..1952879 | 1856..29 | 9125 | 99.9 | Minus |
Blast to na_te.dros performed 2014-11-28 01:03:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2454..2515 | 1760..1821 | 157 | 72.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6763..6820 | 1759..1816 | 155 | 74.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6799..6859 | 1759..1816 | 153 | 77 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6787 | 1760..1816 | 150 | 73.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6752..6808 | 1760..1816 | 150 | 73.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2363..2424 | 1759..1820 | 148 | 71 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2356 | 1766..1815 | 142 | 76 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2368 | 1759..1815 | 141 | 71.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2402..2464 | 1759..1815 | 139 | 74.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1513..1572 | 1761..1820 | 138 | 70 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6784..6845 | 1759..1820 | 130 | 67.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2798..2855 | 1759..1816 | 128 | 69 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6821..6876 | 1760..1815 | 127 | 69.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6766 | 1772..1816 | 126 | 75.6 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1100..1151 | 1766..1820 | 124 | 72.7 | Plus |
BS04408.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:05:02 Download gff for
BS04408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31670-RA | 1..1836 | 17..1852 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:33:31 Download gff for
BS04408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31670-RA | 195..2029 | 17..1851 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:37:30 Download gff for
BS04408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
erm-RA | 229..2063 | 17..1851 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:05:02 Download gff for
BS04408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31670-RA | 195..2041 | 17..1862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:43:12 Download gff for
BS04408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
erm-RA | 229..2063 | 17..1851 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:43:12 Download gff for
BS04408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1951057..1952879 | 29..1851 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:37:30 Download gff for
BS04408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1951057..1952879 | 29..1851 | 100 | <- | Minus |
BS04408.pep Sequence
Translation from 16 to 1851
> BS04408.pep
MVYFSPRGMQPCSPAGEIAMMPPSKSPVMESAASEQNPAQQSQQQDEQSA
KRACPLKFSIAKIMEPDHRPSQVPPPQPAPVSFATNDDDEDEDPEIDADS
ERSCSPIEVISLDQSPSTVNYDSAFKKYVPGPCSGATSSVASPPSTAAVQ
QFVSSRHQELLSQYPLLYYAPNQLMCAAAAAQYAALTAQQQSLASAAHLS
SFTASLNASLHHSQSLRRNLGHPLAAAAAVAAVAQSQAVPNLQHTLEKSP
VAQRTAQSSGLQANLKRKRSPQDQGEVTPPPASTATSATGARSRSPSPQG
SIEDSSPGSASGGKPKTFSCLECGKVFNAHYNLTRHMPVHTGARPFVCKV
CGKGFRQASTLCRHKIIHTSEKPHKCQTCGKAFNRSSTLNTHSRIHAGYK
PFVCEYCGKGFHQKGNYKNHKLTHSGEKAYKCNICNKAFHQVYNLTFHMH
THNDKKPYTCRVCAKGFCRNFDLKKHMRKLHEIGGDLDDLDMPPTYDRRR
EYTRREPLASGYGQASGQLTPDSSSGSMSPPINVTTPPLSSGETSNPAWP
RSAVSQYPPGGFHHQLGVAPPHDYPSGSAFLQLQPQQPHPQSQQHHQQQQ
RLSETFIAKVF*
BS04408.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:40:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
erm-PD | 698 | CG31670-PD | 1..611 | 1..611 | 3269 | 100 | Plus |
erm-PC | 654 | CG31670-PC | 1..611 | 1..611 | 3269 | 100 | Plus |
erm-PA | 611 | CG31670-PA | 1..611 | 1..611 | 3269 | 100 | Plus |
erm-PB | 603 | CG31670-PB | 1..603 | 9..611 | 3225 | 100 | Plus |
Clamp-PA | 561 | CG1832-PA | 205..523 | 158..482 | 424 | 30.5 | Plus |