Clone BS04411 Report

Search the DGRC for BS04411

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:44
Well:11
Vector:pDNR-Dual
Associated Gene/Transcriptnau-RB
Protein status:BS04411.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04411.3prime Sequence

937 bp (748 high quality bases) assembled on 2005-12-01

> BS04411.3prime
ATGGTCTAGAAAGCTTCTAAGTGCTGCACTTCCGTTTGAAGTTCACGTGC
AGAGAAGTGGGTGCAGTTGCTCCGGATGAGGGCGGCGATTGGGTATCTGA
AGCGGAGGGCGTGGCCTTATTTTGAATGGGACTCGTGGTGCTCTTATTGA
TGCTCTGAACAATCAGATTTAGACAGTCCAAACTGGAGCCATTGGCATTG
CCATCAAAGTCATATTTCTCCATATGTTTGTTGTAAAAACTAAGTTTATC
TTCTAGATAAGCGCCAGCATAGGAGCTCAGATAATCGGACTGGCAGCTTT
TGCCGCTCAAACTGGGCGCCAGGTTGTCGCCATCGCGTGTGGTACTGGAT
TCCTGTAGCAGATCCTCCAGGCTCTCGATATACTCGATGGCATTGCGCAA
TATCTCAACCTTCGGCAGGCGCTGGTTGGGATTGGATGAAGTGCGTCGCT
TGAGGATCTCGAAGGCCTCGTTAACCTTTCGCAGTCTCCGGCGTTCCCTC
ATAGTGGCCGCTTTCCGACGGTCCACGGTGACGCTCTTCTTTTTGCACGC
CTTGCAGGCCCAGGTGAGGCATGGTCTGGAGGATTGGGCGGAGGAGCAGA
CGAGGGGCGCCAGGACGTGCTCCTCGGAGCTGAGACTGCTGTTCTCGTCA
TCGTAGTCGGTGGTGTAGATGGGCGACGGTGTCATATTCATGCCCAATGG
CTTGTCCAGCTCAACCGGATTATGATTCGCATGACTGTAGTTGCAAGACG
AACCCGATCCGTTGGCTGAGATGGAAGCCGCTCCACCATTTCCCGCACTC
GCATCACCGACGGCATTGAAGCGGCTAAAGAAATTCTGCAGTGTCTGGTG
TGGATTCTGGCCGGGATGGGCTATCGGATTCTGTTGGCTATAGGCGCTAA
ATCCGTATCCAGGATGTGTCGGCTGACCATAGCCTTT

BS04411.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:47:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG10250-PA 999 nau-RA 70..793 934..211 3620 100 Minus
CG10250-PA 999 nau-RA 805..999 211..17 975 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:55:48
Subject Length Description Subject Range Query Range Score Percent Strand
nau-RB 1520 CG10250-RB 471..1388 934..17 4590 100 Minus
nau-RA 1532 CG10250-RA 471..1400 934..17 4460 98.7 Minus
CG10300-RA 1484 CG10300-RA 1117..1311 17..211 975 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:55:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23717427..23717887 474..934 2305 100 Plus
3R 32079331 3R 23712946..23713140 17..211 975 100 Plus
3R 32079331 3R 23716500..23716625 352..477 630 100 Plus
3R 32079331 3R 23716363..23716439 278..354 385 100 Plus
3R 32079331 3R 23713208..23713275 211..278 340 100 Plus
Blast to na_te.dros performed on 2015-02-09 02:55:44 has no hits.

BS04411.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:47:40 Download gff for BS04411.3prime
Subject Subject Range Query Range Percent Splice Strand
nau-PA 67..999 17..937 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:08:54 Download gff for BS04411.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10250-PA 67..999 17..937 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 06:10:01 Download gff for BS04411.3prime
Subject Subject Range Query Range Percent Splice Strand
nau-RB 468..1396 6..937 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:19:55 Download gff for BS04411.3prime
Subject Subject Range Query Range Percent Splice Strand
nau-RB 468..1396 6..937 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:19:55 Download gff for BS04411.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 23716501..23716623 353..475 100 <- Plus
3R 23716363..23716437 278..352 100 <- Plus
3R 23712938..23713139 6..210 97 <- Plus
3R 23713208..23713274 211..277 100 <- Plus
3R 23717429..23717890 476..937 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 06:10:01 Download gff for BS04411.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19538660..19538861 6..210 97 <- Plus
arm_3R 19538930..19538996 211..277 100 <- Plus
arm_3R 19542085..19542159 278..352 100 <- Plus
arm_3R 19542223..19542345 353..475 100 <- Plus
arm_3R 19543151..19543612 476..937 99   Plus

