Clone BS04410 Report

Search the DGRC for BS04410

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:44
Well:10
Vector:pDNR-Dual
Associated Gene/TranscriptCG10147-RA
Protein status:BS04410.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04410.3prime Sequence

920 bp (878 high quality bases) assembled on 2005-12-01

> BS04410.3prime
ATGGTCTAGAAAGCTTTTAACCCATGCTAGTCAGTTGCAGCAGAGCACAA
GCGGTCTGCTGATTATCCCCCGATTCGTGGACCTTGCGATGGGTGCGCAA
GGCAGAGGGTTGTATAAATTTCTTGCCGCAAACGTGACACTCAAAGTTCT
TTTCGCCAGTGTGGGTCATTTCGTGATATTTTCGCGTGTCGGTGGTGGCA
AATTTCTTTTCGCAATAGCTGCAGGCATAATCTCGTGCCTTCTCGTGGAT
TGCGCGGATATGTTTCTTAAGACTCGTTGAGCTGTTGCAAACTTTGGGGC
AATCCTTGCAGGACCAGGTCCTTTCCAGAGTATGATAGTTGATATGCAGT
CGCAGTTCGTTTTTGGTCGTCTTCTTGAGACCACAGTAGGGGCAACTAAA
GTTCTTTATGCCCTGGTGACGCATCATGTGGATCTTGAGTTTCTCCGTGC
TATAGAATCGCATAGAACATTCCGGCAGTTCGCAGGCATATGGCAATACC
AGCTGGTCACCGTGTGTGAACCGATGCTGGCTTAGGGCAGAGCCAGTCTT
GAACACCCGACCACAGAACTCGCACATATGGGTCTTCAAAGGCTTGCCAA
TGTCGTGAGCCTTGCTTTGGTGGTATTTCAGCGAGGCCTTGTGCCGGTAC
ATCCTGTTGCAGCCCTCCTCCTCGCAGACAAACCGCATGCCCACTTCCGA
GTGCTCTAGCTCGTGCTGCCTGAGGTTCTCGAATCGGTTGAAAGCTTCCT
CGCATCCGGGCTCAGTGCAATGATACAGCATGTGTCCCTGGTGTTCCTTC
TTGTGCAGAATCAAGCGTTTCTCCTCTCGAAACTCGTCGGCGCACAAGTC
GCACTTGTATGTGGTCAATGGCGGCTCTTCCAAGCTTTCTTTTTCGTTTC
CGGGGGTTGCTGGACATTTT

BS04410.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:47:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG10147-PA 1347 CG10147-RA 481..1347 883..17 4335 100 Minus
CG10147-PA 1347 CG10147-RA 443..481 920..882 170 97.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:37:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG10147-RB 2198 CG10147-RB 526..1431 920..16 4490 99.8 Minus
CG10147-RA 1768 CG10147-RA 526..1431 920..16 4490 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:37:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6486934..6487795 16..877 4310 100 Plus
Blast to na_te.dros performed on 2015-01-31 14:37:13 has no hits.

BS04410.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:47:37 Download gff for BS04410.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10147-PA 443..1347 17..920 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:08:51 Download gff for BS04410.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10147-PA 443..1347 17..920 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:19:36 Download gff for BS04410.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10147-RA 526..1431 16..920 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:37:20 Download gff for BS04410.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10147-RA 526..1431 16..920 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:37:20 Download gff for BS04410.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 6486934..6487795 16..877 100 <- Plus
3L 6487856..6487899 878..920 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:19:36 Download gff for BS04410.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6480034..6480895 16..877 100 <- Plus
arm_3L 6480956..6480999 878..920 95   Plus

