Clone Sequence Records
BS04409.3prime Sequence
898 bp (854 high quality bases) assembled on 2005-12-01
> BS04409.3prime
ATGGTCTAGAAAGCTTTCACCTGGCCAGCGGCTCGAGCATCTCGAGGAAC
AGTTTCTTCATGGTAATGACTTCATCGCGTGCAATTCCACGCCAAAATCT
TCGCAGGATATCATCCGCCTGCCGCAGCGAAGGCAGCAAAAGCAGCAATT
GTTGCTGATGCGACACGGCCGACGAATGACGCAGCAAGTAGACCACATCG
TTTAGAGAATTAAGAATCGTATCACGAAATGCGCGCAGGGAACTCTGATC
ATCCAGCAGAATGTCGCAGTTGGCCAGCAGGAGCGCCTTTAGCAAGTAGT
ACTCCTCCCTTCGTGGCGATATTCTTTCCATGCGCTGTGCGATCTGGACG
CAGTGGTAGTAGAACTCCGTGTAACCGCACTCCTTGGCCAAATGTTCATC
CATCCAGACATCCGTGGCGAAGCATAACTTGCCATTGAACGGTAGGGACC
GGAAGGTCAGCTGGAGCGTCAGGATCTCTGCCCACGACACCTGGAGAAGC
TTCATCTGGTCGTTAAGTGGCAGATCTATAAAGCCAGGTATCTGCTTGGC
CCAGCCAATGACGCTGACCAATTCCTTGTCGTAAATATCACTAAGGACGC
TTAGTATCTCATTGGGATCATTGTTGTTGTTGTTTTGGAAAATGCAAGTC
CCATTGGGCGTAACAACGCTGGACTCCAGTTTTATGCTGCCCGAGGAGGA
TGAGGCCTCATCATTAGTTATGCTAGTCGTGTGGACTTGCGGCGGCGGCG
TTTGGACGCTCAAGGCATCCGGCTCATATGAATTGAGCACCTCCAGTATC
TTGACATCGCACAGCGAGGTGGTGTTGGATTGGTATAGCAGCTGCATAGT
CTGGTAAGAGTTTGATACAGGATTCCTTCGGTACTTCTGCCGTCCTCC
BS04409.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:47:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7404-PA | 1455 | ERR-RA | 574..1455 | 898..17 | 4410 | 100 | Minus |
CG7404-PB | 1491 | ERR-RB | 610..1491 | 898..17 | 4410 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 03:04:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ERR-RB | 1730 | CG7404-RB | 691..1574 | 898..15 | 4420 | 100 | Minus |
ERR-RA | 2119 | CG7404-RA | 1080..1963 | 898..15 | 4420 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 03:04:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8183517..8184400 | 15..898 | 4420 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 03:04:21 has no hits.
BS04409.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:47:35 Download gff for
BS04409.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ERR-PB | 610..1491 | 17..898 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:08:49 Download gff for
BS04409.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7404-PB | 610..1491 | 17..898 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 06:11:19 Download gff for
BS04409.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ERR-RA | 1080..1969 | 10..898 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:20:49 Download gff for
BS04409.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ERR-RA | 1080..1969 | 10..898 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:20:49 Download gff for
BS04409.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8183511..8184400 | 10..898 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 06:11:19 Download gff for
BS04409.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8176611..8177500 | 10..898 | 99 | | Plus |
BS04409.5prime Sequence
855 bp (799 high quality bases) assembled on 2005-11-29
> BS04409.5prime
GAAGTTATCAGTCGACATGTCCGACGGCGTCAGCATCTTGCACATCAAAC
AGGAGGTGGACACTCCATCGGCGTCCTGCTTTAGTCCCAGCTCCAAGTCA
ACGGCCACGCAGAGTGGCACAAACGGCCTGAAATCCTCGCCCTCGGTTTC
GCCGGAAAGGCAGCTCTGCAGCTCGACGACCTCTCTATCCTGCGATTTGC
ACAATGTATCCTTAAGCAATGATGGCGATAGTCTGAAAGGAAGTGGTACA
AGTGGCGGCAATGGCGGAGGAGGAGGTGGTGGTACGAGTGGTGGAAATGC
GACCAATGCGAGTGCCGGAGCTGGATCGGGATCCGTCAGGGACGAGCTCC
GCCGATTGTGTTTGGTTTGTGGCGATGTGGCCAGTGGATTCCACTATGGT
GTGGCGAGTTGTGAGGCTTGCAAAGCGTTCTTTAAACGCACCATCCAAGG
CAACATCGAGTACACGTGTCCGGCGAACAACGAGTGTGAGATTAACAAGC
GGAGACGCAAGGCCTGCCAAGCGTGTCGCTTCCAGAAATGTCTACTAATG
