Clone BS04408 Report

Search the DGRC for BS04408

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:44
Well:8
Vector:pDNR-Dual
Associated Gene/Transcripterm-RA
Protein status:BS04408.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04408.3prime Sequence

848 bp (784 high quality bases) assembled on 2005-12-01

> BS04408.3prime
ATGGTCTAGAAAGCTTTCAAAACACCTTGGCTATGAAGGTCTCCGAGAGT
CTTTGCTGCTGCTGATGGTGTTGCTGGCTTTGCGGATGTGGCTGCTGCGG
CTGGAGTTGCAAGAAGGCGGAGCCACTGGGATAATCGTGAGGTGGAGCCA
CTCCGAGCTGGTGATGGAAGCCACCGGGCGGATACTGCGAAACGGCGGAC
CTGGGCCAGGCGGGATTACTCGTCTCGCCGCTGGAAAGTGGCGGTGTGGT
GACATTGATGGGCGGCGACATGCTGCCGGAACTGGAGTCCGGCGTGAGTT
GACCCGATGCCTGGCCGTAACCGGAGGCAAGTGGCTCCCTGCGCGTGTAC
TCGCGCCGCCTGTCGTAGGTGGGTGGCATGTCCAGGTCATCCAGATCGCC
GCCGATCTCGTGCAGCTTCCGCATGTGCTTCTTCAGATCGAAGTTCCGGC
AGAATCCCTTGGCGCAGACGCGGCAGGTGTAGGGCTTCTTGTCGTTGTGC
GTGTGCATGTGGAAGGTGAGGTTGTAGACCTGGTGGAAGGCCTTGTTGCA
GATGTTGCACTTGTAGGCCTTTTCGCCGCTGTGGGTCAGCTTGTGGTTCT
TGTAGTTGCCCTTCTGGTGGAACCCCTTGCCGCAGTACTCGCACACGAAG
GGCTTGTAGCCGGCGTGGATGCGCGAGTGGGTGTTGAGGGTGGAGGAGCG
ATTGAAGGCCTTGCCGCANGTCTGGCACTTGTGCGGCTTTTCCGACGTGT
GGATGATCTTGTGCCGGCAGAGAGTCGAAGCCTGGCGGAATCCCTTGCCG
CAGACCTTGCAAACAAACGGCCTGGCTCCGGTGTGGACGGGCATGTGG

BS04408.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:47:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG31670-PA 1836 CG31670-RA 1005..1836 848..17 4141 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:13:21
Subject Length Description Subject Range Query Range Score Percent Strand
erm-RD 2881 CG31670-RD 1233..2068 848..13 4154 99.8 Minus
erm-RC 2881 CG31670-RC 1233..2068 848..13 4154 99.8 Minus
erm-RB 3051 CG31670-RB 1403..2238 848..13 4154 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:13:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1951052..1951887 13..848 4154 99.8 Plus
Blast to na_te.dros performed 2015-02-12 19:13:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2454..2515 109..48 157 72.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6763..6820 110..53 155 74.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6799..6859 110..53 153 77 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6731..6787 109..53 150 73.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6752..6808 109..53 150 73.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2363..2424 110..49 148 71 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2356 103..54 142 76 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2312..2368 110..54 141 71.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2402..2464 110..54 139 74.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1513..1572 108..49 138 70 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6784..6845 110..49 130 67.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2798..2855 110..53 128 69 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6821..6876 109..54 127 69.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6766 97..53 126 75.6 Minus
roo 9092 roo DM_ROO 9092bp 1100..1151 103..49 124 72.7 Minus

BS04408.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:47:33 Download gff for BS04408.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31670-PA 1005..1836 17..848 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:08:46 Download gff for BS04408.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31670-PA 1005..1836 17..848 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:09:09 Download gff for BS04408.3prime
Subject Subject Range Query Range Percent Splice Strand
erm-RB 1403..2245 7..848 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:39:36 Download gff for BS04408.3prime
Subject Subject Range Query Range Percent Splice Strand
erm-RB 1403..2245 7..848 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:39:36 Download gff for BS04408.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 1951045..1951887 7..848 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:09:09 Download gff for BS04408.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1951045..1951887 7..848 99   Plus

