Clone Sequence Records
BS04410.3prime Sequence
920 bp (878 high quality bases) assembled on 2005-12-01
> BS04410.3prime
ATGGTCTAGAAAGCTTTTAACCCATGCTAGTCAGTTGCAGCAGAGCACAA
GCGGTCTGCTGATTATCCCCCGATTCGTGGACCTTGCGATGGGTGCGCAA
GGCAGAGGGTTGTATAAATTTCTTGCCGCAAACGTGACACTCAAAGTTCT
TTTCGCCAGTGTGGGTCATTTCGTGATATTTTCGCGTGTCGGTGGTGGCA
AATTTCTTTTCGCAATAGCTGCAGGCATAATCTCGTGCCTTCTCGTGGAT
TGCGCGGATATGTTTCTTAAGACTCGTTGAGCTGTTGCAAACTTTGGGGC
AATCCTTGCAGGACCAGGTCCTTTCCAGAGTATGATAGTTGATATGCAGT
CGCAGTTCGTTTTTGGTCGTCTTCTTGAGACCACAGTAGGGGCAACTAAA
GTTCTTTATGCCCTGGTGACGCATCATGTGGATCTTGAGTTTCTCCGTGC
TATAGAATCGCATAGAACATTCCGGCAGTTCGCAGGCATATGGCAATACC
AGCTGGTCACCGTGTGTGAACCGATGCTGGCTTAGGGCAGAGCCAGTCTT
GAACACCCGACCACAGAACTCGCACATATGGGTCTTCAAAGGCTTGCCAA
TGTCGTGAGCCTTGCTTTGGTGGTATTTCAGCGAGGCCTTGTGCCGGTAC
ATCCTGTTGCAGCCCTCCTCCTCGCAGACAAACCGCATGCCCACTTCCGA
GTGCTCTAGCTCGTGCTGCCTGAGGTTCTCGAATCGGTTGAAAGCTTCCT
CGCATCCGGGCTCAGTGCAATGATACAGCATGTGTCCCTGGTGTTCCTTC
TTGTGCAGAATCAAGCGTTTCTCCTCTCGAAACTCGTCGGCGCACAAGTC
GCACTTGTATGTGGTCAATGGCGGCTCTTCCAAGCTTTCTTTTTCGTTTC
CGGGGGTTGCTGGACATTTT
BS04410.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:47:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10147-PA | 1347 | CG10147-RA | 481..1347 | 883..17 | 4335 | 100 | Minus |
CG10147-PA | 1347 | CG10147-RA | 443..481 | 920..882 | 170 | 97.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:37:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10147-RB | 2198 | CG10147-RB | 526..1431 | 920..16 | 4490 | 99.8 | Minus |
CG10147-RA | 1768 | CG10147-RA | 526..1431 | 920..16 | 4490 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:37:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6486934..6487795 | 16..877 | 4310 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 14:37:13 has no hits.
BS04410.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:47:37 Download gff for
BS04410.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10147-PA | 443..1347 | 17..920 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:08:51 Download gff for
BS04410.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10147-PA | 443..1347 | 17..920 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:19:36 Download gff for
BS04410.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10147-RA | 526..1431 | 16..920 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:37:20 Download gff for
BS04410.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10147-RA | 526..1431 | 16..920 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:37:20 Download gff for
BS04410.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6486934..6487795 | 16..877 | 100 | <- | Plus |
3L | 6487856..6487899 | 878..920 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:19:36 Download gff for
BS04410.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6480034..6480895 | 16..877 | 100 | <- | Plus |
arm_3L | 6480956..6480999 | 878..920 | 95 | | Plus |
BS04410.5prime Sequence
926 bp (814 high quality bases) assembled on 2005-11-29
> BS04410.5prime
GAAGTTATCAGTCGACATGGGACACCTGGACAAATGCCGCGTATGCTCCA
GCGATGTGGCTAGAGACGACGAGGCCTACAATTTGCTGCACCATCCATAT
CTCGCCGTCAAATTTTCGGAGTGCACAAATTTGGTGGTGGATCCTGATGA
CCAGGATATTTTGCCCAGCGAAATTTGCTCGGAGTGCTACGAGCTTCTGG
AGAAGTTCCACTCCTTCCGAGCACTTTGCATTATAGCCGACAATAAGTGG
CGTTCTAAAAGTCTGGTAACTTGGAAGAAAATAGATCGCAGGAAACCTGT
TTACGAGGTCGATGAAGATGAGGAAGAGGAGCTGGAGCTGGAAGAACTTC
TATTGGAGCCGCCGGAGATGATTATATGTGATACCAATTTGAGTGCACAA
AATACCCCAATAGTCGCTGAACAGGCACCGCCAACCTTGGTATTCCATAC
CTTCACCGAAAATGTCCAGCAACCCCCGGAAACGGAAAAGAAAGCTTTGG