GGCATGCTCAAGGAGGGTGTGCGCTTGGATCGAGTTCGTGGAGGACGGCA
GAAGTACCGAAGGAATCCTGTATCAAACTCTTACCAGACTATGCAGCTGC
TATACCAATCCAACACCACCTCGCTGTGCGATGTCAAGATACTGGAGGTG
CTCAATTCATATGAGCCGGATGCCTTGAGCGTCCAAACGCCGCCGCCGCA
AGTCCACACGACTAGCATAACTAATGATGAGGCCTCATCCTCCTCGGGCA
GCATAAAACTGGAGTCCAGCGTTGTTACGCCCAATGGGACTTGCATTTTC
CAAAA
BS04409.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:47:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7404-PB | 1491 | ERR-RB | 35..875 | 15..855 | 4205 | 100 | Plus |
CG7404-PA | 1455 | ERR-RA | 1..839 | 17..855 | 4195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:18:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ERR-RB | 1730 | CG7404-RB | 116..956 | 15..855 | 4205 | 100 | Plus |
ERR-RA | 2119 | CG7404-RA | 505..1345 | 15..855 | 4205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:18:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8184483..8185031 | 563..15 | 2745 | 100 | Minus |
3L | 28110227 | 3L | 8184135..8184429 | 855..561 | 1475 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:18:08 has no hits.
BS04409.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:47:36 Download gff for
BS04409.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ERR-PB | 30..871 | 9..851 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:08:50 Download gff for
BS04409.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7404-PB | 30..871 | 9..851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:45:03 Download gff for
BS04409.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ERR-RA | 500..1341 | 9..851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:12:09 Download gff for
BS04409.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ERR-RA | 500..1341 | 9..851 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:12:09 Download gff for
BS04409.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8184139..8184427 | 563..851 | 100 | <- | Minus |
3L | 8184484..8185036 | 9..562 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:45:03 Download gff for
BS04409.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8177239..8177527 | 563..851 | 100 | <- | Minus |
arm_3L | 8177584..8178136 | 9..562 | 99 | | Minus |
BS04409.complete Sequence
1487 bp (1487 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ634931
> BS04409.complete
GAAGTTATCAGTCGACATGTCCGACGGCGTCAGCATCTTGCACATCAAAC
AGGAGGTGGACACTCCATCGGCGTCCTGCTTTAGTCCCAGCTCCAAGTCA
ACGGCCACGCAGAGTGGCACAAACGGCCTGAAATCCTCGCCCTCGGTTTC
GCCGGAAAGGCAGCTCTGCAGCTCGACGACCTCTCTATCCTGCGATTTGC
ACAATGTATCCTTAAGCAATGATGGCGATAGTCTGAAAGGAAGTGGTACA
AGTGGCGGCAATGGCGGAGGAGGAGGTGGTGGTACGAGTGGTGGAAATGC
GACCAATGCGAGTGCCGGAGCTGGATCGGGATCCGTCAGGGACGAGCTCC
GCCGATTGTGTTTGGTTTGTGGCGATGTGGCCAGTGGATTCCACTATGGT
GTGGCGAGTTGTGAGGCTTGCAAAGCGTTCTTTAAACGCACCATCCAAGG
CAACATCGAGTACACGTGTCCGGCGAACAACGAGTGTGAGATTAACAAGC
GGAGACGCAAGGCCTGCCAAGCGTGTCGCTTCCAGAAATGTCTACTAATG
GGCATGCTCAAGGAGGGTGTGCGCTTGGATCGAGTTCGTGGAGGACGGCA
GAAGTACCGAAGGAATCCTGTATCAAACTCTTACCAGACTATGCAGCTGC
TATACCAATCCAACACCACCTCGCTGTGCGATGTCAAGATACTGGAGGTG
CTCAATTCATATGAGCCGGATGCCTTGAGCGTCCAAACGCCGCCGCCGCA
AGTCCACACGACTAGCATAACTAATGATGAGGCCTCATCCTCCTCGGGCA
GCATAAAACTGGAGTCCAGCGTTGTTACGCCCAATGGGACTTGCATTTTC
CAAAACAACAACAACAATGATCCCAATGAGATACTAAGCGTCCTTAGTGA
TATTTACGACAAGGAATTGGTCAGCGTCATTGGCTGGGCCAAGCAGATAC
CTGGCTTTATAGATCTGCCACTTAACGACCAGATGAAGCTTCTCCAGGTG
TCGTGGGCAGAGATCCTGACGCTCCAGCTGACCTTCCGGTCCCTACCGTT
CAATGGCAAGTTATGCTTCGCCACGGATGTCTGGATGGATGAACATTTGG
CCAAGGAGTGCGGTTACACGGAGTTCTACTACCACTGCGTCCAGATCGCA
