Clone BS04416 Report

Search the DGRC for BS04416

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:44
Well:16
Vector:pDNR-Dual
Associated Gene/TranscriptCG11085-RA
Protein status:BS04416.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04416.3prime Sequence

827 bp (739 high quality bases) assembled on 2005-12-01

> BS04416.3prime
ATGGTCTAGAAAGCTTCTACATGGGACATCCGTGGACATAGCCGACATTA
CGGAAAATGGCCGCCGCTGCGGCGGAAGTGAGAAAATTGCAAGGATTGCT
GGCAGCCGCTGCAGCAGCGGCGGCGGCACTAAAAGAACTGCTCAGTCCGC
TGGGACAGCAGCCGAGTCCGCCCGCACCGCCGCCATCCTGGACCACAAAA
TCCTTCTCCATGGTCGCCTGATGACGCAGCTGCTCCAGACGCAGTTGATT
CTGTCGCTTCCATTTGGTCCGGCGATTCTGGTACCAGGTTTTCACCTGCG
TCTCGGACAGATTGAGCGTTTCGGCCACATCGCTGCGATCGGCCACGCTC
AGGTACTTCTGGCACCGGAACTTCCGCTCCAAGTAGGCGAGCTGGGCGTG
GGTGAAGGCGGTTCGGCGGCGTCGCGGCTTCCGGCCACTTTTGCTCAGCT
GCAGCTTGTGCTCCGCATAGCCGCCACTTGTACCGCCACCGGATCCCGGG
CCACTGCCACCGTTGGCATCCCGATCCCCATTGGCACCACTGGCCGCCGC
TGCCAGGAGTCCAGCAGCCACGCCCGCCGCCGCTGCAGCGGCGCTCAGTC
CGCTGGCTACTCCTCCTCCACCACCACCACCTCCGCCACCACCCGATCCT
GTGCCAGAGCCGGGGCCCCTTGTGGCCGATAGGCAGGACTCCACACTGGA
TTCGTCGTGGTGGGTGAATCTGCGGTGATGGTGCGACAGCAGTAGCTCCT
GCTGGCAGCCCGCAGCCGTCGAGTCCGGCGTAGATCGATCCTCAATGTCT
ATATCCGAATCGTCGTTGGAGAGCTCC

BS04416.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:47:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG11085-PA 828 CG11085-RA 18..828 827..17 4055 100 Minus
CG5488-PA 1938 B-H2-RA 1267..1310 298..255 145 93.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 15:55:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG11085-RA 1544 CG11085-RA 439..1253 827..13 4060 99.9 Minus
B-H2-RB 3142 CG5488-RB 1533..1644 361..250 200 78.6 Minus
B-H2-RA 3102 CG5488-RA 1493..1604 361..250 200 78.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 15:54:56
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12619656..12620214 827..269 2795 100 Minus
X 23542271 X 12620668..12620925 270..13 1275 99.6 Minus
Blast to na_te.dros performed on 2015-01-30 15:55:00 has no hits.

BS04416.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:47:50 Download gff for BS04416.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11085-PA 18..828 17..827 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:09:07 Download gff for BS04416.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11085-PA 18..828 17..827 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:18:36 Download gff for BS04416.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11085-RA 439..1253 13..827 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:46:15 Download gff for BS04416.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11085-RA 439..1253 13..827 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:46:15 Download gff for BS04416.3prime
Subject Subject Range Query Range Percent Splice Strand
X 12619656..12620213 270..827 100 -> Minus
X 12620669..12620925 13..269 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:18:36 Download gff for BS04416.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 12513689..12514246 270..827 100 -> Minus
arm_X 12514702..12514958 13..269 99   Minus

