Clone BS04415 Report

Search the DGRC for BS04415

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:44
Well:15
Vector:pDNR-Dual
Associated Gene/Transcriptobsolete transcript model
Protein status:BS04415.pep: validated not full length
Sequenced Size:16

Clone Sequence Records

BS04415.5prime Sequence

570 bp (569 high quality bases) assembled on 2005-12-01

> BS04415.5prime
GAAGTTATCAGTCGACATGCTTATAATGGATATACAGACATCGACACATC
ATATCCATGGGCTCGGAACACATGAGCTCCAACATCGTATTTTACATCCA
CACATTCTACATTCAACTCAAGAAGAAACCCTTAATACAAGTACAGGCCA
GCTAGAGCACGATTCCCAACATCTGCAACAACATCACCTCACTCATCATC
AGCAACAGGACGTTTCACCGACTTTGCACAATTTACAAAACACCCGCACT
GGTGATAGCCTGAGCACTACTATTAATACAAATCAAAATCAACATGGTCA
TCAACATCTTTCCGGAAGTAACATGTATACCTCGTCTCAAATGGAAGATA
AGTCAAAAGCGAACAAGTATGATGAGTATTCAAGCCGGACACTGAGCAAC
ATTTCGGATGCCAATACGACGCCATCTGCAAACAATTTCATAACACAATC
CCAAGGAATAGAGTGGATAACAGCCATGAATGATATTCAAAACGGGGCAG
AAGACTCACACAGTTCGCAGGGCAGTATTTCGGGTGATGGTAAGATATTT
CTATAGAAGCTTTCTAGACC

BS04415.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:47:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG11049-PA 2535 sv-RA 1..525 17..541 2625 100 Plus
CG11049-PC 1944 sv-RC 1..525 17..541 2625 100 Plus
CG11049-PD 2043 sv-RD 1..525 17..541 2625 100 Plus
CG11049-PE 2385 sv-RE 1..525 17..541 2625 100 Plus
CG11049-PF 2379 sv-RF 1..525 17..541 2625 100 Plus
CG11049-PG 1887 sv-RG 1..525 17..541 2625 100 Plus
CG11049-PH 2529 sv-RH 1..525 17..541 2625 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:32:33
Subject Length Description Subject Range Query Range Score Percent Strand
sv-RH 4501 CG11049-RH 107..631 17..541 2625 100 Plus
sv-RG 2257 CG11049-RG 293..817 17..541 2625 100 Plus
sv-RF 2749 CG11049-RF 293..817 17..541 2625 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:32:28
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 1092286..1092628 17..359 1715 100 Plus
4 1348131 4 1095574..1095716 358..500 715 100 Plus
4 1348131 4 1095791..1095850 498..557 300 100 Plus
Blast to na_te.dros performed 2015-02-12 01:32:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1486..1582 117..210 126 61.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2319..2386 138..210 110 65.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6831..6891 150..210 107 63.9 Plus
Doc3-element 4740 Doc3-element DOC3 4740bp 534..639 167..268 106 59.8 Plus

BS04415.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:47:49 Download gff for BS04415.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11049-PH 1..525 17..541 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:09:06 Download gff for BS04415.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11049-PH 1..525 17..541 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:01:37 Download gff for BS04415.5prime
Subject Subject Range Query Range Percent Splice Strand
sv-RF 293..817 17..541 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:26:25 Download gff for BS04415.5prime
Subject Subject Range Query Range Percent Splice Strand
sv-RF 293..817 17..541 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:26:25 Download gff for BS04415.5prime
Subject Subject Range Query Range Percent Splice Strand
4 1092286..1092628 17..359 100 -> Plus
4 1095576..1095716 360..500 100 -> Plus
4 1095794..1095850 501..557 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:01:37 Download gff for BS04415.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_4 1112912..1113254 17..359 100 -> Plus
arm_4 1116202..1116342 360..500 100 -> Plus
arm_4 1116420..1116476 501..557 100   Plus

