Clone Sequence Records
BS04416.3prime Sequence
827 bp (739 high quality bases) assembled on 2005-12-01
> BS04416.3prime
ATGGTCTAGAAAGCTTCTACATGGGACATCCGTGGACATAGCCGACATTA
CGGAAAATGGCCGCCGCTGCGGCGGAAGTGAGAAAATTGCAAGGATTGCT
GGCAGCCGCTGCAGCAGCGGCGGCGGCACTAAAAGAACTGCTCAGTCCGC
TGGGACAGCAGCCGAGTCCGCCCGCACCGCCGCCATCCTGGACCACAAAA
TCCTTCTCCATGGTCGCCTGATGACGCAGCTGCTCCAGACGCAGTTGATT
CTGTCGCTTCCATTTGGTCCGGCGATTCTGGTACCAGGTTTTCACCTGCG
TCTCGGACAGATTGAGCGTTTCGGCCACATCGCTGCGATCGGCCACGCTC
AGGTACTTCTGGCACCGGAACTTCCGCTCCAAGTAGGCGAGCTGGGCGTG
GGTGAAGGCGGTTCGGCGGCGTCGCGGCTTCCGGCCACTTTTGCTCAGCT
GCAGCTTGTGCTCCGCATAGCCGCCACTTGTACCGCCACCGGATCCCGGG
CCACTGCCACCGTTGGCATCCCGATCCCCATTGGCACCACTGGCCGCCGC
TGCCAGGAGTCCAGCAGCCACGCCCGCCGCCGCTGCAGCGGCGCTCAGTC
CGCTGGCTACTCCTCCTCCACCACCACCACCTCCGCCACCACCCGATCCT
GTGCCAGAGCCGGGGCCCCTTGTGGCCGATAGGCAGGACTCCACACTGGA
TTCGTCGTGGTGGGTGAATCTGCGGTGATGGTGCGACAGCAGTAGCTCCT
GCTGGCAGCCCGCAGCCGTCGAGTCCGGCGTAGATCGATCCTCAATGTCT
ATATCCGAATCGTCGTTGGAGAGCTCC
BS04416.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:47:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11085-PA | 828 | CG11085-RA | 18..828 | 827..17 | 4055 | 100 | Minus |
CG5488-PA | 1938 | B-H2-RA | 1267..1310 | 298..255 | 145 | 93.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 15:55:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11085-RA | 1544 | CG11085-RA | 439..1253 | 827..13 | 4060 | 99.9 | Minus |
B-H2-RB | 3142 | CG5488-RB | 1533..1644 | 361..250 | 200 | 78.6 | Minus |
B-H2-RA | 3102 | CG5488-RA | 1493..1604 | 361..250 | 200 | 78.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 15:54:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12619656..12620214 | 827..269 | 2795 | 100 | Minus |
X | 23542271 | X | 12620668..12620925 | 270..13 | 1275 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-01-30 15:55:00 has no hits.
BS04416.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:47:50 Download gff for
BS04416.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11085-PA | 18..828 | 17..827 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:09:07 Download gff for
BS04416.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11085-PA | 18..828 | 17..827 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:18:36 Download gff for
BS04416.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11085-RA | 439..1253 | 13..827 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:46:15 Download gff for
BS04416.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11085-RA | 439..1253 | 13..827 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:46:15 Download gff for
BS04416.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12619656..12620213 | 270..827 | 100 | -> | Minus |
X | 12620669..12620925 | 13..269 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:18:36 Download gff for
BS04416.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12513689..12514246 | 270..827 | 100 | -> | Minus |
arm_X | 12514702..12514958 | 13..269 | 99 | | Minus |
BS04416.5prime Sequence
720 bp (695 high quality bases) assembled on 2005-12-01
> BS04416.5prime
GAAGTTATCAGTCGACATGCAGAGCTCAAAATCTTTTTTAATACGCGATC
TTCTGGGCGATTTGATTAATCGACGACAAACAGATTCGGAACTGGAGCTC
TCCAACGACGATTCGGATATAGACATTGAGGATCGATCTACGCCGGACTC
GACGGCTGCGGGCTGCCAGCAGGAGCTACTGCTGTCGCACCATCACCGCA
GATTCACCCACCACGACGAATCCAGTGTGGAGTCCTGCCTATCGGCCACA
AGGGGCCCCGGCTCTGGCACAGGATCGGGTGGTGGCGGAGGTGGTGGTGG
TGGAGGAGGAGTAGCCAGCGGACTGAGCGCCGCTGCAGCGGCGGCGGGCG