BS04408.5prime Sequence

889 bp (770 high quality bases) assembled on 2005-12-01

> BS04408.5prime
GAAGTTATCAGTCGACATGGTTTACTTTAGTCCGCGTGGCATGCAACCGT
GTAGTCCAGCGGGAGAAATCGCAATGATGCCGCCTTCGAAGAGCCCCGTG
ATGGAGAGCGCCGCCTCCGAACAGAATCCTGCCCAGCAGAGCCAGCAGCA
GGACGAGCAGAGCGCCAAGCGGGCGTGTCCCCTAAAGTTTTCGATAGCCA
AGATCATGGAGCCGGATCACAGGCCCAGCCAAGTGCCACCGCCGCAGCCC
GCTCCGGTTTCCTTCGCCACCAACGATGACGACGAGGATGAGGATCCGGA
GATCGATGCCGACTCGGAGCGCTCCTGCAGCCCCATCGAGGTGATCAGCC
TGGATCAGTCGCCATCCACTGTCAACTATGACTCCGCTTTCAAGAAGTAT
GTGCCGGGTCCGTGTTCGGGCGCCACTTCATCGGTGGCCTCGCCGCCGAG
CACCGCTGCTGTGCAGCAGTTTGTGAGCTCCCGCCACCAGGAGCTGCTCT
CGCAGTATCCCCTGCTGTACTATGCACCCAATCAGCTGATGTGCGCCGCT
GCTGCCGCCCAATATGCAGCCCTTACCGCCCAACAGCAATCGCTGGCCAG
CGCCGCCCACCTGAGCAGCTTCACCGCATCCCTGAATGCCAGCTTGCATC
ACTCGCAGTCGCTGAGAAGAAATCTGGGTCATCCACTGGCCGCGGCAGCT
GCCGTGGCGGCAGTGGCCCAATCCCAGGCGGTGCCCAATTTGCAACATAC
CCTGGAAAAGTCGCCAGTGGCCCAGAGAACAGCCCAGAGTTCGGGATTGC
AAGCTAACTTGAAGAGGAAACGATCGCCGCAGGATCAAGGCGAAGTGACG
CCGCCTCCAGCGTCTACTGCCACTTCCGCCACTGGAGCC

BS04408.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:47:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG31670-PA 1836 CG31670-RA 1..873 17..889 4340 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:33:35
Subject Length Description Subject Range Query Range Score Percent Strand
erm-RD 2881 CG31670-RD 229..1101 17..889 4350 99.9 Plus
erm-RC 2881 CG31670-RC 229..1101 17..889 4350 99.9 Plus
erm-RA 2881 CG31670-RA 229..1101 17..889 4350 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:33:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1952019..1952879 889..29 4290 99.9 Minus
Blast to na_te.dros performed on 2015-02-12 05:33:31 has no hits.

BS04408.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:47:34 Download gff for BS04408.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31670-PA 1..873 17..889 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:08:47 Download gff for BS04408.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31670-PA 1..873 17..889 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:19:35 Download gff for BS04408.5prime
Subject Subject Range Query Range Percent Splice Strand
erm-RA 229..1101 17..889 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:42:29 Download gff for BS04408.5prime
Subject Subject Range Query Range Percent Splice Strand
erm-RA 229..1101 17..889 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:42:29 Download gff for BS04408.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 1952019..1952879 29..889 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:19:35 Download gff for BS04408.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1952019..1952879 29..889 99 <- Minus