CAGCGCATGGAAAGAATATCGCCACGAAGGGAGGAGTACTACTTGCTAAA
GGCGCTCCTGCTGGCCAACTGCGACATTCTGCTGGATGATCAGAGTTCCC
TGCGCGCATTTCGTGATACGATTCTTAATTCTCTAAACGATGTGGTCTAC
TTGCTGCGTCATTCGTCGGCCGTGTCGCATCAGCAACAATTGCTGCTTTT
GCTGCCTTCGCTGCGGCAGGCGGATGATATCCTGCGAAGATTTTGGCGTG
GAATTGCACGCGATGAAGTCATTACCATGAAGAAACTGTTCCTCGAGATG
CTCGAGCCGCTGGCCAGGTGAAAGCTTTCTAGACCAT
BS04409.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:49:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ERR-RB | 1491 | CG7404-PB | 35..1491 | 15..1471 | 7285 | 100 | Plus |
ERR-RA | 1455 | CG7404-PA | 1..1455 | 17..1471 | 7275 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:49:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ERR-RB | 1730 | CG7404-RB | 116..1574 | 15..1473 | 7295 | 100 | Plus |
ERR-RA | 2119 | CG7404-RA | 505..1963 | 15..1473 | 7295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:49:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8183517..8184429 | 1473..561 | 4565 | 100 | Minus |
3L | 28110227 | 3L | 8184483..8185031 | 563..15 | 2745 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:49:10 has no hits.
BS04409.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:32:26 Download gff for
BS04409.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ERR-RB | 30..1491 | 9..1471 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:16:36 Download gff for
BS04409.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ERR-RB | 107..1576 | 9..1478 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:32 Download gff for
BS04409.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ERR-RA | 507..1960 | 17..1470 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:32:26 Download gff for
BS04409.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ERR-RB | 107..1576 | 9..1478 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:27:42 Download gff for
BS04409.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ERR-RA | 507..1960 | 17..1470 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:27:42 Download gff for
BS04409.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8183520..8184427 | 563..1470 | 100 | <- | Minus |
3L | 8184484..8185029 | 17..562 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:32 Download gff for
BS04409.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8176620..8177527 | 563..1470 | 100 | <- | Minus |
arm_3L | 8177584..8178129 | 17..562 | 100 | | Minus |
BS04409.pep Sequence
Translation from 16 to 1470
> BS04409.pep
MSDGVSILHIKQEVDTPSASCFSPSSKSTATQSGTNGLKSSPSVSPERQL
CSSTTSLSCDLHNVSLSNDGDSLKGSGTSGGNGGGGGGGTSGGNATNASA
GAGSGSVRDELRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYT
CPANNECEINKRRRKACQACRFQKCLLMGMLKEGVRLDRVRGGRQKYRRN
PVSNSYQTMQLLYQSNTTSLCDVKILEVLNSYEPDALSVQTPPPQVHTTS
ITNDEASSSSGSIKLESSVVTPNGTCIFQNNNNNDPNEILSVLSDIYDKE
LVSVIGWAKQIPGFIDLPLNDQMKLLQVSWAEILTLQLTFRSLPFNGKLC
FATDVWMDEHLAKECGYTEFYYHCVQIAQRMERISPRREEYYLLKALLLA
NCDILLDDQSSLRAFRDTILNSLNDVVYLLRHSSAVSHQQQLLLLLPSLR
QADDILRRFWRGIARDEVITMKKLFLEMLEPLAR*
BS04409.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:29:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ERR-PB | 496 | CG7404-PB | 13..496 | 1..484 | 2516 | 100 | Plus |
ERR-PA | 484 | CG7404-PA | 1..484 | 1..484 | 2516 | 100 | Plus |
ftz-f1-PC | 803 | CG4059-PC | 200..366 | 36..197 | 338 | 41.9 | Plus |
ftz-f1-PA | 803 | CG4059-PA | 200..366 | 36..197 | 338 | 41.9 | Plus |
ftz-f1-PD | 853 | CG4059-PD | 200..366 | 36..197 | 338 | 41.9 | Plus |