BS04410.5prime Sequence

926 bp (814 high quality bases) assembled on 2005-11-29

> BS04410.5prime
GAAGTTATCAGTCGACATGGGACACCTGGACAAATGCCGCGTATGCTCCA
GCGATGTGGCTAGAGACGACGAGGCCTACAATTTGCTGCACCATCCATAT
CTCGCCGTCAAATTTTCGGAGTGCACAAATTTGGTGGTGGATCCTGATGA
CCAGGATATTTTGCCCAGCGAAATTTGCTCGGAGTGCTACGAGCTTCTGG
AGAAGTTCCACTCCTTCCGAGCACTTTGCATTATAGCCGACAATAAGTGG
CGTTCTAAAAGTCTGGTAACTTGGAAGAAAATAGATCGCAGGAAACCTGT
TTACGAGGTCGATGAAGATGAGGAAGAGGAGCTGGAGCTGGAAGAACTTC
TATTGGAGCCGCCGGAGATGATTATATGTGATACCAATTTGAGTGCACAA
AATACCCCAATAGTCGCTGAACAGGCACCGCCAACCTTGGTATTCCATAC
CTTCACCGAAAATGTCCAGCAACCCCCGGAAACGGAAAAGAAAGCTTTGG
AAGAGCCGCCATTGACCACATACAAGTGCGACTTGTGCGCCGACGAGTTT
CGAGAGGAGAAACGCTTGATTCTGCACAAGAAGGAACACCAGGGACACAT
GCTGTATCATTGCACTGAGCCCGGATGCGAGGAAGCTTTCAACCGATTCG
AGAACCTCAGGCAGCACGAGCTAGAGCACTCGGAAGTGGGCATGCGGTTT
GTCTGCGAGGAGGAGGGCTGCAACAGGATGTACCGGCACAAGGCCTCGCT
GAAATACCACCAAAGCAAGGCTCACGACATTGGCAAGCCTTTGAAGACCC
ATATGTGCGAGTTCTGTGGTCGGGTGTTCAAGACTGGCTCTGCCCTAAGC
CAGCATCGGTTCACACACGGTGACCAGCTGGTATTGCCATATGCCTGCGA
ACTGCCCGGATGTTCTATGCAATTCT

BS04410.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:47:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG10147-PA 1347 CG10147-RA 1..910 17..926 4475 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:48:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG10147-RB 2198 CG10147-RB 84..993 17..926 4505 99.7 Plus
CG10147-RA 1768 CG10147-RA 84..993 17..926 4505 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:48:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6487855..6488341 503..17 2435 100 Minus
3L 28110227 3L 6487372..6487795 926..503 2075 99.3 Minus
Blast to na_te.dros performed on 2015-02-11 23:48:08 has no hits.

BS04410.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:47:38 Download gff for BS04410.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10147-PA 1..910 17..926 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:08:53 Download gff for BS04410.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10147-PA 1..910 17..926 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:10:55 Download gff for BS04410.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10147-RA 78..993 9..926 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:59:58 Download gff for BS04410.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10147-RA 78..993 9..926 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:59:58 Download gff for BS04410.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 6487372..6487795 503..926 99 <- Minus
3L 6487856..6488347 9..502 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:10:55 Download gff for BS04410.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6480472..6480895 503..926 99 <- Minus
arm_3L 6480956..6481447 9..502 99   Minus

BS04410.complete Sequence

1379 bp (1379 high quality bases) assembled on 2005-09-13

GenBank Submission: FJ634932

> BS04410.complete
GAAGTTATCAGTCGACATGGGACACCTGGACAAATGCCGCGTATGCTCCA
GCGATGTGGCTAGAGACGACGAGGCCTACAATTTGCTGCACCATCCATAT
CTCGCCGTCAAATTTTCGGAGTGCACAAATTTGGTGGTGGATCCTGATGA
CCAGGATATTTTGCCCAGCGAAATTTGCTCGGAGTGCTACGAGCTTCTGG
AGAAGTTCCACTCCTTCCGAGCACTTTGCATTATAGCCGACAATAAGTGG
CGTTCTAAAAGTCTGGTAACTTGGAAGAAAATAGATCGCAGGAAACCTGT
TTACGAGGTCGATGAAGATGAGGAAGAGGAGCTGGAGCTGGAAGAACTTC
TATTGGAGCCGCCGGAGATGATTATATGTGATACCAATTTGAGTGCACAA
AATACCCCAATAGTCGCTGAACAGGCACCGCCAACCTTGGTATTCCATAC
CTTCACCGAAAATGTCCAGCAACCCCCGGAAACGGAAAAGAAAGCTTTGG
AAGAGCCGCCATTGACCACATACAAGTGCGACTTGTGCGCCGACGAGTTT
CGAGAGGAGAAACGCTTGATTCTGCACAAGAAGGAACACCAGGGACACAT
GCTGTATCATTGCACTGAGCCCGGATGCGAGGAAGCTTTCAACCGATTCG
AGAACCTCAGGCAGCACGAGCTAGAGCACTCGGAAGTGGGCATGCGGTTT
GTCTGCGAGGAGGAGGGCTGCAACAGGATGTACCGGCACAAGGCCTCGCT
GAAATACCACCAAAGCAAGGCTCACGACATTGGCAAGCCTTTGAAGACCC
ATATGTGCGAGTTCTGTGGTCGGGTGTTCAAGACTGGCTCTGCCCTAAGC
CAGCATCGGTTCACACACGGTGACCAGCTGGTATTGCCATATGCCTGCGA
ACTGCCGGAATGTTCTATGCGATTCTATAGCACGGAGAAACTCAAGATCC
ACATGATGCGTCACCAGGGCATAAAGAACTTTAGTTGCCCCTACTGTGGT
CTCAAGAAGACGACCAAAAACGAACTGCGACTGCATATCAACTATCATAC
TCTGGAAAGGACCTGGTCCTGCAAGGATTGCCCCAAAGTTTGCAACAGCT
CAACGAGTCTTAAGAAACATATCCGCGCAATCCACGAGAAGGCACGAGAT
TATGCCTGCAGCTATTGCGAAAAGAAATTTGCCACCACCGACACGCGAAA
ATATCACGAAATGACCCACACTGGCGAAAAGAACTTTGAGTGTCACGTTT
GCGGCAAGAAATTTATACAACCCTCTGCCTTGCGCACCCATCGCAAGGTC
CACGAATCGGGGGATAATCAGCAGACCGCTTGTGCTCTGCTGCAACTGAC
TAGCATGGGTTAAAAGCTTTCTAGACCAT