BS04415.3prime Sequence

570 bp (569 high quality bases) assembled on 2005-12-01

> BS04415.3prime
ATGGTCTAGAAAGCTTCTATAGAAATATCTTACCATCACCCGAAATACTG
CCCTGCGAACTGTGTGAGTCTTCTGCCCCGTTTTGAATATCATTCATGGC
TGTTATCCACTCTATTCCTTGGGATTGTGTTATGAAATTGTTTGCAGATG
GCGTCGTATTGGCATCCGAAATGTTGCTCAGTGTCCGGCTTGAATACTCA
TCATACTTGTTCGCTTTTGACTTATCTTCCATTTGAGACGAGGTATACAT
GTTACTTCCGGAAAGATGTTGATGACCATGTTGATTTTGATTTGTATTAA
TAGTAGTGCTCAGGCTATCACCAGTGCGGGTGTTTTGTAAATTGTGCAAA
GTCGGTGAAACGTCCTGTTGCTGATGATGAGTGAGGTGATGTTGTTGCAG
ATGTTGGGAATCGTGCTCTAGCTGGCCTGTACTTGTATTAAGGGTTTCTT
CTTGAGTTGAATGTAGAATGTGTGGATGTAAAATACGATGTTGGAGCTCA
TGTGTTCCGAGCCCATGGATATGATGTGTCGATGTCTGTATATCCATTAT
AAGCATGTCGACTGATAACT

BS04415.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:47:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG11049-PA 2535 sv-RA 1..525 556..32 2625 100 Minus
CG11049-PC 1944 sv-RC 1..525 556..32 2625 100 Minus
CG11049-PD 2043 sv-RD 1..525 556..32 2625 100 Minus
CG11049-PE 2385 sv-RE 1..525 556..32 2625 100 Minus
CG11049-PF 2379 sv-RF 1..525 556..32 2625 100 Minus
CG11049-PG 1887 sv-RG 1..525 556..32 2625 100 Minus
CG11049-PH 2529 sv-RH 1..525 556..32 2625 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:24:56
Subject Length Description Subject Range Query Range Score Percent Strand
sv-RH 4501 CG11049-RH 107..631 556..32 2625 100 Minus
sv-RG 2257 CG11049-RG 293..817 556..32 2625 100 Minus
sv-RF 2749 CG11049-RF 293..817 556..32 2625 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:24:47
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 1092286..1092628 556..214 1715 100 Minus
4 1348131 4 1095574..1095716 215..73 715 100 Minus
4 1348131 4 1095791..1095850 75..16 300 100 Minus
Blast to na_te.dros performed 2015-02-02 19:24:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1486..1582 456..363 126 61.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2319..2386 435..363 110 65.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6831..6891 423..363 107 63.9 Minus
Doc3-element 4740 Doc3-element DOC3 4740bp 534..639 406..305 106 59.8 Minus

BS04415.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:47:48 Download gff for BS04415.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11049-PH 1..525 32..556 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:09:05 Download gff for BS04415.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11049-PH 1..525 32..556 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:17:47 Download gff for BS04415.3prime
Subject Subject Range Query Range Percent Splice Strand
sv-RF 293..817 32..556 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:59:19 Download gff for BS04415.3prime
Subject Subject Range Query Range Percent Splice Strand
sv-RF 293..817 32..556 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:59:19 Download gff for BS04415.3prime
Subject Subject Range Query Range Percent Splice Strand
4 1092286..1092628 214..556 100 -> Minus
4 1095576..1095716 73..213 100 -> Minus
4 1095794..1095850 16..72 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:17:47 Download gff for BS04415.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_4 1112912..1113254 214..556 100 -> Minus
arm_4 1116202..1116342 73..213 100 -> Minus
arm_4 1116420..1116476 16..72 100   Minus

