Clone Sequence Records
BS04415.5prime Sequence
570 bp (569 high quality bases) assembled on 2005-12-01
> BS04415.5prime
GAAGTTATCAGTCGACATGCTTATAATGGATATACAGACATCGACACATC
ATATCCATGGGCTCGGAACACATGAGCTCCAACATCGTATTTTACATCCA
CACATTCTACATTCAACTCAAGAAGAAACCCTTAATACAAGTACAGGCCA
GCTAGAGCACGATTCCCAACATCTGCAACAACATCACCTCACTCATCATC
AGCAACAGGACGTTTCACCGACTTTGCACAATTTACAAAACACCCGCACT
GGTGATAGCCTGAGCACTACTATTAATACAAATCAAAATCAACATGGTCA
TCAACATCTTTCCGGAAGTAACATGTATACCTCGTCTCAAATGGAAGATA
AGTCAAAAGCGAACAAGTATGATGAGTATTCAAGCCGGACACTGAGCAAC
ATTTCGGATGCCAATACGACGCCATCTGCAAACAATTTCATAACACAATC
CCAAGGAATAGAGTGGATAACAGCCATGAATGATATTCAAAACGGGGCAG
AAGACTCACACAGTTCGCAGGGCAGTATTTCGGGTGATGGTAAGATATTT
CTATAGAAGCTTTCTAGACC
BS04415.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:47:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11049-PA | 2535 | sv-RA | 1..525 | 17..541 | 2625 | 100 | Plus |
CG11049-PC | 1944 | sv-RC | 1..525 | 17..541 | 2625 | 100 | Plus |
CG11049-PD | 2043 | sv-RD | 1..525 | 17..541 | 2625 | 100 | Plus |
CG11049-PE | 2385 | sv-RE | 1..525 | 17..541 | 2625 | 100 | Plus |
CG11049-PF | 2379 | sv-RF | 1..525 | 17..541 | 2625 | 100 | Plus |
CG11049-PG | 1887 | sv-RG | 1..525 | 17..541 | 2625 | 100 | Plus |
CG11049-PH | 2529 | sv-RH | 1..525 | 17..541 | 2625 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:32:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sv-RH | 4501 | CG11049-RH | 107..631 | 17..541 | 2625 | 100 | Plus |
sv-RG | 2257 | CG11049-RG | 293..817 | 17..541 | 2625 | 100 | Plus |
sv-RF | 2749 | CG11049-RF | 293..817 | 17..541 | 2625 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:32:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4 | 1348131 | 4 | 1092286..1092628 | 17..359 | 1715 | 100 | Plus |
4 | 1348131 | 4 | 1095574..1095716 | 358..500 | 715 | 100 | Plus |
4 | 1348131 | 4 | 1095791..1095850 | 498..557 | 300 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 01:32:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1486..1582 | 117..210 | 126 | 61.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2319..2386 | 138..210 | 110 | 65.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6831..6891 | 150..210 | 107 | 63.9 | Plus |
Doc3-element | 4740 | Doc3-element DOC3 4740bp | 534..639 | 167..268 | 106 | 59.8 | Plus |
BS04415.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:47:49 Download gff for
BS04415.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11049-PH | 1..525 | 17..541 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:09:06 Download gff for
BS04415.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11049-PH | 1..525 | 17..541 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:01:37 Download gff for
BS04415.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sv-RF | 293..817 | 17..541 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:26:25 Download gff for
BS04415.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sv-RF | 293..817 | 17..541 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:26:25 Download gff for
BS04415.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4 | 1092286..1092628 | 17..359 | 100 | -> | Plus |
4 | 1095576..1095716 | 360..500 | 100 | -> | Plus |
4 | 1095794..1095850 | 501..557 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:01:37 Download gff for
BS04415.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_4 | 1112912..1113254 | 17..359 | 100 | -> | Plus |
arm_4 | 1116202..1116342 | 360..500 | 100 | -> | Plus |
arm_4 | 1116420..1116476 | 501..557 | 100 | | Plus |
BS04415.3prime Sequence
570 bp (569 high quality bases) assembled on 2005-12-01
> BS04415.3prime
ATGGTCTAGAAAGCTTCTATAGAAATATCTTACCATCACCCGAAATACTG
CCCTGCGAACTGTGTGAGTCTTCTGCCCCGTTTTGAATATCATTCATGGC
