Clone Sequence Records
BS04417.3prime Sequence
904 bp (824 high quality bases) assembled on 2005-12-01
> BS04417.3prime
ATGGTCTAGAAAGCTTTTACTTTTGCGAGAGAATTTCTATTTTTGGAGGC
GGCGTAATAGAGGAAGTGCGCGAAGTATTTGATGCATCTATACTTGCTCG
TCGTGCAGCTGCGGCAATATACGACCCGTAGTACCTACTAAGCATGTGTT
GATCAACCTGGTTCAGTTCAAGATACGCATCTGAAATGGGAACTGACAGG
GTTGATGTTTTCGCAGTAGCCATTGACGATATGAGTGCAGTTTGGGGCGC
GACAATGCACTCTTGTATAGGACATTCCTCAAGTGAGCTTGACTCCTCGT
GTTGGCTACTACTGCTACCCAAGGACCTGGCTGCGGAGCTGGCAATTGAA
AAGTTGTGCTGTTCAAGGTCTTCTGGATCGTGGTCGGGGTCATGATCGGG
ATCGGCATCAAATGAAGATAGCCTGCCATCGATTAGGTACGAGTTATTGT
CCTCAATGGAAAATATTTGCTTCAAAGTGCCCCTTGTTTTTTTCCTGTCT
TCCCCATCCGTATAAGAATCAGTATCAGGAATAATGCTATCGTCTACCAC
GTCGACATTAACTTCTACATCAATATCAGCGTCTATGTCTGCATCTTGCA
CAGGTTTTTCTAATCCCAACACAACTTCGCGGTGTATTGTTTGCTTGGTA
ATGACAGTATGATGAGTTTGAGTTGTTGTCCTCGCCGAAGTGGTTGGCGT
AACTGACGACTCCTGGTCTTCAGAGACAATATCAACGATTTGGACATCGG
GTGCCAGTAGCGAAGCCACGTCAAACTGGCGCTTCCGCGTCTGCGAAAAC
ATATTCGCGATTGTTGTTGTCGTGGTGGAGTTGATATAGGCAAAGTGCTG
ATGATGGGAATGTGGCTGCTGGAGCTGAGTTGGGTGGATTGTCTGATCTA
GGTT
BS04417.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:47:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11152-PA | 1800 | CG11152-RA | 913..1800 | 904..17 | 4415 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:39:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fd102C-RA | 2324 | CG11152-RA | 1214..2104 | 904..14 | 4440 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:39:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 837206..838096 | 14..904 | 4440 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:39:41 has no hits.
BS04417.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:47:52 Download gff for
BS04417.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11152-PA | 913..1800 | 17..904 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:09:10 Download gff for
BS04417.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11152-PA | 913..1800 | 17..904 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:07:39 Download gff for
BS04417.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fd102C-RA | 1214..2104 | 14..904 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:21:35 Download gff for
BS04417.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fd102C-RA | 1214..2104 | 14..904 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:21:35 Download gff for
BS04417.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 837206..838096 | 14..904 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:07:39 Download gff for
BS04417.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 857832..858722 | 14..904 | 99 | | Plus |
BS04417.5prime Sequence
837 bp (821 high quality bases) assembled on 2005-12-01
> BS04417.5prime
GAAGTTATCAGTCGACATGGCGCACTCTGACATATGTGCTTTACAGACGA
CCACTGCTGACCAGGATCAGGGAACGTCTTCAAGGGACAGCAATGTTCCC
AAGCCGTCTTTGCCCAACATCTACCCACTTGGAACGACAAGAACTTCACA
AGCTCAATCAACGACGATGACTTTGGAACAATACCGCCTCCAGCTGTATA
ACTATGCACTCAATATTGAACGACTACGCTGCCCCCAATATGGTGGGACG
GGTGGCAGTGGAGCTAGTGCTCCTTGGTTGCATTTAAGCCCCTACGGACA
CCATGGCTCAGGCAGTCTTCCATCAGTTAATCGAATGGCCGCTCTTTCAA
CAATTTCCCTCTTCCCACAAACGCAACGCATTTTTCAACCTGAGGAGCCT
AAACCGCAACACAGCTATATTGGTTTGATTGCCATGGCCATATTGAGCTC
AACTGATATGAAGTTGGTTCTCTCAGACATTTATCAATATATTTTGGATA
ATTATCCTTACTTTAGAAGTCGGGGGCCGGGATGGAGAAACTCCATCAGG
CACAATCTCTCTCTAAATGATTGCTTTATCAAATCTGGACGAAGTGCAAA
TGGCAAAGGGCACTACTGGGCAATACATCCAGCCAACATGGAGGATTTTC
GCAAAGGGGATTTTAGACGTCGCAAGGCGCAGCGTAAGGTCCGAAAGCAT
ATGGGTCTATCGGTGGATGACGCCAGCACTGACTCGCCCAGCCCGCCGCC
TTTGGATCTTACAACTCCACCCCCACCGAGTTCCCAGTCTGCTCTGCAAC
TATCTGCCCTGGGTTATCCATACCACCAGCACTATAT
BS04417.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:47:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11152-PA | 1800 | CG11152-RA | 1..821 | 17..837 | 4105 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:30:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fd102C-RA | 2324 | CG11152-RA | 302..1122 | 17..837 | 4105 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:30:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 838188..839008 | 837..17 | 4105 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:30:01 has no hits.
