Clone Sequence Records
BS04411.3prime Sequence
937 bp (748 high quality bases) assembled on 2005-12-01
> BS04411.3prime
ATGGTCTAGAAAGCTTCTAAGTGCTGCACTTCCGTTTGAAGTTCACGTGC
AGAGAAGTGGGTGCAGTTGCTCCGGATGAGGGCGGCGATTGGGTATCTGA
AGCGGAGGGCGTGGCCTTATTTTGAATGGGACTCGTGGTGCTCTTATTGA
TGCTCTGAACAATCAGATTTAGACAGTCCAAACTGGAGCCATTGGCATTG
CCATCAAAGTCATATTTCTCCATATGTTTGTTGTAAAAACTAAGTTTATC
TTCTAGATAAGCGCCAGCATAGGAGCTCAGATAATCGGACTGGCAGCTTT
TGCCGCTCAAACTGGGCGCCAGGTTGTCGCCATCGCGTGTGGTACTGGAT
TCCTGTAGCAGATCCTCCAGGCTCTCGATATACTCGATGGCATTGCGCAA
TATCTCAACCTTCGGCAGGCGCTGGTTGGGATTGGATGAAGTGCGTCGCT
TGAGGATCTCGAAGGCCTCGTTAACCTTTCGCAGTCTCCGGCGTTCCCTC
ATAGTGGCCGCTTTCCGACGGTCCACGGTGACGCTCTTCTTTTTGCACGC
CTTGCAGGCCCAGGTGAGGCATGGTCTGGAGGATTGGGCGGAGGAGCAGA
CGAGGGGCGCCAGGACGTGCTCCTCGGAGCTGAGACTGCTGTTCTCGTCA
TCGTAGTCGGTGGTGTAGATGGGCGACGGTGTCATATTCATGCCCAATGG
CTTGTCCAGCTCAACCGGATTATGATTCGCATGACTGTAGTTGCAAGACG
AACCCGATCCGTTGGCTGAGATGGAAGCCGCTCCACCATTTCCCGCACTC
GCATCACCGACGGCATTGAAGCGGCTAAAGAAATTCTGCAGTGTCTGGTG
TGGATTCTGGCCGGGATGGGCTATCGGATTCTGTTGGCTATAGGCGCTAA
ATCCGTATCCAGGATGTGTCGGCTGACCATAGCCTTT
BS04411.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:47:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10250-PA | 999 | nau-RA | 70..793 | 934..211 | 3620 | 100 | Minus |
CG10250-PA | 999 | nau-RA | 805..999 | 211..17 | 975 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:55:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nau-RB | 1520 | CG10250-RB | 471..1388 | 934..17 | 4590 | 100 | Minus |
nau-RA | 1532 | CG10250-RA | 471..1400 | 934..17 | 4460 | 98.7 | Minus |
CG10300-RA | 1484 | CG10300-RA | 1117..1311 | 17..211 | 975 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:55:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23717427..23717887 | 474..934 | 2305 | 100 | Plus |
3R | 32079331 | 3R | 23712946..23713140 | 17..211 | 975 | 100 | Plus |
3R | 32079331 | 3R | 23716500..23716625 | 352..477 | 630 | 100 | Plus |
3R | 32079331 | 3R | 23716363..23716439 | 278..354 | 385 | 100 | Plus |
3R | 32079331 | 3R | 23713208..23713275 | 211..278 | 340 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 02:55:44 has no hits.