BS04408.complete Sequence

1868 bp assembled on 2008-01-02

GenBank Submission: KX795715

> BS04408.complete
GAAGTTATCAGTCGACATGGTTTACTTTAGTCCGCGTGGCATGCAACCGT
GTAGTCCAGCGGGAGAAATCGCAATGATGCCGCCTTCGAAGAGCCCCGTG
ATGGAGAGCGCCGCCTCCGAACAGAATCCTGCCCAGCAGAGCCAGCAGCA
GGACGAGCAGAGCGCCAAGCGGGCGTGTCCCCTAAAGTTTTCGATAGCCA
AGATCATGGAGCCGGATCACAGGCCCAGCCAAGTGCCACCGCCGCAGCCC
GCTCCGGTTTCCTTCGCCACCAACGATGACGACGAGGATGAGGATCCGGA
GATCGATGCCGACTCGGAGCGCTCCTGCAGCCCCATCGAGGTGATCAGCC
TGGATCAGTCGCCATCCACTGTCAACTATGACTCCGCTTTCAAGAAGTAT
GTGCCGGGTCCGTGTTCGGGCGCCACTTCATCGGTGGCCTCGCCGCCGAG
CACCGCTGCTGTGCAGCAGTTTGTGAGCTCCCGCCACCAGGAGCTGCTCT
CGCAGTATCCCCTGCTGTACTATGCACCCAATCAGCTGATGTGCGCCGCT
GCTGCCGCCCAATATGCAGCCCTTACCGCCCAACAGCAATCGCTGGCCAG
CGCCGCCCACCTGAGCAGCTTCACCGCATCCCTGAATGCCAGCTTGCATC
ACTCGCAGTCGCTGAGAAGAAATCTGGGTCATCCACTGGCCGCGGCAGCT
GCCGTGGCGGCAGTGGCCCAATCCCAGGCGGTGCCCAATTTGCAACATAC
CCTGGAAAAGTCGCCAGTGGCCCAGAGAACAGCCCAGAGTTCGGGATTGC
AAGCTAACTTGAAGAGGAAACGATCGCCGCAGGATCAGGGCGAAGTGACG
CCGCCTCCAGCGTCTACTGCCACTTCCGCCACTGGAGCCAGATCCCGCTC
CCCCTCGCCGCAAGGATCCATCGAGGACAGCAGTCCCGGATCGGCCAGTG
GCGGCAAGCCCAAGACCTTCTCCTGCCTGGAATGTGGCAAGGTGTTCAAC
GCCCACTACAACCTCACCCGCCACATGCCCGTCCACACCGGAGCCAGGCC
GTTTGTTTGCAAGGTCTGCGGCAAGGGATTCCGCCAGGCTTCGACTCTCT
GCCGGCACAAGATCATCCACACGTCGGAAAAGCCGCACAAGTGCCAGACC
TGCGGCAAGGCCTTCAATCGCTCCTCCACCCTCAACACCCACTCGCGCAT
CCACGCCGGCTACAAGCCCTTCGTGTGCGAGTACTGCGGCAAGGGGTTCC
ACCAGAAGGGCAACTACAAGAACCACAAGCTGACCCACAGCGGCGAAAAG
GCCTACAAGTGCAACATCTGCAACAAGGCCTTCCACCAGGTCTACAACCT
CACCTTCCACATGCACACGCACAACGACAAGAAGCCCTACACCTGCCGCG
TCTGCGCCAAGGGATTCTGCCGGAACTTCGATCTGAAGAAGCACATGCGG
AAGCTGCACGAGATCGGCGGCGATCTGGATGACCTGGACATGCCACCCAC
CTACGACAGGCGGCGCGAGTACACGCGCAGGGAGCCACTTGCCTCCGGTT
ACGGCCAGGCATCGGGTCAACTCACGCCGGACTCCAGTTCCGGCAGCATG
TCGCCGCCCATCAATGTCACCACACCGCCACTTTCCAGCGGCGAGACGAG
TAATCCCGCCTGGCCCAGGTCCGCCGTTTCGCAGTATCCGCCCGGTGGCT
TCCATCACCAGCTCGGAGTGGCTCCACCTCACGATTATCCCAGTGGCTCC
GCCTTCTTGCAACTCCAGCCGCAGCAGCCACATCCGCAAAGCCAGCAACA
CCATCAGCAGCAGCAAAGACTCTCGGAGACCTTCATAGCCAAGGTGTTTT
GAAAGCTTTCTAGACCAT