BS04417.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:47:53 Download gff for
BS04417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11152-PA | 1..821 | 17..837 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:09:11 Download gff for
BS04417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11152-PA | 1..821 | 17..837 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:48:41 Download gff for
BS04417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fd102C-RA | 290..1122 | 4..837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:48:39 Download gff for
BS04417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fd102C-RA | 290..1122 | 4..837 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:48:39 Download gff for
BS04417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 838188..839020 | 4..837 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:48:41 Download gff for
BS04417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 858814..859646 | 4..837 | 99 | | Minus |
BS04417.complete Sequence
1832 bp assembled on 2008-01-02
GenBank Submission: KX799749
> BS04417.complete
GAAGTTATCAGTCGACATGGCGCACTCTGACATATGTGCTTTACAGACGA
CCACTGCTGACCAGGATCAGGGAACGTCTTCAAGGGACAGCAATGTTCCC
AAGCCGTCTTTGCCCAACATCTACCCACTTGGAACGACAAGAACTTCACA
AGCTCAATCAACGACGATGACTTTGGAACAATACCGCCTCCAGCTGTATA
ACTATGCACTCAATATTGAACGACTACGCTGCCCCCAATATGGTGGGACG
GGTGGCAGTGGAGCTAGTGCTCCTTGGTTGCATTTAAGCCCCTACGGACA
CCATGGCTCAGGCAGTCTTCCATCAGTTAATCGAATGGCCGCTCTTTCAA
CAATTTCCCTCTTCCCACAAACGCAACGCATTTTTCAACCTGAGGAGCCT
AAACCGCAACACAGCTATATTGGTTTGATTGCCATGGCCATATTGAGCTC
AACTGATATGAAGTTGGTTCTCTCAGACATTTATCAATATATTTTGGATA
ATTATCCTTACTTTAGAAGTCGGGGGCCGGGATGGAGAAACTCCATCAGG
CACAATCTCTCTCTAAATGATTGCTTTATCAAATCTGGACGAAGTGCAAA
TGGCAAAGGGCACTACTGGGCAATACATCCAGCCAACATGGAGGATTTTC
GCAAAGGGGATTTTAGACGTCGCAAGGCGCAGCGTAAGGTCCGAAAGCAT
ATGGGTCTATCGGTGGATGACGCCAGCACTGACTCGCCCAGCCCGCCGCC
TTTGGATCTTACAACTCCACCCCCACCGAGTTCCCAGTCTGCTCTGCAAC
TATCTGCCCTGGGTTATCCATACCACCAGCACTATATCGGCCAATTCTTT
AACAGGAGCTCAGCACCTGGTATGACGCATTATTCCCCACCAGATCCAGC
CTTGTTAATGCAACGACAAGAGGCGAATAACCTAGATCAGACAATCCAAC
CAACTCAGCTCCAGCAGCCACATTCCCATCATCAGCACTTTGCCTATATC
AACTCCACCACGACAACAACAATCGCGAATATGTTTTCGCAGACGCGGAA
GCGCCAGTTTGACGTGGCTTCGCTACTGGCACCCGATGTCCAAATCGTTG
ATATTGTCTCTGAAGACCAGGAGTCGTCAGTTACGCCAACCACTTCGGCG
AGGACAACAACTCAAACTCATCATACTGTCATTACCAAGCAAACAATACA
CCGCGAAGTTGTGTTGGGATTAGAAAAACCTGTGCAAGATGCAGACATAG
ACGCTGATATTGATGTAGAAGTTAATGTCGACGTGGTAGACGATAGCATT
ATTCCTGATACTGATTCTTATACGGATGGGGAAGACAGGAAAAAAACAAG
GGGCACTTTGAAGCAAATATTTTCCATTGAGGACAATAACTCGTACCTAA
TCGATGGCAGGCTATCTTCATTTGATGCCGATCCCGATCATGACCCCGAC
CACGATCCAGAAGACCTTGAACAGCACAACTTTTCAATTGCCAGCTCCGC
AGCCAGGTCCTTGGGTAGCAGTAGTAGCCAACACGAGGAGTCAAGCTCAC
TTGAGGAATGTCCTATACAAGAGTGCATTGTCGCGCCCCAAACTGCACTC
ATATCGTCAATGGCTACTGCGAAAACATCAACCCTGTCAGTTCCCATTTC
AGATGCGTATCTTGAACTGAACCAGGTTGATCAACACATGCTTAGTAGGT
ACTACGGGTCGTATATTGCCGCAGCTGCACGACGAGCAAGTATAGATGCA
TCAAATACTTCGCGCACTTCCTCTATTACGCCGCCTCCAAAAATAGAAAT