BS04411.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:47:40 Download gff for
BS04411.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nau-PA | 67..999 | 17..937 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:08:54 Download gff for
BS04411.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10250-PA | 67..999 | 17..937 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 06:10:01 Download gff for
BS04411.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nau-RB | 468..1396 | 6..937 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:19:55 Download gff for
BS04411.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nau-RB | 468..1396 | 6..937 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:19:55 Download gff for
BS04411.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23716501..23716623 | 353..475 | 100 | <- | Plus |
3R | 23716363..23716437 | 278..352 | 100 | <- | Plus |
3R | 23712938..23713139 | 6..210 | 97 | <- | Plus |
3R | 23713208..23713274 | 211..277 | 100 | <- | Plus |
3R | 23717429..23717890 | 476..937 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 06:10:01 Download gff for
BS04411.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19538660..19538861 | 6..210 | 97 | <- | Plus |
arm_3R | 19538930..19538996 | 211..277 | 100 | <- | Plus |
arm_3R | 19542085..19542159 | 278..352 | 100 | <- | Plus |
arm_3R | 19542223..19542345 | 353..475 | 100 | <- | Plus |
arm_3R | 19543151..19543612 | 476..937 | 99 | | Plus |
BS04411.5prime Sequence
766 bp (717 high quality bases) assembled on 2005-12-01
> BS04411.5prime
GAAGTTATCAGTCGACATGACCAAGTATAATAGTGGCAGCAGTGAAATGC
CTGCGGCTCAAACCATCAAGCAGGAGTACCACAATGGCTATGGTCAGCCG
ACACATCCTGGATACGGATTTAGCGCCTATAGCCAACAGAATCCGATAGC
CCATCCCGGCCAGAATCCACACCAGACACTGCAGAATTTCTTTAGCCGCT
TCAATGCCGTCGGTGATGCGAGTGCGGGAAATGGTGGAGCGGCTTCCATC
TCAGCCAACGGATCGGGTTCGTCTTGCAACTACAGTCATGCGAATCATAA
TCCGGTTGAGCTGGACAAGCCATTGGGCATGAATATGACACCGTCGCCCA
TCTACACCACCGACTACGATGACGAGAACAGCAGTCTCAGCTCCGAGGAG
CACGTCCTGGCGCCCCTCGTCTGCTCCTCCGCCCAATCCTCCAGACCATG
CCTCACCTGGGCCTGCAAGGCGTGCAAAAAGAAGAGCGTCACCGTGGACC
GTCGGAAAGCGGCCACTATGAGGGAACGCCGGAGACTGCGAAAGGTTAAC
GAGGCCTTCGAGATCCTCAAGCGACGCACTTCATCCAATCCCAACCAGCG
CCTGCCGAAGGTTGAGATATTGCGCAATGCCATCGAGTATATCGAGAGCC
TGGAGGATCTGCTACAGGAATCCAGTACCACACGCGATGGCGACAACCTG
GCGCCCAGTTTGAGCGGCAAAAGCTGCCAGTCCGATTATCTGAGCTCCTA
TGCTGGCGCTTATCTA
BS04411.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:47:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10250-PA | 999 | nau-RA | 1..750 | 17..766 | 3750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:30:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nau-RB | 1520 | CG10250-RB | 402..1151 | 17..766 | 3750 | 100 | Plus |
nau-RA | 1532 | CG10250-RA | 402..1151 | 17..766 | 3750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:30:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23717427..23717956 | 546..17 | 2650 | 100 | Minus |
3R | 32079331 | 3R | 23716500..23716625 | 668..543 | 630 | 100 | Minus |
3R | 32079331 | 3R | 23716363..23716439 | 742..666 | 385 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:30:09 has no hits.
BS04411.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:47:41 Download gff for
BS04411.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nau-PA | 1..749 | 17..765 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:08:55 Download gff for
BS04411.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10250-PA | 1..749 | 17..765 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:48:44 Download gff for
BS04411.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nau-RA | 394..1150 | 10..765 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:48:42 Download gff for
BS04411.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nau-RA | 394..1150 | 10..765 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:48:42 Download gff for
BS04411.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23713252..23713274 | 743..765 | 100 | <- | Minus |
3R | 23716363..23716437 | 668..742 | 100 | <- | Minus |
3R | 23716501..23716623 | 545..667 | 100 | <- | Minus |
3R | 23717429..23717964 | 10..544 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:48:44 Download gff for
BS04411.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19538974..19538996 | 743..765 | 100 | <- | Minus |
arm_3R | 19542085..19542159 | 668..742 | 100 | <- | Minus |
arm_3R | 19542223..19542345 | 545..667 | 100 | <- | Minus |
arm_3R | 19543151..19543686 | 10..544 | 99 | | Minus |
BS04411.complete Sequence