BS04411.5prime Sequence

766 bp (717 high quality bases) assembled on 2005-12-01

> BS04411.5prime
GAAGTTATCAGTCGACATGACCAAGTATAATAGTGGCAGCAGTGAAATGC
CTGCGGCTCAAACCATCAAGCAGGAGTACCACAATGGCTATGGTCAGCCG
ACACATCCTGGATACGGATTTAGCGCCTATAGCCAACAGAATCCGATAGC
CCATCCCGGCCAGAATCCACACCAGACACTGCAGAATTTCTTTAGCCGCT
TCAATGCCGTCGGTGATGCGAGTGCGGGAAATGGTGGAGCGGCTTCCATC
TCAGCCAACGGATCGGGTTCGTCTTGCAACTACAGTCATGCGAATCATAA
TCCGGTTGAGCTGGACAAGCCATTGGGCATGAATATGACACCGTCGCCCA
TCTACACCACCGACTACGATGACGAGAACAGCAGTCTCAGCTCCGAGGAG
CACGTCCTGGCGCCCCTCGTCTGCTCCTCCGCCCAATCCTCCAGACCATG
CCTCACCTGGGCCTGCAAGGCGTGCAAAAAGAAGAGCGTCACCGTGGACC
GTCGGAAAGCGGCCACTATGAGGGAACGCCGGAGACTGCGAAAGGTTAAC
GAGGCCTTCGAGATCCTCAAGCGACGCACTTCATCCAATCCCAACCAGCG
CCTGCCGAAGGTTGAGATATTGCGCAATGCCATCGAGTATATCGAGAGCC
TGGAGGATCTGCTACAGGAATCCAGTACCACACGCGATGGCGACAACCTG
GCGCCCAGTTTGAGCGGCAAAAGCTGCCAGTCCGATTATCTGAGCTCCTA
TGCTGGCGCTTATCTA

BS04411.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:47:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG10250-PA 999 nau-RA 1..750 17..766 3750 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:30:11
Subject Length Description Subject Range Query Range Score Percent Strand
nau-RB 1520 CG10250-RB 402..1151 17..766 3750 100 Plus
nau-RA 1532 CG10250-RA 402..1151 17..766 3750 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:30:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23717427..23717956 546..17 2650 100 Minus
3R 32079331 3R 23716500..23716625 668..543 630 100 Minus
3R 32079331 3R 23716363..23716439 742..666 385 100 Minus
Blast to na_te.dros performed on 2015-02-10 20:30:09 has no hits.

BS04411.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:47:41 Download gff for BS04411.5prime
Subject Subject Range Query Range Percent Splice Strand
nau-PA 1..749 17..765 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:08:55 Download gff for BS04411.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10250-PA 1..749 17..765 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:48:44 Download gff for BS04411.5prime
Subject Subject Range Query Range Percent Splice Strand
nau-RA 394..1150 10..765 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:48:42 Download gff for BS04411.5prime
Subject Subject Range Query Range Percent Splice Strand
nau-RA 394..1150 10..765 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:48:42 Download gff for BS04411.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23713252..23713274 743..765 100 <- Minus
3R 23716363..23716437 668..742 100 <- Minus
3R 23716501..23716623 545..667 100 <- Minus
3R 23717429..23717964 10..544 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:48:44 Download gff for BS04411.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19538974..19538996 743..765 100 <- Minus
arm_3R 19542085..19542159 668..742 100 <- Minus
arm_3R 19542223..19542345 545..667 100 <- Minus
arm_3R 19543151..19543686 10..544 99   Minus