AAGAGCCGCCATTGACCACATACAAGTGCGACTTGTGCGCCGACGAGTTT
CGAGAGGAGAAACGCTTGATTCTGCACAAGAAGGAACACCAGGGACACAT
GCTGTATCATTGCACTGAGCCCGGATGCGAGGAAGCTTTCAACCGATTCG
AGAACCTCAGGCAGCACGAGCTAGAGCACTCGGAAGTGGGCATGCGGTTT
GTCTGCGAGGAGGAGGGCTGCAACAGGATGTACCGGCACAAGGCCTCGCT
GAAATACCACCAAAGCAAGGCTCACGACATTGGCAAGCCTTTGAAGACCC
ATATGTGCGAGTTCTGTGGTCGGGTGTTCAAGACTGGCTCTGCCCTAAGC
CAGCATCGGTTCACACACGGTGACCAGCTGGTATTGCCATATGCCTGCGA
ACTGCCCGGATGTTCTATGCAATTCT
BS04410.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:47:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10147-PA | 1347 | CG10147-RA | 1..910 | 17..926 | 4475 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:48:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10147-RB | 2198 | CG10147-RB | 84..993 | 17..926 | 4505 | 99.7 | Plus |
CG10147-RA | 1768 | CG10147-RA | 84..993 | 17..926 | 4505 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:48:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6487855..6488341 | 503..17 | 2435 | 100 | Minus |
3L | 28110227 | 3L | 6487372..6487795 | 926..503 | 2075 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:48:08 has no hits.
BS04410.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:47:38 Download gff for
BS04410.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10147-PA | 1..910 | 17..926 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:08:53 Download gff for
BS04410.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10147-PA | 1..910 | 17..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:10:55 Download gff for
BS04410.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10147-RA | 78..993 | 9..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:59:58 Download gff for
BS04410.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10147-RA | 78..993 | 9..926 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:59:58 Download gff for
BS04410.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6487372..6487795 | 503..926 | 99 | <- | Minus |
3L | 6487856..6488347 | 9..502 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:10:55 Download gff for
BS04410.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6480472..6480895 | 503..926 | 99 | <- | Minus |
arm_3L | 6480956..6481447 | 9..502 | 99 | | Minus |
BS04410.complete Sequence
1379 bp (1379 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ634932
> BS04410.complete
GAAGTTATCAGTCGACATGGGACACCTGGACAAATGCCGCGTATGCTCCA
GCGATGTGGCTAGAGACGACGAGGCCTACAATTTGCTGCACCATCCATAT
CTCGCCGTCAAATTTTCGGAGTGCACAAATTTGGTGGTGGATCCTGATGA
CCAGGATATTTTGCCCAGCGAAATTTGCTCGGAGTGCTACGAGCTTCTGG
AGAAGTTCCACTCCTTCCGAGCACTTTGCATTATAGCCGACAATAAGTGG
CGTTCTAAAAGTCTGGTAACTTGGAAGAAAATAGATCGCAGGAAACCTGT
TTACGAGGTCGATGAAGATGAGGAAGAGGAGCTGGAGCTGGAAGAACTTC
TATTGGAGCCGCCGGAGATGATTATATGTGATACCAATTTGAGTGCACAA
AATACCCCAATAGTCGCTGAACAGGCACCGCCAACCTTGGTATTCCATAC
CTTCACCGAAAATGTCCAGCAACCCCCGGAAACGGAAAAGAAAGCTTTGG
AAGAGCCGCCATTGACCACATACAAGTGCGACTTGTGCGCCGACGAGTTT
CGAGAGGAGAAACGCTTGATTCTGCACAAGAAGGAACACCAGGGACACAT
GCTGTATCATTGCACTGAGCCCGGATGCGAGGAAGCTTTCAACCGATTCG
AGAACCTCAGGCAGCACGAGCTAGAGCACTCGGAAGTGGGCATGCGGTTT
GTCTGCGAGGAGGAGGGCTGCAACAGGATGTACCGGCACAAGGCCTCGCT
GAAATACCACCAAAGCAAGGCTCACGACATTGGCAAGCCTTTGAAGACCC
ATATGTGCGAGTTCTGTGGTCGGGTGTTCAAGACTGGCTCTGCCCTAAGC
CAGCATCGGTTCACACACGGTGACCAGCTGGTATTGCCATATGCCTGCGA
ACTGCCGGAATGTTCTATGCGATTCTATAGCACGGAGAAACTCAAGATCC
ACATGATGCGTCACCAGGGCATAAAGAACTTTAGTTGCCCCTACTGTGGT
CTCAAGAAGACGACCAAAAACGAACTGCGACTGCATATCAACTATCATAC
TCTGGAAAGGACCTGGTCCTGCAAGGATTGCCCCAAAGTTTGCAACAGCT