1019 bp (1019 high quality bases) assembled on 2005-09-13
GenBank Submission: KX799719
> BS04411.complete
GAAGTTATCAGTCGACATGACCAAGTATAATAGTGGCAGCAGTGAAATGC
CTGCGGCTCAAACCATCAAGCAGGAGTACCACAATGGCTATGGTCAGCCG
ACACATCCTGGATACGGATTTAGCGCCTATAGCCAACAGAATCCGATAGC
CCATCCCGGCCAGAATCCACACCAGACACTGCAGAATTTCTTTAGCCGCT
TCAATGCCGTCGGTGATGCGAGTGCGGGAAATGGTGGAGCGGCTTCCATC
TCAGCCAACGGATCGGGTTCGTCTTGCAACTACAGTCATGCGAATCATAA
TCCGGTTGAGCTGGACAAGCCATTGGGCATGAATATGACACCGTCGCCCA
TCTACACCACCGACTACGATGACGAGAACAGCAGTCTCAGCTCCGAGGAG
CACGTCCTGGCGCCCCTCGTCTGCTCCTCCGCCCAATCCTCCAGACCATG
CCTCACCTGGGCCTGCAAGGCGTGCAAAAAGAAGAGCGTCACCGTGGACC
GTCGGAAAGCGGCCACTATGAGGGAACGCCGGAGACTGCGAAAGGTTAAC
GAGGCCTTCGAGATCCTCAAGCGACGCACTTCATCCAATCCCAACCAGCG
CCTGCCGAAGGTTGAGATATTGCGCAATGCCATCGAGTATATCGAGAGCC
TGGAGGATCTGCTACAGGAATCCAGTACCACACGCGATGGCGACAACCTG
GCGCCCAGTTTGAGCGGCAAAAGCTGCCAGTCCGATTATCTGAGCTCCTA
TGCTGGCGCTTATCTAGAAGATAAACTTAGTTTTTACAACAAACATATGG
AGAAATATGACTTTGATGGCAATGCCAATGGCTCCAGTTTGGACTGTCTA
AATCTGATTGTTCAGAGCATCAATAAGAGCACCACGAGTCCCATTCAAAA
TAAGGCCACGCCCTCCGCTTCAGATACCCAATCGCCGCCCTCATCCGGAG
CAACTGCACCCACTTCTCTGCACGTGAACTTCAAACGGAAGTGCAGCACT
TAGAAGCTTTCTAGACCAT
BS04411.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:29:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nau-RB | 987 | CG10250-PB | 1..987 | 17..1003 | 4935 | 100 | Plus |
nau-RA | 999 | CG10250-PA | 1..999 | 17..1003 | 4780 | 98.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:29:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nau-RB | 1520 | CG10250-RB | 402..1388 | 17..1003 | 4935 | 100 | Plus |
nau-RA | 1532 | CG10250-RA | 402..1400 | 17..1003 | 4780 | 98.8 | Plus |
CG10300-RA | 1484 | CG10300-RA | 1117..1311 | 1003..809 | 975 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:29:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23717427..23717956 | 546..17 | 2650 | 100 | Minus |
3R | 32079331 | 3R | 23712946..23713140 | 1003..809 | 975 | 100 | Minus |
3R | 32079331 | 3R | 23716500..23716625 | 668..543 | 630 | 100 | Minus |
3R | 32079331 | 3R | 23716363..23716439 | 742..666 | 385 | 100 | Minus |
3R | 32079331 | 3R | 23713208..23713275 | 809..742 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:29:01 has no hits.
BS04411.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:32:28 Download gff for
BS04411.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nau-RA | 1..999 | 17..1003 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:16:40 Download gff for
BS04411.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nau-RA | 394..1408 | 10..1014 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:37 Download gff for
BS04411.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nau-RB | 402..1388 | 17..1003 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:32:28 Download gff for
BS04411.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nau-RA | 394..1408 | 10..1014 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:19:30 Download gff for
BS04411.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nau-RB | 402..1388 | 17..1003 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:19:30 Download gff for
BS04411.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23712946..23713139 | 810..1003 | 100 | <- | Minus |
3R | 23713208..23713274 | 743..809 | 100 | <- | Minus |
3R | 23716363..23716437 | 668..742 | 100 | <- | Minus |
3R | 23716501..23716623 | 545..667 | 100 | <- | Minus |
3R | 23717429..23717956 | 17..544 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:37 Download gff for
BS04411.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19538668..19538861 | 810..1003 | 100 | <- | Minus |
arm_3R | 19538930..19538996 | 743..809 | 100 | <- | Minus |
arm_3R | 19542085..19542159 | 668..742 | 100 | <- | Minus |
arm_3R | 19542223..19542345 | 545..667 | 100 | <- | Minus |
arm_3R | 19543151..19543678 | 17..544 | 100 | | Minus |
BS04411.pep Sequence
Translation from 16 to 1002
> BS04411.pep
MTKYNSGSSEMPAAQTIKQEYHNGYGQPTHPGYGFSAYSQQNPIAHPGQN
PHQTLQNFFSRFNAVGDASAGNGGAASISANGSGSSCNYSHANHNPVELD
KPLGMNMTPSPIYTTDYDDENSSLSSEEHVLAPLVCSSAQSSRPCLTWAC
KACKKKSVTVDRRKAATMRERRRLRKVNEAFEILKRRTSSNPNQRLPKVE
ILRNAIEYIESLEDLLQESSTTRDGDNLAPSLSGKSCQSDYLSSYAGAYL
EDKLSFYNKHMEKYDFDGNANGSSLDCLNLIVQSINKSTTSPIQNKATPS
ASDTQSPPSSGATAPTSLHVNFKRKCST*
BS04411.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:07:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nau-PB | 328 | CG10250-PB | 1..328 | 1..328 | 1722 | 100 | Plus |
nau-PA | 332 | CG10250-PA | 1..332 | 1..328 | 1707 | 98.8 | Plus |