BS04415.complete Sequence

572 bp (572 high quality bases) assembled on 2005-09-13

> BS04415.complete
GAAGTTATCAGTCGACATGCTTATAATGGATATACAGACATCGACACATC
ATATCCATGGGCTCGGAACACATGAGCTCCAACATCGTATTTTACATCCA
CACATTCTACATTCAACTCAAGAAGAAACCCTTAATACAAGTACAGGCCA
GCTAGAGCACGATTCCCAACATCTGCAACAACATCACCTCACTCATCATC
AGCAACAGGACGTTTCACCGACTTTGCACAATTTACAAAACACCCGCACT
GGTGATAGCCTGAGCACTACTATTAATACAAATCAAAATCAACATGGTCA
TCAACATCTTTCCGGAAGTAACATGTATACCTCGTCTCAAATGGAAGATA
AGTCAAAAGCGAACAAGTATGATGAGTATTCAAGCCGGACACTGAGCAAC
ATTTCGGATGCCAATACGACGCCATCTGCAAACAATTTCATAACACAATC
CCAAGGAATAGAGTGGATAACAGCCATGAATGATATTCAAAACGGGGCAG
AAGACTCACACAGTTCGCAGGGCAGTATTTCGGGTGATGGTAAGATATTT
CTATAGAAGCTTTCTAGACCAT

BS04415.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:18:02
Subject Length Description Subject Range Query Range Score Percent Strand
sv-RH 2529 CG11049-PH 1..525 17..541 2625 100 Plus
sv-RG 1887 CG11049-PG 1..525 17..541 2625 100 Plus
sv-RF 2379 CG11049-PF 1..525 17..541 2625 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:18:04
Subject Length Description Subject Range Query Range Score Percent Strand
sv-RH 4501 CG11049-RH 107..631 17..541 2625 100 Plus
sv-RG 2257 CG11049-RG 293..817 17..541 2625 100 Plus
sv-RF 2749 CG11049-RF 293..817 17..541 2625 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:18:01
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 1092286..1092628 17..359 1715 100 Plus
4 1348131 4 1095574..1095716 358..500 715 100 Plus
4 1348131 4 1095791..1095850 498..557 300 100 Plus
Blast to na_te.dros performed 2014-11-28 01:18:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1486..1582 117..210 126 61.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2319..2386 138..210 110 65.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6831..6891 150..210 107 63.9 Plus
Doc3-element 4740 Doc3-element DOC3 4740bp 534..639 167..268 106 59.8 Plus

BS04415.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:50:12 Download gff for BS04415.complete
Subject Subject Range Query Range Percent Splice Strand
sv-RD 1..525 17..541 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:38:51 Download gff for BS04415.complete
Subject Subject Range Query Range Percent Splice Strand
sv-RC 273..797 17..541 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:45:31 Download gff for BS04415.complete
Subject Subject Range Query Range Percent Splice Strand
sv-RF 293..817 17..541 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:50:12 Download gff for BS04415.complete
Subject Subject Range Query Range Percent Splice Strand
sv-RC 273..797 17..541 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:50:17 Download gff for BS04415.complete
Subject Subject Range Query Range Percent Splice Strand
sv-RF 293..817 17..541 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:50:17 Download gff for BS04415.complete
Subject Subject Range Query Range Percent Splice Strand
4 1095794..1095849 501..556 100   Plus
4 1092286..1092628 17..359 100 -> Plus
4 1095576..1095716 360..500 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:45:31 Download gff for BS04415.complete
Subject Subject Range Query Range Percent Splice Strand
arm_4 1112912..1113254 17..359 100 -> Plus
arm_4 1116202..1116342 360..500 100 -> Plus
arm_4 1116420..1116475 501..556 100   Plus

BS04415.pep Sequence

Translation from 16 to 555

> BS04415.pep
MLIMDIQTSTHHIHGLGTHELQHRILHPHILHSTQEETLNTSTGQLEHDS
QHLQQHHLTHHQQQDVSPTLHNLQNTRTGDSLSTTINTNQNQHGHQHLSG
SNMYTSSQMEDKSKANKYDEYSSRTLSNISDANTTPSANNFITQSQGIEW
ITAMNDIQNGAEDSHSSQGSISGDGKIFL*

BS04415.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:46:07
Subject Length Description Subject Range Query Range Score Percent Strand
sv-PG 628 CG11049-PG 1..175 1..175 931 100 Plus
sv-PC 647 CG11049-PC 1..175 1..175 931 100 Plus
sv-PD 680 CG11049-PD 1..175 1..175 931 100 Plus
sv-PF 792 CG11049-PF 1..175 1..175 931 100 Plus
sv-PH 842 CG11049-PH 1..175 1..175 931 100 Plus