Clone BS04412 Report

Search the DGRC for BS04412

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:44
Well:12
Vector:pDNR-Dual
Associated Gene/Transcriptpad-RB
Protein status:BS04412.pep: full length peptide match
Sequenced Size:2807

Clone Sequence Records

BS04412.3prime Sequence

910 bp (730 high quality bases) assembled on 2005-12-01

> BS04412.3prime
ATGGTCTAGAAAGCTTTTACTTTGCGACTGATGCGCTGGGATTCTGGAAC
TGAGAAAAGCCCAGCTGGACGTAATTGGCCAGAGATCCGGGCATATTGGA
GTCGGGAGCTTGTGTGATCGTTATTGTGTTTCCGGCCAGATCCTGGGTAG
TCACAACATGCATTACCTGGGCCGGTGGCTGCTGTGTTTGCGTCTGCTGA
GCAGAACGTTCTTGTTTGATTTCGAAAACCGCCTTATTGGGCACCTGACC
ATTGCTTCGAACGTGAGTTAGCGCAGGTGCTGCTGCAGGCGATGCAGTTG
CACCCGGAGCCGCGCTTTCCGGTCGAATTTTCTTATGCATCTCCCGATGC
TTCTCGTAGTGCAACTTGGTGGCAAAGTTTTTGTTGCAAACATCGCAACA
GTATAAGGTTTCGGTTGATGTCTGCGTGTGAATTCGCCTATGCTTATTCA
GGTTATCCTTTCGCGAGAAGGGCTTTTTGCACACCTCGCACGTGTACATC
TTTTGTCCAGAATGGGATACTAAGTGCCGGGACAGGTGCTCTTTGCGGCT
GAAGGTCTTGTCGCAACCCTCTTCCGAACACTTAAAGGGTCGCAGGCCCG
CGTGCAGCTTAACGTGTTGGGTGAGGTGTTCTTTCTTTTTAAATTCACGC
TTACAGGTGGGGCATATGAGGCCAGAAGTTGTGGGCGCTTCGCTCCCAGA
ATGGGTCGCGTTCTGTCCTTCCTGCTGTGGAGAAGGAAGGATCTGCTGCG
GCGGTCGCGCTGCTTTAACTTTCTGCCCTGAAGTGTCCTGGTTCTCAGGA
GGCTTGCGTACGATCTTTTTATGCTGCGCCGCCAGCGGAGGTGGTTGTGC
TTGGCTTANGGCGGGAACGGACACAGGAATCGGCTGTGAAGCANGAGTTG
GGGATGTAGT

BS04412.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:47:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG10309-PA 2778 CG10309-RA 1885..2778 910..17 4432 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:31:28
Subject Length Description Subject Range Query Range Score Percent Strand
pad-RB 3276 CG10309-RB 1958..2851 910..17 4448 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:31:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16344389..16344864 910..435 2358 99.6 Minus
3R 32079331 3R 16345186..16345404 235..17 1095 100 Minus
3R 32079331 3R 16344925..16345128 435..232 1020 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:31:25 has no hits.

BS04412.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:47:42 Download gff for BS04412.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10309-PA 1885..2778 17..910 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:08:57 Download gff for BS04412.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10309-PA 1885..2778 17..910 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:07:32 Download gff for BS04412.3prime
Subject Subject Range Query Range Percent Splice Strand
pad-RB 1958..2851 17..910 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:29:22 Download gff for BS04412.3prime
Subject Subject Range Query Range Percent Splice Strand
pad-RB 1958..2851 17..910 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:29:22 Download gff for BS04412.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 16344389..16344864 435..910 99 -> Minus
3R 16344926..16345127 233..434 100 -> Minus
3R 16345189..16345404 17..232 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:07:32 Download gff for BS04412.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12170111..12170586 435..910 99 -> Minus
arm_3R 12170648..12170849 233..434 100 -> Minus
arm_3R 12170911..12171126 17..232 100   Minus