BS04408.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:03:05
Subject Length Description Subject Range Query Range Score Percent Strand
erm-RD 2097 CG31670-PD 1..1840 17..1856 9185 99.9 Plus
erm-RC 1965 CG31670-PC 1..1840 17..1856 9185 99.9 Plus
erm-RA 1836 CG31670-PA 1..1836 17..1852 9180 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:03:06
Subject Length Description Subject Range Query Range Score Percent Strand
erm-RD 2881 CG31670-RD 229..2068 17..1856 9185 99.9 Plus
erm-RC 2881 CG31670-RC 229..2068 17..1856 9185 99.9 Plus
erm-RA 2881 CG31670-RA 229..2068 17..1856 9185 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:03:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1951052..1952879 1856..29 9125 99.9 Minus
Blast to na_te.dros performed 2014-11-28 01:03:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2454..2515 1760..1821 157 72.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6763..6820 1759..1816 155 74.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6799..6859 1759..1816 153 77 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6731..6787 1760..1816 150 73.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6752..6808 1760..1816 150 73.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2363..2424 1759..1820 148 71 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2356 1766..1815 142 76 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2312..2368 1759..1815 141 71.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2402..2464 1759..1815 139 74.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1513..1572 1761..1820 138 70 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6784..6845 1759..1820 130 67.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2798..2855 1759..1816 128 69 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6821..6876 1760..1815 127 69.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6766 1772..1816 126 75.6 Plus
roo 9092 roo DM_ROO 9092bp 1100..1151 1766..1820 124 72.7 Plus

BS04408.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:05:02 Download gff for BS04408.complete
Subject Subject Range Query Range Percent Splice Strand
CG31670-RA 1..1836 17..1852 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:33:31 Download gff for BS04408.complete
Subject Subject Range Query Range Percent Splice Strand
CG31670-RA 195..2029 17..1851 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:37:30 Download gff for BS04408.complete
Subject Subject Range Query Range Percent Splice Strand
erm-RA 229..2063 17..1851 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:05:02 Download gff for BS04408.complete
Subject Subject Range Query Range Percent Splice Strand
CG31670-RA 195..2041 17..1862 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:43:12 Download gff for BS04408.complete
Subject Subject Range Query Range Percent Splice Strand
erm-RA 229..2063 17..1851 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:43:12 Download gff for BS04408.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1951057..1952879 29..1851 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:37:30 Download gff for BS04408.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1951057..1952879 29..1851 100 <- Minus

BS04408.pep Sequence

Translation from 16 to 1851

> BS04408.pep
MVYFSPRGMQPCSPAGEIAMMPPSKSPVMESAASEQNPAQQSQQQDEQSA
KRACPLKFSIAKIMEPDHRPSQVPPPQPAPVSFATNDDDEDEDPEIDADS
ERSCSPIEVISLDQSPSTVNYDSAFKKYVPGPCSGATSSVASPPSTAAVQ
QFVSSRHQELLSQYPLLYYAPNQLMCAAAAAQYAALTAQQQSLASAAHLS
SFTASLNASLHHSQSLRRNLGHPLAAAAAVAAVAQSQAVPNLQHTLEKSP
VAQRTAQSSGLQANLKRKRSPQDQGEVTPPPASTATSATGARSRSPSPQG
SIEDSSPGSASGGKPKTFSCLECGKVFNAHYNLTRHMPVHTGARPFVCKV
CGKGFRQASTLCRHKIIHTSEKPHKCQTCGKAFNRSSTLNTHSRIHAGYK
PFVCEYCGKGFHQKGNYKNHKLTHSGEKAYKCNICNKAFHQVYNLTFHMH
THNDKKPYTCRVCAKGFCRNFDLKKHMRKLHEIGGDLDDLDMPPTYDRRR
EYTRREPLASGYGQASGQLTPDSSSGSMSPPINVTTPPLSSGETSNPAWP
RSAVSQYPPGGFHHQLGVAPPHDYPSGSAFLQLQPQQPHPQSQQHHQQQQ
RLSETFIAKVF*

BS04408.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:40:07
Subject Length Description Subject Range Query Range Score Percent Strand
erm-PD 698 CG31670-PD 1..611 1..611 3269 100 Plus
erm-PC 654 CG31670-PC 1..611 1..611 3269 100 Plus
erm-PA 611 CG31670-PA 1..611 1..611 3269 100 Plus
erm-PB 603 CG31670-PB 1..603 9..611 3225 100 Plus
Clamp-PA 561 CG1832-PA 205..523 158..482 424 30.5 Plus