BS04416.5prime Sequence

720 bp (695 high quality bases) assembled on 2005-12-01

> BS04416.5prime
GAAGTTATCAGTCGACATGCAGAGCTCAAAATCTTTTTTAATACGCGATC
TTCTGGGCGATTTGATTAATCGACGACAAACAGATTCGGAACTGGAGCTC
TCCAACGACGATTCGGATATAGACATTGAGGATCGATCTACGCCGGACTC
GACGGCTGCGGGCTGCCAGCAGGAGCTACTGCTGTCGCACCATCACCGCA
GATTCACCCACCACGACGAATCCAGTGTGGAGTCCTGCCTATCGGCCACA
AGGGGCCCCGGCTCTGGCACAGGATCGGGTGGTGGCGGAGGTGGTGGTGG
TGGAGGAGGAGTAGCCAGCGGACTGAGCGCCGCTGCAGCGGCGGCGGGCG
TGGCTGCTGGACTCCTGGCAGCGGCGGCCAGTGGTGCCAATGGGGATCGG
GATGCCAACGGTGGCAGTGGCCCGGGATCCGGTGGCGGTACAAGTGGCGG
CTATGCGGAGCACAAGCTGCAGCTGAGCAAAAGTGGCCGGAAGCCGCGAC
GCCGCCGAACCGCCTTCACCCACGCCCAGCTCGCCTACTTGGAGCGGAAG
TTCCGGTGCCAGAAGTACCTGAGCGTGGCCGATCGCAGCGATGTGGCCGA
AACGCTCAATCTGTCCGAGACGCAGGTGAAAACCTGGTACCAGAATCGCC
GGACCAAATGGAAGCGACAGAATCAACTGCGTCTGGAGCAGCTGCGTCAT
CAGGCGACCATGGAGAAGGA

BS04416.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:47:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG11085-PA 828 CG11085-RA 13..644 89..720 3160 100 Plus
CG5488-PA 1938 B-H2-RA 1267..1310 623..666 145 93.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:38:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG11085-RA 1544 CG11085-RA 362..1065 17..720 3520 100 Plus
B-H2-RB 3142 CG5488-RB 1533..1644 560..671 200 78.6 Plus
B-H2-RA 3102 CG5488-RA 1493..1604 560..671 200 78.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:38:03
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12619651..12620214 89..652 2820 100 Plus
X 23542271 X 12616677..12616749 17..89 365 100 Plus
X 23542271 X 12620668..12620737 651..720 350 100 Plus
Blast to na_te.dros performed on 2015-02-12 05:38:07 has no hits.

BS04416.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:47:51 Download gff for BS04416.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11085-PA 13..643 89..719 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:09:08 Download gff for BS04416.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11085-PA 13..643 89..719 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:20:23 Download gff for BS04416.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11085-RA 355..1064 9..719 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:44:33 Download gff for BS04416.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11085-RA 355..1064 9..719 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:44:33 Download gff for BS04416.5prime
Subject Subject Range Query Range Percent Splice Strand
X 12616670..12616749 9..89 96 -> Plus
X 12619652..12620213 90..651 100 -> Plus
X 12620669..12620736 652..719 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:20:23 Download gff for BS04416.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 12510703..12510782 9..89 96 -> Plus
arm_X 12513685..12514246 90..651 100 -> Plus
arm_X 12514702..12514769 652..719 100   Plus

BS04416.complete Sequence

920 bp (920 high quality bases) assembled on 2005-09-13

GenBank Submission: FJ634933

> BS04416.complete
GAAGTTATCAGTCGACATGCAGAGCTCAAAATCTTTTTTAATACGCGATC
TTCTGGGCGATTTGATTAATCGACGACAAACAGATTCGGAACTGGAGCTC
TCCAACGACGATTCGGATATAGACATTGAGGATCGATCTACGCCGGACTC
GACGGCTGCGGGCTGCCAGCAGGAGCTACTGCTGTCGCACCATCACCGCA
GATTCACCCACCACGACGAATCCAGTGTGGAGTCCTGCCTATCGGCCACA
AGGGGCCCCGGCTCTGGCACAGGATCGGGTGGTGGCGGAGGTGGTGGTGG
TGGAGGAGGAGTAGCCAGCGGACTGAGCGCCGCTGCAGCGGCGGCGGGCG
TGGCTGCTGGACTCCTGGCAGCGGCGGCCAGTGGTGCCAATGGGGATCGG
GATGCCAACGGTGGCAGTGGCCCGGGATCCGGTGGCGGTACAAGTGGCGG
CTATGCGGAGCACAAGCTGCAGCTGAGCAAAAGTGGCCGGAAGCCGCGAC
GCCGCCGAACCGCCTTCACCCACGCCCAGCTCGCCTACTTGGAGCGGAAG
TTCCGGTGCCAGAAGTACCTGAGCGTGGCCGATCGCAGCGATGTGGCCGA
AACGCTCAATCTGTCCGAGACGCAGGTGAAAACCTGGTACCAGAATCGCC
GGACCAAATGGAAGCGACAGAATCAACTGCGTCTGGAGCAGCTGCGTCAT
CAGGCGACCATGGAGAAGGATTTTGTGGTCCAGGATGGCGGCGGTGCGGG
CGGACTCGGCTGCTGTCCCAGCGGACTGAGCAGTTCTTTTAGTGCCGCCG
CCGCTGCTGCAGCGGCTGCCAGCAATCCTTGCAATTTTCTCACTTCCGCC
GCAGCGGCGGCCATTTTCCGTAATGTCGGCTATGTCCACGGATGTCCCAT
GTAGAAGCTTTCTAGACCAT