BS04412.5prime Sequence

861 bp (742 high quality bases) assembled on 2005-12-01

> BS04412.5prime
GAAGTTATCAGTCGACATGGCTGCGGCCGGAAGCAACGTTCGCTGCATTA
ACTACTACGACCTGTGTCGCATCTGCACGGACAGCAGCGATCACAAGACG
AACATCTACTCACCCGAGGGACGCGCCAAGAATCTGAGCCAAAAGATACT
CGAGTGTCTCTCACTGCAGATCGATGAAAAGGATCGCTTGCCCAAAGTGG
TGTGCGCCCAGTGTGTGCAGTTGGTGGAGCAAATCCACGGACTTCGCGCC
ACTTGCCGTAACTCACAGACCATGCTAAACAACTGTCTCAATATTCGCCC
GGCGCCAAGCAGCGACAAGCTATACATTCGGGATGCGGTCGATGAAACTG
GGAAGAGCCTCAGTGTGGCGCAGTCAGCTCCACCAGTTCCTAATGGAGCT
CAGCAGTCCGGAAATCTCTTGAACAGCATAATCCAGGCGGTAAACATGCA
GCCCCAGCAGCAGTACACCATAACGATGGACAACGGGGTACAGCAGCAGC
AGCAGCAGCATCAAGCTATGCCGGAAGTTCAAATAAAAAGCGAAAGACAG
ACTGCTTTGGAAGAGTTTATACGCCTCAAGCCTGACATCAAGATAACGCC
GCTGGGGAAAAAGGAGCCCATATCGCCTGCCAAGCCCCAGCAGCAACATT
CTCTGCAGTCCCAGACAGTAACGCCTACCATAAACCCTACTCAGTTGCAG
TTACAACCGCAGCTAGGCGATCAACTGCAGCCTTTGTGGCAGCAGATTCA
ACAACTTCAGCTTCAGCAACAACTACAGCAACTGACCAACCAGCTGCAGG
CTACCACACAGTACTCCGTCGCTCAGGATGATACGTCAAGTTCTGGCGAC
AGTAAAAAGCC

BS04412.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:47:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG10309-PA 2778 CG10309-RA 157..848 170..861 3460 100 Plus
CG10309-PA 2778 CG10309-RA 1..153 17..169 765 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:24:45
Subject Length Description Subject Range Query Range Score Percent Strand
pad-RB 3276 CG10309-RB 77..921 17..861 4225 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:24:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16342601..16342988 165..552 1940 100 Plus
3R 32079331 3R 16343044..16343352 553..861 1545 100 Plus
3R 32079331 3R 16342394..16342550 17..173 770 99.4 Plus
Blast to na_te.dros performed 2015-02-12 05:24:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2353..2522 633..809 192 60.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6721..6897 637..808 162 57.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6758..6915 638..798 158 60.6 Plus

BS04412.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:47:43 Download gff for BS04412.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10309-PA 1..848 17..861 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:08:58 Download gff for BS04412.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10309-PA 1..848 17..861 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:32:07 Download gff for BS04412.5prime
Subject Subject Range Query Range Percent Splice Strand
pad-RB 77..921 17..861 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:21:45 Download gff for BS04412.5prime
Subject Subject Range Query Range Percent Splice Strand
pad-RB 77..921 17..861 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:21:45 Download gff for BS04412.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 16343044..16343352 553..861 100   Plus
3R 16342394..16342546 17..169 100 -> Plus
3R 16342606..16342988 170..552 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:32:07 Download gff for BS04412.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12168116..12168268 17..169 100 -> Plus
arm_3R 12168328..12168710 170..552 100 -> Plus
arm_3R 12168766..12169074 553..861 100   Plus