TGTTATCCACTCTATTCCTTGGGATTGTGTTATGAAATTGTTTGCAGATG
GCGTCGTATTGGCATCCGAAATGTTGCTCAGTGTCCGGCTTGAATACTCA
TCATACTTGTTCGCTTTTGACTTATCTTCCATTTGAGACGAGGTATACAT
GTTACTTCCGGAAAGATGTTGATGACCATGTTGATTTTGATTTGTATTAA
TAGTAGTGCTCAGGCTATCACCAGTGCGGGTGTTTTGTAAATTGTGCAAA
GTCGGTGAAACGTCCTGTTGCTGATGATGAGTGAGGTGATGTTGTTGCAG
ATGTTGGGAATCGTGCTCTAGCTGGCCTGTACTTGTATTAAGGGTTTCTT
CTTGAGTTGAATGTAGAATGTGTGGATGTAAAATACGATGTTGGAGCTCA
TGTGTTCCGAGCCCATGGATATGATGTGTCGATGTCTGTATATCCATTAT
AAGCATGTCGACTGATAACT
BS04415.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:47:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11049-PA | 2535 | sv-RA | 1..525 | 556..32 | 2625 | 100 | Minus |
CG11049-PC | 1944 | sv-RC | 1..525 | 556..32 | 2625 | 100 | Minus |
CG11049-PD | 2043 | sv-RD | 1..525 | 556..32 | 2625 | 100 | Minus |
CG11049-PE | 2385 | sv-RE | 1..525 | 556..32 | 2625 | 100 | Minus |
CG11049-PF | 2379 | sv-RF | 1..525 | 556..32 | 2625 | 100 | Minus |
CG11049-PG | 1887 | sv-RG | 1..525 | 556..32 | 2625 | 100 | Minus |
CG11049-PH | 2529 | sv-RH | 1..525 | 556..32 | 2625 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:24:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sv-RH | 4501 | CG11049-RH | 107..631 | 556..32 | 2625 | 100 | Minus |
sv-RG | 2257 | CG11049-RG | 293..817 | 556..32 | 2625 | 100 | Minus |
sv-RF | 2749 | CG11049-RF | 293..817 | 556..32 | 2625 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:24:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4 | 1348131 | 4 | 1092286..1092628 | 556..214 | 1715 | 100 | Minus |
4 | 1348131 | 4 | 1095574..1095716 | 215..73 | 715 | 100 | Minus |
4 | 1348131 | 4 | 1095791..1095850 | 75..16 | 300 | 100 | Minus |
Blast to na_te.dros performed 2015-02-02 19:24:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1486..1582 | 456..363 | 126 | 61.9 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2319..2386 | 435..363 | 110 | 65.8 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6831..6891 | 423..363 | 107 | 63.9 | Minus |
Doc3-element | 4740 | Doc3-element DOC3 4740bp | 534..639 | 406..305 | 106 | 59.8 | Minus |
BS04415.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:47:48 Download gff for
BS04415.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11049-PH | 1..525 | 32..556 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:09:05 Download gff for
BS04415.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11049-PH | 1..525 | 32..556 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:17:47 Download gff for
BS04415.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sv-RF | 293..817 | 32..556 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:59:19 Download gff for
BS04415.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sv-RF | 293..817 | 32..556 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:59:19 Download gff for
BS04415.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4 | 1092286..1092628 | 214..556 | 100 | -> | Minus |
4 | 1095576..1095716 | 73..213 | 100 | -> | Minus |
4 | 1095794..1095850 | 16..72 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:17:47 Download gff for
BS04415.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_4 | 1112912..1113254 | 214..556 | 100 | -> | Minus |
arm_4 | 1116202..1116342 | 73..213 | 100 | -> | Minus |
arm_4 | 1116420..1116476 | 16..72 | 100 | | Minus |
BS04415.complete Sequence
572 bp (572 high quality bases) assembled on 2005-09-13
> BS04415.complete
GAAGTTATCAGTCGACATGCTTATAATGGATATACAGACATCGACACATC
ATATCCATGGGCTCGGAACACATGAGCTCCAACATCGTATTTTACATCCA
CACATTCTACATTCAACTCAAGAAGAAACCCTTAATACAAGTACAGGCCA
GCTAGAGCACGATTCCCAACATCTGCAACAACATCACCTCACTCATCATC
AGCAACAGGACGTTTCACCGACTTTGCACAATTTACAAAACACCCGCACT