TGGCTGCTGGACTCCTGGCAGCGGCGGCCAGTGGTGCCAATGGGGATCGG
GATGCCAACGGTGGCAGTGGCCCGGGATCCGGTGGCGGTACAAGTGGCGG
CTATGCGGAGCACAAGCTGCAGCTGAGCAAAAGTGGCCGGAAGCCGCGAC
GCCGCCGAACCGCCTTCACCCACGCCCAGCTCGCCTACTTGGAGCGGAAG
TTCCGGTGCCAGAAGTACCTGAGCGTGGCCGATCGCAGCGATGTGGCCGA
AACGCTCAATCTGTCCGAGACGCAGGTGAAAACCTGGTACCAGAATCGCC
GGACCAAATGGAAGCGACAGAATCAACTGCGTCTGGAGCAGCTGCGTCAT
CAGGCGACCATGGAGAAGGA
BS04416.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:47:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11085-PA | 828 | CG11085-RA | 13..644 | 89..720 | 3160 | 100 | Plus |
CG5488-PA | 1938 | B-H2-RA | 1267..1310 | 623..666 | 145 | 93.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:38:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11085-RA | 1544 | CG11085-RA | 362..1065 | 17..720 | 3520 | 100 | Plus |
B-H2-RB | 3142 | CG5488-RB | 1533..1644 | 560..671 | 200 | 78.6 | Plus |
B-H2-RA | 3102 | CG5488-RA | 1493..1604 | 560..671 | 200 | 78.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:38:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12619651..12620214 | 89..652 | 2820 | 100 | Plus |
X | 23542271 | X | 12616677..12616749 | 17..89 | 365 | 100 | Plus |
X | 23542271 | X | 12620668..12620737 | 651..720 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:38:07 has no hits.
BS04416.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:47:51 Download gff for
BS04416.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11085-PA | 13..643 | 89..719 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:09:08 Download gff for
BS04416.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11085-PA | 13..643 | 89..719 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:20:23 Download gff for
BS04416.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11085-RA | 355..1064 | 9..719 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:44:33 Download gff for
BS04416.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11085-RA | 355..1064 | 9..719 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:44:33 Download gff for
BS04416.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12616670..12616749 | 9..89 | 96 | -> | Plus |
X | 12619652..12620213 | 90..651 | 100 | -> | Plus |
X | 12620669..12620736 | 652..719 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:20:23 Download gff for
BS04416.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12510703..12510782 | 9..89 | 96 | -> | Plus |
arm_X | 12513685..12514246 | 90..651 | 100 | -> | Plus |
arm_X | 12514702..12514769 | 652..719 | 100 | | Plus |
BS04416.complete Sequence
920 bp (920 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ634933
> BS04416.complete
GAAGTTATCAGTCGACATGCAGAGCTCAAAATCTTTTTTAATACGCGATC
TTCTGGGCGATTTGATTAATCGACGACAAACAGATTCGGAACTGGAGCTC
TCCAACGACGATTCGGATATAGACATTGAGGATCGATCTACGCCGGACTC
GACGGCTGCGGGCTGCCAGCAGGAGCTACTGCTGTCGCACCATCACCGCA
GATTCACCCACCACGACGAATCCAGTGTGGAGTCCTGCCTATCGGCCACA
AGGGGCCCCGGCTCTGGCACAGGATCGGGTGGTGGCGGAGGTGGTGGTGG
TGGAGGAGGAGTAGCCAGCGGACTGAGCGCCGCTGCAGCGGCGGCGGGCG
TGGCTGCTGGACTCCTGGCAGCGGCGGCCAGTGGTGCCAATGGGGATCGG
GATGCCAACGGTGGCAGTGGCCCGGGATCCGGTGGCGGTACAAGTGGCGG
CTATGCGGAGCACAAGCTGCAGCTGAGCAAAAGTGGCCGGAAGCCGCGAC
GCCGCCGAACCGCCTTCACCCACGCCCAGCTCGCCTACTTGGAGCGGAAG
TTCCGGTGCCAGAAGTACCTGAGCGTGGCCGATCGCAGCGATGTGGCCGA
AACGCTCAATCTGTCCGAGACGCAGGTGAAAACCTGGTACCAGAATCGCC
GGACCAAATGGAAGCGACAGAATCAACTGCGTCTGGAGCAGCTGCGTCAT
CAGGCGACCATGGAGAAGGATTTTGTGGTCCAGGATGGCGGCGGTGCGGG
