Clone BS04409 Report

Search the DGRC for BS04409

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:44
Well:9
Vector:pDNR-Dual
Associated Gene/TranscriptERR-RA
Protein status:BS04409.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04409.3prime Sequence

898 bp (854 high quality bases) assembled on 2005-12-01

> BS04409.3prime
ATGGTCTAGAAAGCTTTCACCTGGCCAGCGGCTCGAGCATCTCGAGGAAC
AGTTTCTTCATGGTAATGACTTCATCGCGTGCAATTCCACGCCAAAATCT
TCGCAGGATATCATCCGCCTGCCGCAGCGAAGGCAGCAAAAGCAGCAATT
GTTGCTGATGCGACACGGCCGACGAATGACGCAGCAAGTAGACCACATCG
TTTAGAGAATTAAGAATCGTATCACGAAATGCGCGCAGGGAACTCTGATC
ATCCAGCAGAATGTCGCAGTTGGCCAGCAGGAGCGCCTTTAGCAAGTAGT
ACTCCTCCCTTCGTGGCGATATTCTTTCCATGCGCTGTGCGATCTGGACG
CAGTGGTAGTAGAACTCCGTGTAACCGCACTCCTTGGCCAAATGTTCATC
CATCCAGACATCCGTGGCGAAGCATAACTTGCCATTGAACGGTAGGGACC
GGAAGGTCAGCTGGAGCGTCAGGATCTCTGCCCACGACACCTGGAGAAGC
TTCATCTGGTCGTTAAGTGGCAGATCTATAAAGCCAGGTATCTGCTTGGC
CCAGCCAATGACGCTGACCAATTCCTTGTCGTAAATATCACTAAGGACGC
TTAGTATCTCATTGGGATCATTGTTGTTGTTGTTTTGGAAAATGCAAGTC
CCATTGGGCGTAACAACGCTGGACTCCAGTTTTATGCTGCCCGAGGAGGA
TGAGGCCTCATCATTAGTTATGCTAGTCGTGTGGACTTGCGGCGGCGGCG
TTTGGACGCTCAAGGCATCCGGCTCATATGAATTGAGCACCTCCAGTATC
TTGACATCGCACAGCGAGGTGGTGTTGGATTGGTATAGCAGCTGCATAGT
CTGGTAAGAGTTTGATACAGGATTCCTTCGGTACTTCTGCCGTCCTCC

BS04409.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:47:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG7404-PA 1455 ERR-RA 574..1455 898..17 4410 100 Minus
CG7404-PB 1491 ERR-RB 610..1491 898..17 4410 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 03:04:24
Subject Length Description Subject Range Query Range Score Percent Strand
ERR-RB 1730 CG7404-RB 691..1574 898..15 4420 100 Minus
ERR-RA 2119 CG7404-RA 1080..1963 898..15 4420 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 03:04:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8183517..8184400 15..898 4420 100 Plus
Blast to na_te.dros performed on 2015-02-09 03:04:21 has no hits.

BS04409.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:47:35 Download gff for BS04409.3prime
Subject Subject Range Query Range Percent Splice Strand
ERR-PB 610..1491 17..898 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:08:49 Download gff for BS04409.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7404-PB 610..1491 17..898 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 06:11:19 Download gff for BS04409.3prime
Subject Subject Range Query Range Percent Splice Strand
ERR-RA 1080..1969 10..898 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:20:49 Download gff for BS04409.3prime
Subject Subject Range Query Range Percent Splice Strand
ERR-RA 1080..1969 10..898 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:20:49 Download gff for BS04409.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 8183511..8184400 10..898 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 06:11:19 Download gff for BS04409.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8176611..8177500 10..898 99   Plus