BS04416.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:17:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG11085-RA 888 CG11085-PA 1..888 17..904 4440 100 Plus
B-H2-RB 912 CG5488-PB 178..289 560..671 200 78.6 Plus
B-H2-RA 1938 CG5488-PA 1204..1315 560..671 200 78.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:17:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG11085-RA 1544 CG11085-RA 362..1253 17..908 4445 99.9 Plus
B-H2-RB 3142 CG5488-RB 1533..1644 560..671 200 78.6 Plus
B-H2-RA 3102 CG5488-RA 1493..1604 560..671 200 78.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:17:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12619651..12620214 89..652 2820 100 Plus
X 23542271 X 12620668..12620925 651..908 1275 99.6 Plus
X 23542271 X 12616677..12616749 17..89 365 100 Plus
Blast to na_te.dros performed on 2014-11-27 01:17:21 has no hits.

BS04416.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:32:29 Download gff for BS04416.complete
Subject Subject Range Query Range Percent Splice Strand
CG11085-RA 1..888 17..904 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:16:41 Download gff for BS04416.complete
Subject Subject Range Query Range Percent Splice Strand
CG11085-RA 355..1253 9..908 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:50:17 Download gff for BS04416.complete
Subject Subject Range Query Range Percent Splice Strand
CG11085-RA 362..1249 17..904 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:32:29 Download gff for BS04416.complete
Subject Subject Range Query Range Percent Splice Strand
CG11085-RA 355..1253 9..908 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:22:40 Download gff for BS04416.complete
Subject Subject Range Query Range Percent Splice Strand
CG11085-RA 362..1249 17..904 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:22:40 Download gff for BS04416.complete
Subject Subject Range Query Range Percent Splice Strand
X 12616677..12616749 17..89 100 -> Plus
X 12619652..12620213 90..651 100 -> Plus
X 12620669..12620921 652..904 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:50:17 Download gff for BS04416.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 12514702..12514954 652..904 100   Plus
arm_X 12510710..12510782 17..89 100 -> Plus
arm_X 12513685..12514246 90..651 100 -> Plus

BS04416.pep Sequence

Translation from 16 to 903

> BS04416.pep
MQSSKSFLIRDLLGDLINRRQTDSELELSNDDSDIDIEDRSTPDSTAAGC
QQELLLSHHHRRFTHHDESSVESCLSATRGPGSGTGSGGGGGGGGGGGVA
SGLSAAAAAAGVAAGLLAAAASGANGDRDANGGSGPGSGGGTSGGYAEHK
LQLSKSGRKPRRRRTAFTHAQLAYLERKFRCQKYLSVADRSDVAETLNLS
ETQVKTWYQNRRTKWKRQNQLRLEQLRHQATMEKDFVVQDGGGAGGLGCC
PSGLSSSFSAAAAAAAAASNPCNFLTSAAAAAIFRNVGYVHGCPM*

BS04416.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:15:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG11085-PA 295 CG11085-PA 1..295 1..295 1527 100 Plus
B-H2-PA 645 CG5488-PA 293..501 65..283 266 37.1 Plus
B-H1-PA 544 CG5529-PA 210..424 104..289 258 35.8 Plus
B-H2-PB 303 CG5488-PB 4..159 124..283 245 42.4 Plus
slou-PA 659 CG6534-PA 523..631 122..254 244 42.9 Plus