CAACGAGTCTTAAGAAACATATCCGCGCAATCCACGAGAAGGCACGAGAT
TATGCCTGCAGCTATTGCGAAAAGAAATTTGCCACCACCGACACGCGAAA
ATATCACGAAATGACCCACACTGGCGAAAAGAACTTTGAGTGTCACGTTT
GCGGCAAGAAATTTATACAACCCTCTGCCTTGCGCACCCATCGCAAGGTC
CACGAATCGGGGGATAATCAGCAGACCGCTTGTGCTCTGCTGCAACTGAC
TAGCATGGGTTAAAAGCTTTCTAGACCAT
BS04410.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:11:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10147-RB | 1347 | CG10147-PB | 1..1347 | 17..1363 | 6735 | 100 | Plus |
CG10147-RA | 1347 | CG10147-PA | 1..1347 | 17..1363 | 6735 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:11:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10147-RB | 2198 | CG10147-RB | 84..1431 | 17..1364 | 6740 | 100 | Plus |
CG10147-RA | 1768 | CG10147-RA | 84..1431 | 17..1364 | 6740 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:11:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6486934..6487795 | 1364..503 | 4310 | 100 | Minus |
3L | 28110227 | 3L | 6487855..6488341 | 503..17 | 2435 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:11:23 has no hits.
BS04410.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:32:27 Download gff for
BS04410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10147-RA | 1..1347 | 17..1363 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:16:38 Download gff for
BS04410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10147-RA | 1..1347 | 17..1363 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:49:45 Download gff for
BS04410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10147-RA | 84..1428 | 17..1361 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:32:27 Download gff for
BS04410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10147-RA | 1..1347 | 17..1363 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:53:46 Download gff for
BS04410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10147-RA | 84..1428 | 17..1361 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:53:46 Download gff for
BS04410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6486937..6487795 | 503..1361 | 100 | <- | Minus |
3L | 6487856..6488341 | 17..502 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:49:45 Download gff for
BS04410.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6480037..6480895 | 503..1361 | 100 | <- | Minus |
arm_3L | 6480956..6481441 | 17..502 | 100 | | Minus |
BS04410.pep Sequence
Translation from 16 to 1362
> BS04410.pep
MGHLDKCRVCSSDVARDDEAYNLLHHPYLAVKFSECTNLVVDPDDQDILP
SEICSECYELLEKFHSFRALCIIADNKWRSKSLVTWKKIDRRKPVYEVDE
DEEEELELEELLLEPPEMIICDTNLSAQNTPIVAEQAPPTLVFHTFTENV
QQPPETEKKALEEPPLTTYKCDLCADEFREEKRLILHKKEHQGHMLYHCT
EPGCEEAFNRFENLRQHELEHSEVGMRFVCEEEGCNRMYRHKASLKYHQS
KAHDIGKPLKTHMCEFCGRVFKTGSALSQHRFTHGDQLVLPYACELPECS
MRFYSTEKLKIHMMRHQGIKNFSCPYCGLKKTTKNELRLHINYHTLERTW
SCKDCPKVCNSSTSLKKHIRAIHEKARDYACSYCEKKFATTDTRKYHEMT
HTGEKNFECHVCGKKFIQPSALRTHRKVHESGDNQQTACALLQLTSMG*
BS04410.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:39:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10147-PB | 448 | CG10147-PB | 1..448 | 1..448 | 2466 | 100 | Plus |
CG10147-PA | 448 | CG10147-PA | 1..448 | 1..448 | 2466 | 100 | Plus |
CG7386-PA | 662 | CG7386-PA | 24..457 | 21..430 | 557 | 30 | Plus |
D19B-PA | 774 | CG10270-PA | 13..519 | 7..437 | 556 | 28.1 | Plus |
CG10274-PB | 863 | CG10274-PB | 271..531 | 171..430 | 534 | 39.4 | Plus |
D19B-PA | 774 | CG10270-PA | 350..664 | 145..430 | 278 | 26.1 | Plus |
CG7386-PA | 662 | CG7386-PA | 321..612 | 169..430 | 271 | 24.7 | Plus |