BS04409.5prime Sequence

855 bp (799 high quality bases) assembled on 2005-11-29

> BS04409.5prime
GAAGTTATCAGTCGACATGTCCGACGGCGTCAGCATCTTGCACATCAAAC
AGGAGGTGGACACTCCATCGGCGTCCTGCTTTAGTCCCAGCTCCAAGTCA
ACGGCCACGCAGAGTGGCACAAACGGCCTGAAATCCTCGCCCTCGGTTTC
GCCGGAAAGGCAGCTCTGCAGCTCGACGACCTCTCTATCCTGCGATTTGC
ACAATGTATCCTTAAGCAATGATGGCGATAGTCTGAAAGGAAGTGGTACA
AGTGGCGGCAATGGCGGAGGAGGAGGTGGTGGTACGAGTGGTGGAAATGC
GACCAATGCGAGTGCCGGAGCTGGATCGGGATCCGTCAGGGACGAGCTCC
GCCGATTGTGTTTGGTTTGTGGCGATGTGGCCAGTGGATTCCACTATGGT
GTGGCGAGTTGTGAGGCTTGCAAAGCGTTCTTTAAACGCACCATCCAAGG
CAACATCGAGTACACGTGTCCGGCGAACAACGAGTGTGAGATTAACAAGC
GGAGACGCAAGGCCTGCCAAGCGTGTCGCTTCCAGAAATGTCTACTAATG
GGCATGCTCAAGGAGGGTGTGCGCTTGGATCGAGTTCGTGGAGGACGGCA
GAAGTACCGAAGGAATCCTGTATCAAACTCTTACCAGACTATGCAGCTGC
TATACCAATCCAACACCACCTCGCTGTGCGATGTCAAGATACTGGAGGTG
CTCAATTCATATGAGCCGGATGCCTTGAGCGTCCAAACGCCGCCGCCGCA
AGTCCACACGACTAGCATAACTAATGATGAGGCCTCATCCTCCTCGGGCA
GCATAAAACTGGAGTCCAGCGTTGTTACGCCCAATGGGACTTGCATTTTC
CAAAA

BS04409.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:47:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG7404-PB 1491 ERR-RB 35..875 15..855 4205 100 Plus
CG7404-PA 1455 ERR-RA 1..839 17..855 4195 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:18:09
Subject Length Description Subject Range Query Range Score Percent Strand
ERR-RB 1730 CG7404-RB 116..956 15..855 4205 100 Plus
ERR-RA 2119 CG7404-RA 505..1345 15..855 4205 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:18:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8184483..8185031 563..15 2745 100 Minus
3L 28110227 3L 8184135..8184429 855..561 1475 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:18:08 has no hits.

BS04409.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:47:36 Download gff for BS04409.5prime
Subject Subject Range Query Range Percent Splice Strand
ERR-PB 30..871 9..851 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:08:50 Download gff for BS04409.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7404-PB 30..871 9..851 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:45:03 Download gff for BS04409.5prime
Subject Subject Range Query Range Percent Splice Strand
ERR-RA 500..1341 9..851 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:12:09 Download gff for BS04409.5prime
Subject Subject Range Query Range Percent Splice Strand
ERR-RA 500..1341 9..851 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:12:09 Download gff for BS04409.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8184139..8184427 563..851 100 <- Minus
3L 8184484..8185036 9..562 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:45:03 Download gff for BS04409.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8177239..8177527 563..851 100 <- Minus
arm_3L 8177584..8178136 9..562 99   Minus

BS04409.complete Sequence

1487 bp (1487 high quality bases) assembled on 2005-09-13

GenBank Submission: FJ634931

> BS04409.complete
GAAGTTATCAGTCGACATGTCCGACGGCGTCAGCATCTTGCACATCAAAC
AGGAGGTGGACACTCCATCGGCGTCCTGCTTTAGTCCCAGCTCCAAGTCA
ACGGCCACGCAGAGTGGCACAAACGGCCTGAAATCCTCGCCCTCGGTTTC
GCCGGAAAGGCAGCTCTGCAGCTCGACGACCTCTCTATCCTGCGATTTGC
ACAATGTATCCTTAAGCAATGATGGCGATAGTCTGAAAGGAAGTGGTACA
AGTGGCGGCAATGGCGGAGGAGGAGGTGGTGGTACGAGTGGTGGAAATGC
GACCAATGCGAGTGCCGGAGCTGGATCGGGATCCGTCAGGGACGAGCTCC
GCCGATTGTGTTTGGTTTGTGGCGATGTGGCCAGTGGATTCCACTATGGT
GTGGCGAGTTGTGAGGCTTGCAAAGCGTTCTTTAAACGCACCATCCAAGG
CAACATCGAGTACACGTGTCCGGCGAACAACGAGTGTGAGATTAACAAGC
GGAGACGCAAGGCCTGCCAAGCGTGTCGCTTCCAGAAATGTCTACTAATG
GGCATGCTCAAGGAGGGTGTGCGCTTGGATCGAGTTCGTGGAGGACGGCA
GAAGTACCGAAGGAATCCTGTATCAAACTCTTACCAGACTATGCAGCTGC
TATACCAATCCAACACCACCTCGCTGTGCGATGTCAAGATACTGGAGGTG
CTCAATTCATATGAGCCGGATGCCTTGAGCGTCCAAACGCCGCCGCCGCA
AGTCCACACGACTAGCATAACTAATGATGAGGCCTCATCCTCCTCGGGCA
GCATAAAACTGGAGTCCAGCGTTGTTACGCCCAATGGGACTTGCATTTTC
CAAAACAACAACAACAATGATCCCAATGAGATACTAAGCGTCCTTAGTGA
TATTTACGACAAGGAATTGGTCAGCGTCATTGGCTGGGCCAAGCAGATAC
CTGGCTTTATAGATCTGCCACTTAACGACCAGATGAAGCTTCTCCAGGTG
TCGTGGGCAGAGATCCTGACGCTCCAGCTGACCTTCCGGTCCCTACCGTT
CAATGGCAAGTTATGCTTCGCCACGGATGTCTGGATGGATGAACATTTGG
CCAAGGAGTGCGGTTACACGGAGTTCTACTACCACTGCGTCCAGATCGCA
CAGCGCATGGAAAGAATATCGCCACGAAGGGAGGAGTACTACTTGCTAAA
GGCGCTCCTGCTGGCCAACTGCGACATTCTGCTGGATGATCAGAGTTCCC
TGCGCGCATTTCGTGATACGATTCTTAATTCTCTAAACGATGTGGTCTAC
TTGCTGCGTCATTCGTCGGCCGTGTCGCATCAGCAACAATTGCTGCTTTT
GCTGCCTTCGCTGCGGCAGGCGGATGATATCCTGCGAAGATTTTGGCGTG
GAATTGCACGCGATGAAGTCATTACCATGAAGAAACTGTTCCTCGAGATG
CTCGAGCCGCTGGCCAGGTGAAAGCTTTCTAGACCAT