BS04411.complete Sequence

1019 bp (1019 high quality bases) assembled on 2005-09-13

GenBank Submission: KX799719

> BS04411.complete
GAAGTTATCAGTCGACATGACCAAGTATAATAGTGGCAGCAGTGAAATGC
CTGCGGCTCAAACCATCAAGCAGGAGTACCACAATGGCTATGGTCAGCCG
ACACATCCTGGATACGGATTTAGCGCCTATAGCCAACAGAATCCGATAGC
CCATCCCGGCCAGAATCCACACCAGACACTGCAGAATTTCTTTAGCCGCT
TCAATGCCGTCGGTGATGCGAGTGCGGGAAATGGTGGAGCGGCTTCCATC
TCAGCCAACGGATCGGGTTCGTCTTGCAACTACAGTCATGCGAATCATAA
TCCGGTTGAGCTGGACAAGCCATTGGGCATGAATATGACACCGTCGCCCA
TCTACACCACCGACTACGATGACGAGAACAGCAGTCTCAGCTCCGAGGAG
CACGTCCTGGCGCCCCTCGTCTGCTCCTCCGCCCAATCCTCCAGACCATG
CCTCACCTGGGCCTGCAAGGCGTGCAAAAAGAAGAGCGTCACCGTGGACC
GTCGGAAAGCGGCCACTATGAGGGAACGCCGGAGACTGCGAAAGGTTAAC
GAGGCCTTCGAGATCCTCAAGCGACGCACTTCATCCAATCCCAACCAGCG
CCTGCCGAAGGTTGAGATATTGCGCAATGCCATCGAGTATATCGAGAGCC
TGGAGGATCTGCTACAGGAATCCAGTACCACACGCGATGGCGACAACCTG
GCGCCCAGTTTGAGCGGCAAAAGCTGCCAGTCCGATTATCTGAGCTCCTA
TGCTGGCGCTTATCTAGAAGATAAACTTAGTTTTTACAACAAACATATGG
AGAAATATGACTTTGATGGCAATGCCAATGGCTCCAGTTTGGACTGTCTA
AATCTGATTGTTCAGAGCATCAATAAGAGCACCACGAGTCCCATTCAAAA
TAAGGCCACGCCCTCCGCTTCAGATACCCAATCGCCGCCCTCATCCGGAG
CAACTGCACCCACTTCTCTGCACGTGAACTTCAAACGGAAGTGCAGCACT
TAGAAGCTTTCTAGACCAT

BS04411.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:29:02
Subject Length Description Subject Range Query Range Score Percent Strand
nau-RB 987 CG10250-PB 1..987 17..1003 4935 100 Plus
nau-RA 999 CG10250-PA 1..999 17..1003 4780 98.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:29:04
Subject Length Description Subject Range Query Range Score Percent Strand
nau-RB 1520 CG10250-RB 402..1388 17..1003 4935 100 Plus
nau-RA 1532 CG10250-RA 402..1400 17..1003 4780 98.8 Plus
CG10300-RA 1484 CG10300-RA 1117..1311 1003..809 975 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:29:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23717427..23717956 546..17 2650 100 Minus
3R 32079331 3R 23712946..23713140 1003..809 975 100 Minus
3R 32079331 3R 23716500..23716625 668..543 630 100 Minus
3R 32079331 3R 23716363..23716439 742..666 385 100 Minus
3R 32079331 3R 23713208..23713275 809..742 340 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:29:01 has no hits.

BS04411.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:32:28 Download gff for BS04411.complete
Subject Subject Range Query Range Percent Splice Strand
nau-RA 1..999 17..1003 98   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:16:40 Download gff for BS04411.complete
Subject Subject Range Query Range Percent Splice Strand
nau-RA 394..1408 10..1014 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:37 Download gff for BS04411.complete
Subject Subject Range Query Range Percent Splice Strand
nau-RB 402..1388 17..1003 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:32:28 Download gff for BS04411.complete
Subject Subject Range Query Range Percent Splice Strand
nau-RA 394..1408 10..1014 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:19:30 Download gff for BS04411.complete
Subject Subject Range Query Range Percent Splice Strand
nau-RB 402..1388 17..1003 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:19:30 Download gff for BS04411.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23712946..23713139 810..1003 100 <- Minus
3R 23713208..23713274 743..809 100 <- Minus
3R 23716363..23716437 668..742 100 <- Minus
3R 23716501..23716623 545..667 100 <- Minus
3R 23717429..23717956 17..544 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:37 Download gff for BS04411.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19538668..19538861 810..1003 100 <- Minus
arm_3R 19538930..19538996 743..809 100 <- Minus
arm_3R 19542085..19542159 668..742 100 <- Minus
arm_3R 19542223..19542345 545..667 100 <- Minus
arm_3R 19543151..19543678 17..544 100   Minus

BS04411.pep Sequence

Translation from 16 to 1002

> BS04411.pep
MTKYNSGSSEMPAAQTIKQEYHNGYGQPTHPGYGFSAYSQQNPIAHPGQN
PHQTLQNFFSRFNAVGDASAGNGGAASISANGSGSSCNYSHANHNPVELD
KPLGMNMTPSPIYTTDYDDENSSLSSEEHVLAPLVCSSAQSSRPCLTWAC
KACKKKSVTVDRRKAATMRERRRLRKVNEAFEILKRRTSSNPNQRLPKVE
ILRNAIEYIESLEDLLQESSTTRDGDNLAPSLSGKSCQSDYLSSYAGAYL
EDKLSFYNKHMEKYDFDGNANGSSLDCLNLIVQSINKSTTSPIQNKATPS
ASDTQSPPSSGATAPTSLHVNFKRKCST*

BS04411.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:07:28
Subject Length Description Subject Range Query Range Score Percent Strand
nau-PB 328 CG10250-PB 1..328 1..328 1722 100 Plus
nau-PA 332 CG10250-PA 1..332 1..328 1707 98.8 Plus