TCTCTCGCAAAAGTAAAAGCTTTCTAGACCAT
BS04417.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:09:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fd102C-RA | 1800 | CG11152-PA | 1..1800 | 17..1816 | 9000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:09:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fd102C-RA | 2324 | CG11152-RA | 302..2104 | 17..1819 | 9015 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:09:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 837206..839008 | 1819..17 | 9015 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:09:55 has no hits.
BS04417.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:05:03 Download gff for
BS04417.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11152-RA | 1..1800 | 17..1816 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:36:20 Download gff for
BS04417.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11152-RA | 279..2070 | 17..1808 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:16:06 Download gff for
BS04417.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fd102C-RA | 302..2093 | 17..1808 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:05:03 Download gff for
BS04417.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11152-RA | 1..1800 | 17..1816 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:14:39 Download gff for
BS04417.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fd102C-RA | 302..2093 | 17..1808 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:14:39 Download gff for
BS04417.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 837217..839008 | 17..1808 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:16:06 Download gff for
BS04417.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 857843..859634 | 17..1808 | 100 | | Minus |
BS04417.pep Sequence
Translation from 16 to 1815
> BS04417.pep
MAHSDICALQTTTADQDQGTSSRDSNVPKPSLPNIYPLGTTRTSQAQSTT
MTLEQYRLQLYNYALNIERLRCPQYGGTGGSGASAPWLHLSPYGHHGSGS
LPSVNRMAALSTISLFPQTQRIFQPEEPKPQHSYIGLIAMAILSSTDMKL
VLSDIYQYILDNYPYFRSRGPGWRNSIRHNLSLNDCFIKSGRSANGKGHY
WAIHPANMEDFRKGDFRRRKAQRKVRKHMGLSVDDASTDSPSPPPLDLTT
PPPPSSQSALQLSALGYPYHQHYIGQFFNRSSAPGMTHYSPPDPALLMQR
QEANNLDQTIQPTQLQQPHSHHQHFAYINSTTTTTIANMFSQTRKRQFDV
ASLLAPDVQIVDIVSEDQESSVTPTTSARTTTQTHHTVITKQTIHREVVL
GLEKPVQDADIDADIDVEVNVDVVDDSIIPDTDSYTDGEDRKKTRGTLKQ
IFSIEDNNSYLIDGRLSSFDADPDHDPDHDPEDLEQHNFSIASSAARSLG
SSSSQHEESSSLEECPIQECIVAPQTALISSMATAKTSTLSVPISDAYLE
LNQVDQHMLSRYYGSYIAAAARRASIDASNTSRTSSITPPPKIEILSQK*
BS04417.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:40:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fd102C-PA | 599 | CG11152-PA | 1..599 | 1..599 | 3122 | 100 | Plus |
| fd64A-PB | 365 | CG1132-PB | 91..198 | 129..230 | 273 | 48.2 | Plus |
| fd64A-PA | 365 | CG1132-PA | 91..198 | 129..230 | 273 | 48.2 | Plus |
| fd96Ca-PB | 372 | CG11921-PB | 11..114 | 127..228 | 272 | 51 | Plus |
| fd96Ca-PA | 372 | CG11921-PA | 11..114 | 127..228 | 272 | 51 | Plus |