BS04409.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:49:11
Subject Length Description Subject Range Query Range Score Percent Strand
ERR-RB 1491 CG7404-PB 35..1491 15..1471 7285 100 Plus
ERR-RA 1455 CG7404-PA 1..1455 17..1471 7275 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:49:12
Subject Length Description Subject Range Query Range Score Percent Strand
ERR-RB 1730 CG7404-RB 116..1574 15..1473 7295 100 Plus
ERR-RA 2119 CG7404-RA 505..1963 15..1473 7295 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:49:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8183517..8184429 1473..561 4565 100 Minus
3L 28110227 3L 8184483..8185031 563..15 2745 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:49:10 has no hits.

BS04409.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:32:26 Download gff for BS04409.complete
Subject Subject Range Query Range Percent Splice Strand
ERR-RB 30..1491 9..1471 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:16:36 Download gff for BS04409.complete
Subject Subject Range Query Range Percent Splice Strand
ERR-RB 107..1576 9..1478 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:32 Download gff for BS04409.complete
Subject Subject Range Query Range Percent Splice Strand
ERR-RA 507..1960 17..1470 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:32:26 Download gff for BS04409.complete
Subject Subject Range Query Range Percent Splice Strand
ERR-RB 107..1576 9..1478 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:27:42 Download gff for BS04409.complete
Subject Subject Range Query Range Percent Splice Strand
ERR-RA 507..1960 17..1470 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:27:42 Download gff for BS04409.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8183520..8184427 563..1470 100 <- Minus
3L 8184484..8185029 17..562 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:32 Download gff for BS04409.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8176620..8177527 563..1470 100 <- Minus
arm_3L 8177584..8178129 17..562 100   Minus

BS04409.pep Sequence

Translation from 16 to 1470

> BS04409.pep
MSDGVSILHIKQEVDTPSASCFSPSSKSTATQSGTNGLKSSPSVSPERQL
CSSTTSLSCDLHNVSLSNDGDSLKGSGTSGGNGGGGGGGTSGGNATNASA
GAGSGSVRDELRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYT
CPANNECEINKRRRKACQACRFQKCLLMGMLKEGVRLDRVRGGRQKYRRN
PVSNSYQTMQLLYQSNTTSLCDVKILEVLNSYEPDALSVQTPPPQVHTTS
ITNDEASSSSGSIKLESSVVTPNGTCIFQNNNNNDPNEILSVLSDIYDKE
LVSVIGWAKQIPGFIDLPLNDQMKLLQVSWAEILTLQLTFRSLPFNGKLC
FATDVWMDEHLAKECGYTEFYYHCVQIAQRMERISPRREEYYLLKALLLA
NCDILLDDQSSLRAFRDTILNSLNDVVYLLRHSSAVSHQQQLLLLLPSLR
QADDILRRFWRGIARDEVITMKKLFLEMLEPLAR*

BS04409.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:29:14
Subject Length Description Subject Range Query Range Score Percent Strand
ERR-PB 496 CG7404-PB 13..496 1..484 2516 100 Plus
ERR-PA 484 CG7404-PA 1..484 1..484 2516 100 Plus
ftz-f1-PC 803 CG4059-PC 200..366 36..197 338 41.9 Plus
ftz-f1-PA 803 CG4059-PA 200..366 36..197 338 41.9 Plus
ftz-f1-PD 853 CG4059-PD 200..366 36..197 338 41.9 Plus