CGGACTCGGCTGCTGTCCCAGCGGACTGAGCAGTTCTTTTAGTGCCGCCG
CCGCTGCTGCAGCGGCTGCCAGCAATCCTTGCAATTTTCTCACTTCCGCC
GCAGCGGCGGCCATTTTCCGTAATGTCGGCTATGTCCACGGATGTCCCAT
GTAGAAGCTTTCTAGACCAT
BS04416.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:17:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11085-RA | 888 | CG11085-PA | 1..888 | 17..904 | 4440 | 100 | Plus |
B-H2-RB | 912 | CG5488-PB | 178..289 | 560..671 | 200 | 78.6 | Plus |
B-H2-RA | 1938 | CG5488-PA | 1204..1315 | 560..671 | 200 | 78.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:17:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11085-RA | 1544 | CG11085-RA | 362..1253 | 17..908 | 4445 | 99.9 | Plus |
B-H2-RB | 3142 | CG5488-RB | 1533..1644 | 560..671 | 200 | 78.6 | Plus |
B-H2-RA | 3102 | CG5488-RA | 1493..1604 | 560..671 | 200 | 78.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:17:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12619651..12620214 | 89..652 | 2820 | 100 | Plus |
X | 23542271 | X | 12620668..12620925 | 651..908 | 1275 | 99.6 | Plus |
X | 23542271 | X | 12616677..12616749 | 17..89 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:17:21 has no hits.
BS04416.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:32:29 Download gff for
BS04416.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11085-RA | 1..888 | 17..904 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:16:41 Download gff for
BS04416.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11085-RA | 355..1253 | 9..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:50:17 Download gff for
BS04416.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11085-RA | 362..1249 | 17..904 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:32:29 Download gff for
BS04416.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11085-RA | 355..1253 | 9..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:22:40 Download gff for
BS04416.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11085-RA | 362..1249 | 17..904 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:22:40 Download gff for
BS04416.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12616677..12616749 | 17..89 | 100 | -> | Plus |
X | 12619652..12620213 | 90..651 | 100 | -> | Plus |
X | 12620669..12620921 | 652..904 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:50:17 Download gff for
BS04416.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12514702..12514954 | 652..904 | 100 | | Plus |
arm_X | 12510710..12510782 | 17..89 | 100 | -> | Plus |
arm_X | 12513685..12514246 | 90..651 | 100 | -> | Plus |
BS04416.pep Sequence
Translation from 16 to 903
> BS04416.pep
MQSSKSFLIRDLLGDLINRRQTDSELELSNDDSDIDIEDRSTPDSTAAGC
QQELLLSHHHRRFTHHDESSVESCLSATRGPGSGTGSGGGGGGGGGGGVA
SGLSAAAAAAGVAAGLLAAAASGANGDRDANGGSGPGSGGGTSGGYAEHK
LQLSKSGRKPRRRRTAFTHAQLAYLERKFRCQKYLSVADRSDVAETLNLS
ETQVKTWYQNRRTKWKRQNQLRLEQLRHQATMEKDFVVQDGGGAGGLGCC
PSGLSSSFSAAAAAAAAASNPCNFLTSAAAAAIFRNVGYVHGCPM*
BS04416.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:15:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11085-PA | 295 | CG11085-PA | 1..295 | 1..295 | 1527 | 100 | Plus |
B-H2-PA | 645 | CG5488-PA | 293..501 | 65..283 | 266 | 37.1 | Plus |
B-H1-PA | 544 | CG5529-PA | 210..424 | 104..289 | 258 | 35.8 | Plus |
B-H2-PB | 303 | CG5488-PB | 4..159 | 124..283 | 245 | 42.4 | Plus |
slou-PA | 659 | CG6534-PA | 523..631 | 122..254 | 244 | 42.9 | Plus |