GGTGATAGCCTGAGCACTACTATTAATACAAATCAAAATCAACATGGTCA
TCAACATCTTTCCGGAAGTAACATGTATACCTCGTCTCAAATGGAAGATA
AGTCAAAAGCGAACAAGTATGATGAGTATTCAAGCCGGACACTGAGCAAC
ATTTCGGATGCCAATACGACGCCATCTGCAAACAATTTCATAACACAATC
CCAAGGAATAGAGTGGATAACAGCCATGAATGATATTCAAAACGGGGCAG
AAGACTCACACAGTTCGCAGGGCAGTATTTCGGGTGATGGTAAGATATTT
CTATAGAAGCTTTCTAGACCAT
BS04415.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:18:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sv-RH | 2529 | CG11049-PH | 1..525 | 17..541 | 2625 | 100 | Plus |
sv-RG | 1887 | CG11049-PG | 1..525 | 17..541 | 2625 | 100 | Plus |
sv-RF | 2379 | CG11049-PF | 1..525 | 17..541 | 2625 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:18:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sv-RH | 4501 | CG11049-RH | 107..631 | 17..541 | 2625 | 100 | Plus |
sv-RG | 2257 | CG11049-RG | 293..817 | 17..541 | 2625 | 100 | Plus |
sv-RF | 2749 | CG11049-RF | 293..817 | 17..541 | 2625 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:18:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4 | 1348131 | 4 | 1092286..1092628 | 17..359 | 1715 | 100 | Plus |
4 | 1348131 | 4 | 1095574..1095716 | 358..500 | 715 | 100 | Plus |
4 | 1348131 | 4 | 1095791..1095850 | 498..557 | 300 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 01:18:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1486..1582 | 117..210 | 126 | 61.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2319..2386 | 138..210 | 110 | 65.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6831..6891 | 150..210 | 107 | 63.9 | Plus |
Doc3-element | 4740 | Doc3-element DOC3 4740bp | 534..639 | 167..268 | 106 | 59.8 | Plus |
BS04415.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:50:12 Download gff for
BS04415.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sv-RD | 1..525 | 17..541 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:38:51 Download gff for
BS04415.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sv-RC | 273..797 | 17..541 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:45:31 Download gff for
BS04415.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sv-RF | 293..817 | 17..541 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:50:12 Download gff for
BS04415.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sv-RC | 273..797 | 17..541 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:50:17 Download gff for
BS04415.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sv-RF | 293..817 | 17..541 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:50:17 Download gff for
BS04415.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4 | 1095794..1095849 | 501..556 | 100 | | Plus |
4 | 1092286..1092628 | 17..359 | 100 | -> | Plus |
4 | 1095576..1095716 | 360..500 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:45:31 Download gff for
BS04415.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_4 | 1112912..1113254 | 17..359 | 100 | -> | Plus |
arm_4 | 1116202..1116342 | 360..500 | 100 | -> | Plus |
arm_4 | 1116420..1116475 | 501..556 | 100 | | Plus |
BS04415.pep Sequence
Translation from 16 to 555
> BS04415.pep
MLIMDIQTSTHHIHGLGTHELQHRILHPHILHSTQEETLNTSTGQLEHDS
QHLQQHHLTHHQQQDVSPTLHNLQNTRTGDSLSTTINTNQNQHGHQHLSG
SNMYTSSQMEDKSKANKYDEYSSRTLSNISDANTTPSANNFITQSQGIEW
ITAMNDIQNGAEDSHSSQGSISGDGKIFL*
BS04415.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:46:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sv-PG | 628 | CG11049-PG | 1..175 | 1..175 | 931 | 100 | Plus |
sv-PC | 647 | CG11049-PC | 1..175 | 1..175 | 931 | 100 | Plus |
sv-PD | 680 | CG11049-PD | 1..175 | 1..175 | 931 | 100 | Plus |
sv-PF | 792 | CG11049-PF | 1..175 | 1..175 | 931 | 100 | Plus |
sv-PH | 842 | CG11049-PH | 1..175 | 1..175 | 931 | 100 | Plus |