BS04412.complete Sequence

2807 bp assembled on 2012-04-25

GenBank Submission: KX799120

> BS04412.complete
GAAGTTATCAGTCGACATGGCTGCGGCCGGAAGCAACGTTCGCTGCATTA
ACTACTACGACCTGTGTCGCATCTGCACGGACAGCAGCGATCACAAGACG
AACATCTACTCACCCGAGGGACGCGCCAAGAATCTGAGCCAAAAGATACT
CGAGTGTCTCTCACTGCAGATCGATGAAAAGGATCGCTTGCCCAAAGTGG
TGTGCGCCCAGTGTGTGCAGTTGGTGGAGCAAATCCACGGACTTCGCGCC
ACTTGCCGTAACTCACAGACCATGCTAAACAACTGTCTCAATATTCGCCC
GGCGCCAAGCAGCGACAAGCTATACATTCGGGATGCGGTCGATGAAACTG
GGAAGAGCCTCAGTGTGGCGCAGTCAGCTCCACCAGTTCCTAATGGAGCT
CAGCAGTCCGGAAATCTCTTGAACAGCATAATCCAGGCGGTAAACATGCA
GCCCCAGCAGCAGTACACCATAACGATGGACAACGGGGTACAGCAGCAGC
AGCAGCAGCATCAAGCTATGCCGGAAGTTCAAATAAAAAGCGAAAGACAG
ACTGCTTTGGAAGAGTTTATACGCCTCAAGCCTGACATCAAGATAACGCC
GCTGGGGAAAAAGGAGCCCATATCGCCTGCCAAGCCCCAGCAGCAACATT
CTCTGCAGTCCCAGACAGTAACGCCTACCATAAACCCTACTCAGTTGCAG
TTACAACCGCAGCTAGGCGATCAACTGCAGCCTTTGTGGCAGCAGATTCA
ACAACTTCAGCTTCAGCAACAACTACAGCAACTGACCAACCAGCTGCAGG
CTACCACACAGTACTCCGTCGCTCAGGATGATACGTCAAGTTCTGGCGAC
AGTAAAAAGCCAAAGTTGAACTTTGTGCTCTCTTCGCCTACAGCGCCCCA
GTTCACCACTTCAATGCCGCAATTCGGTGGCAGTCAGCCGCAAATACAGC
TGCAGTTGATGCCAGGTAGCGGAGGAGTGACAAGTGCAGGGACAGTTCCT
GCCCAGACGCAGCTAAATGCTGCTGCCCTGCTCTCCAGCCTGGCGGGTCC
GCAGTCGACAACCAACCTGCTGTCACCAAACAAGTGCTTTCTGCCTATCA
CCATTCGGGACGAGAATTCGGATCAGCAGATCGTGGCGCACATAGACACC
AAGAACCTAGTGTTGCCCACGACATACCAAGTACAGATGAAACTTCAGCC
TCAGCTGGCCACTGCGGATGGCCAGCCAATCATGCAGCTGACACCAACAT
CAATTCCGGCTACTCTGCAACTGACACCGCAAACATTGGGCAATCCAGGA
AGCGCCTTCCAGGGCACTACGGTGACGCAAAATCAATTTCTGGCGCCGCA