BS04410.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:11:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG10147-RB 1347 CG10147-PB 1..1347 17..1363 6735 100 Plus
CG10147-RA 1347 CG10147-PA 1..1347 17..1363 6735 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:11:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG10147-RB 2198 CG10147-RB 84..1431 17..1364 6740 100 Plus
CG10147-RA 1768 CG10147-RA 84..1431 17..1364 6740 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:11:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6486934..6487795 1364..503 4310 100 Minus
3L 28110227 3L 6487855..6488341 503..17 2435 100 Minus
Blast to na_te.dros performed on 2014-11-26 22:11:23 has no hits.

BS04410.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:32:27 Download gff for BS04410.complete
Subject Subject Range Query Range Percent Splice Strand
CG10147-RA 1..1347 17..1363 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:16:38 Download gff for BS04410.complete
Subject Subject Range Query Range Percent Splice Strand
CG10147-RA 1..1347 17..1363 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:49:45 Download gff for BS04410.complete
Subject Subject Range Query Range Percent Splice Strand
CG10147-RA 84..1428 17..1361 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:32:27 Download gff for BS04410.complete
Subject Subject Range Query Range Percent Splice Strand
CG10147-RA 1..1347 17..1363 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:53:46 Download gff for BS04410.complete
Subject Subject Range Query Range Percent Splice Strand
CG10147-RA 84..1428 17..1361 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:53:46 Download gff for BS04410.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6486937..6487795 503..1361 100 <- Minus
3L 6487856..6488341 17..502 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:49:45 Download gff for BS04410.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6480037..6480895 503..1361 100 <- Minus
arm_3L 6480956..6481441 17..502 100   Minus

BS04410.pep Sequence

Translation from 16 to 1362

> BS04410.pep
MGHLDKCRVCSSDVARDDEAYNLLHHPYLAVKFSECTNLVVDPDDQDILP
SEICSECYELLEKFHSFRALCIIADNKWRSKSLVTWKKIDRRKPVYEVDE
DEEEELELEELLLEPPEMIICDTNLSAQNTPIVAEQAPPTLVFHTFTENV
QQPPETEKKALEEPPLTTYKCDLCADEFREEKRLILHKKEHQGHMLYHCT
EPGCEEAFNRFENLRQHELEHSEVGMRFVCEEEGCNRMYRHKASLKYHQS
KAHDIGKPLKTHMCEFCGRVFKTGSALSQHRFTHGDQLVLPYACELPECS
MRFYSTEKLKIHMMRHQGIKNFSCPYCGLKKTTKNELRLHINYHTLERTW
SCKDCPKVCNSSTSLKKHIRAIHEKARDYACSYCEKKFATTDTRKYHEMT
HTGEKNFECHVCGKKFIQPSALRTHRKVHESGDNQQTACALLQLTSMG*

BS04410.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:39:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG10147-PB 448 CG10147-PB 1..448 1..448 2466 100 Plus
CG10147-PA 448 CG10147-PA 1..448 1..448 2466 100 Plus
CG7386-PA 662 CG7386-PA 24..457 21..430 557 30 Plus
D19B-PA 774 CG10270-PA 13..519 7..437 556 28.1 Plus
CG10274-PB 863 CG10274-PB 271..531 171..430 534 39.4 Plus
D19B-PA 774 CG10270-PA 350..664 145..430 278 26.1 Plus
CG7386-PA 662 CG7386-PA 321..612 169..430 271 24.7 Plus