ACAACCGCTTACCCAACTTCCAAATACGGCACAAGTGACCTCTCAGCAAA
TTATTAGATCTCCACATACCAGCACCACCAATTCGCAGTTGGTGATACGG
AATGTGACCAATATTCCACCGACTCCCACCACGCCCACTAGCAGCAAGAA
AGCCCCCACTTTTAAAACGCCTTCTCCAAAGCAAAAACCGATGCCATCGC
CAAAGAGCAAAACTACTGTGGGGCCGTCCTCAGGTGGAAGCAATGGCACG
TCCACCAACGAGTTCAAGCGATTGATAACCCAGACAAAGCCACAACCGCA
GGTGAAGCAACAGCAGACCGCAGGACTCTCTGCGTCAGGCGCCCCGACAG
CGACATCAGCAAATCAAGCAGCCATGCAGCGGCTCTCCTCGAATACAACG
ATCACCAAGGTGCCCAAGCAGCCTGCTTCTTTGCCGGCACCAGCTCCCAC
ATCTAATCCCGCCAAACTGCCCATGCTGAACAAACAGAATATCACAATCA
GTCGAATCTCAATGCAGACAGCGCCAAAGGCGCAAAGTAAGCCCTCTACT
ACATCCCCAACTCCTGCTTCACAGCCGATTCCTGTGTCCGTTCCCGCCCT
AAGCCAAGCACAACCACCTCCGCTGGCGGCGCAGCATAAAAAGATCGTAC
GCAAGCCTCCTGAGAACCAGGACACTTCAGGGCAGAAAGTTAAAGCAGCG
CGACCGCCGCAGCAGATCCTTCCTTCTCCACAGCAGGAAGGACAGAACGC
GACCCATTCTGGGAGCGAAGCGCCCACAACTTCTGGCCTCATATGCCCCA
CCTGTAAGCGTGAATTTAAAAAGAAAGAACACCTCACCCAACACGTTAAG
CTGCACGCGGGCCTGCGACCCTTTAAGTGTTCGGAAGAGGGTTGCGACAA
GACCTTCAGCCGCAAAGAGCACCTGTCCCGGCACTTAGTATCCCATTCTG
GACAAAAGATGTACACGTGCGAGGTGTGCAAAAAGCCCTTCTCGCGAAAG
GATAACCTGAATAAGCATAGGCGAATTCACACGCAGACATCAACCGAAAC
CTTATACTGTTGCGATGTTTGCAACAAAAACTTTGCCACCAAGTTGCACT
ACGAGAAGCATCGGGAGATGCATAAGAAAATTCGACCGGAAAGCGCGGCT
CCGGGTGCAACTGCATCGCCTGCAGCAGCACCTGCGCTAACTCACGTTCG
AAGCAATGGTCAGGTGCCCAATAAGGCGGTTTTCGAAATCAAACAAGAAC
GTTCTGCTCAGCAGACGCAAACACAGCAGCCACCGGCCCAGGTAATGCAT
GTTGTGACTACCCAGGATCTGGCCGGAAACACAATAACGATCACACAAGC
TCCCGACTCCAATATGCCCGGATCTCTGGCCAATTACGTCCAGCTGGGCT
TTTCTCAGTTCCAGAATCCCAGCGCATCAGTCGCAAAGTAAAAGCTTTCT
AGACCAT

BS04412.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:02:11
Subject Length Description Subject Range Query Range Score Percent Strand
pad-RB 2775 CG10309-PB 1..2775 17..2791 13875 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:02:14
Subject Length Description Subject Range Query Range Score Percent Strand
pad-RB 3276 CG10309-RB 77..2851 17..2791 13875 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:02:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16343044..16344864 553..2373 9105 100 Plus
3R 32079331 3R 16342601..16342988 165..552 1940 100 Plus
3R 32079331 3R 16345186..16345404 2573..2791 1095 100 Plus
3R 32079331 3R 16344925..16345128 2373..2576 1020 100 Plus
3R 32079331 3R 16342394..16342550 17..173 770 99.4 Plus
Blast to na_te.dros performed 2014-11-28 12:02:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2353..2522 633..809 192 60.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6721..6897 637..808 162 57.3 Plus

BS04412.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:28:36 Download gff for BS04412.complete
Subject Subject Range Query Range Percent Splice Strand
pad-RA 77..2854 17..2791 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 15:17:13 Download gff for BS04412.complete
Subject Subject Range Query Range Percent Splice Strand
pad-RB 77..2849 17..2789 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:41 Download gff for BS04412.complete
Subject Subject Range Query Range Percent Splice Strand
pad-RB 77..2849 17..2789 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:56:21 Download gff for BS04412.complete
Subject Subject Range Query Range Percent Splice Strand
pad-RA 77..2852 17..2789 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:55:53 Download gff for BS04412.complete
Subject Subject Range Query Range Percent Splice Strand
pad-RB 77..2849 17..2789 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:55:53 Download gff for BS04412.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16344926..16345127 2374..2575 100 -> Plus
3R 16345189..16345402 2576..2789 100   Plus
3R 16342394..16342546 17..169 100 -> Plus
3R 16342606..16342988 170..552 100 -> Plus
3R 16343044..16344864 553..2373 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:41 Download gff for BS04412.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12168116..12168268 17..169 100 -> Plus
arm_3R 12168328..12168710 170..552 100 -> Plus
arm_3R 12168766..12170586 553..2373 100 -> Plus
arm_3R 12170648..12170849 2374..2575 100 -> Plus
arm_3R 12170911..12171124 2576..2789 100   Plus

BS04412.pep Sequence

Translation from 16 to 2790

> BS04412.pep
MAAAGSNVRCINYYDLCRICTDSSDHKTNIYSPEGRAKNLSQKILECLSL
QIDEKDRLPKVVCAQCVQLVEQIHGLRATCRNSQTMLNNCLNIRPAPSSD
KLYIRDAVDETGKSLSVAQSAPPVPNGAQQSGNLLNSIIQAVNMQPQQQY
TITMDNGVQQQQQQHQAMPEVQIKSERQTALEEFIRLKPDIKITPLGKKE
PISPAKPQQQHSLQSQTVTPTINPTQLQLQPQLGDQLQPLWQQIQQLQLQ
QQLQQLTNQLQATTQYSVAQDDTSSSGDSKKPKLNFVLSSPTAPQFTTSM
PQFGGSQPQIQLQLMPGSGGVTSAGTVPAQTQLNAAALLSSLAGPQSTTN
LLSPNKCFLPITIRDENSDQQIVAHIDTKNLVLPTTYQVQMKLQPQLATA
DGQPIMQLTPTSIPATLQLTPQTLGNPGSAFQGTTVTQNQFLAPQQPLTQ
LPNTAQVTSQQIIRSPHTSTTNSQLVIRNVTNIPPTPTTPTSSKKAPTFK
TPSPKQKPMPSPKSKTTVGPSSGGSNGTSTNEFKRLITQTKPQPQVKQQQ
TAGLSASGAPTATSANQAAMQRLSSNTTITKVPKQPASLPAPAPTSNPAK
LPMLNKQNITISRISMQTAPKAQSKPSTTSPTPASQPIPVSVPALSQAQP
PPLAAQHKKIVRKPPENQDTSGQKVKAARPPQQILPSPQQEGQNATHSGS
EAPTTSGLICPTCKREFKKKEHLTQHVKLHAGLRPFKCSEEGCDKTFSRK
EHLSRHLVSHSGQKMYTCEVCKKPFSRKDNLNKHRRIHTQTSTETLYCCD
VCNKNFATKLHYEKHREMHKKIRPESAAPGATASPAAAPALTHVRSNGQV
PNKAVFEIKQERSAQQTQTQQPPAQVMHVVTTQDLAGNTITITQAPDSNM
PGSLANYVQLGFSQFQNPSASVAK*

BS04412.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:20:19
Subject Length Description Subject Range Query Range Score Percent Strand
pad-PB 924 CG10309-PB 1..924 1..924 4774 100 Plus
Spps-PA 968 CG5669-PA 224..822 114..788 287 23.9 Plus
Spps-PB 985 CG5669-PB 224..822 114..788 287 23.9 Plus
Spps-PA 968 CG5669-PA 57..826 115..823 281 22.6 Plus
Spps-PB 985 CG5669-PB 57..826 115..823 281 22.6 Plus
crol-PH 686 CG14938-PH 87..384 539..856 277 26.7 Plus
crol-PC 756 CG14938-PC 87..383 539..856 271 27 Plus
crol-PH 686 CG14938-PH 354..586 710..923 253 30.2 Plus