Clone Sequence Records
BS04419.3prime Sequence
799 bp (797 high quality bases) assembled on 2005-12-01
> BS04419.3prime
ATGGTCTAGAAAGCTTTCATTTATTCTTGGGCAAGTGGCGCTTCATGTGG
AGCGCCAGGTGATCACTCCTCGCAAAGCTCCTCTCGCACACGATGCATTT
GAAGGGTTTGGCCCCCGTGTGCTTCCGGTAGTGCCTCGTTAGCTCGTCCG
ACCTGGCGAATCTCCACTCGCATTCCGGCCACTGGCAGGTGTATGGCTTC
TCACCCGTGTGTATCCTTTGATGGGCCTTCAGATGAGAGCTTTTTGTGTA
CACCTTGGAGCAGCCGACGAAATCACAGTGGTGGATGCGTCGCTTTTCCA
GCTCGGGATTATTTCGGCGGTTGTAACGCACCGTTCGTACGCTCATCAAA
CTGGCGATGTGGGCCGCCGTTCCCGGTTGGTGGTGCGAGTGCCGACCACG
CCTCCCGCCCCCCGAAGAGCGGGGGGTGGGCGGTGGCTGTTGCTGTGGCA
CCTGTTGCTGCTGTGGTTGTTGCTGCTGCTGCTGAATGGCACTGGCGGGT
GTTAAGGTGGTTAGGGTGGTGGTGCAACTGTTGTTGCTGCCTGTGGCTGC
ACCACCCAGAAGTTGCAGCGTTGGCGGTGGGTTAATTAGGCCCATCACAT
GACCTTGCTGGTAGGGCGGTGGTGGGGTGGTGCGTCGTTGGGCGGCTGCA
GCAGCTGCTGCTGCCACCATCGAGCTGCCAGGGCTTCCGGGATCCGAACT
TGGCGGGGTCAAAGGTGGCACGAACATATGGCGACTGGCAGAGGAGGCGG
AGGAAGAGGAAATGGACGAGGAGGAGGTCGAGGGAGTGCTGGGCGCCGC
BS04419.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:47:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12029-PA | 330 | CG12029-RA | 1..330 | 346..17 | 1650 | 100 | Minus |
CG12653-PA | 1935 | btd-RA | 193..225 | 484..452 | 140 | 96.9 | Minus |
CG10325-PB | 1773 | abd-A-RB | 162..193 | 484..453 | 135 | 96.8 | Minus |
CG32466-PB | 2079 | rn-RB | 1582..1613 | 484..453 | 135 | 96.8 | Minus |
CG32778-PA | 2829 | CG32778-RA | 1534..1565 | 484..453 | 135 | 96.8 | Minus |
CG32466-PA | 2841 | rn-RA | 2344..2375 | 484..453 | 135 | 96.8 | Minus |
CG15532-PC | 3243 | hdc-RC | 2203..2234 | 484..453 | 135 | 96.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:38:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dar1-RB | 3526 | CG12029-RB | 2204..2986 | 799..17 | 3915 | 100 | Minus |
luna-RC | 8446 | CG33473-RC | 2861..3098 | 273..35 | 270 | 74.5 | Minus |
luna-RD | 3037 | CG33473-RD | 2290..2527 | 273..35 | 270 | 74.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:38:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3646886..3647421 | 799..264 | 2680 | 100 | Minus |
3L | 28110227 | 3L | 3652714..3652902 | 205..17 | 945 | 100 | Minus |
3L | 28110227 | 3L | 3649278..3649343 | 265..200 | 330 | 100 | Minus |
2R | 25286936 | 2R | 10983304..10983417 | 35..148 | 195 | 78.1 | Plus |
Blast to na_te.dros performed 2015-02-10 18:38:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G6 | 2042 | G6 G6_DM 2042bp | 1787..1849 | 553..491 | 108 | 63.5 | Minus |
BS04419.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:47:57 Download gff for
BS04419.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12029-PA | 1..330 | 17..346 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:09:15 Download gff for
BS04419.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12029-PA | 1..330 | 17..346 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:02:47 Download gff for
BS04419.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dar1-RB | 2204..2986 | 17..799 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:52:57 Download gff for
BS04419.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dar1-RB | 2204..2986 | 17..799 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:52:57 Download gff for
BS04419.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3646886..3647420 | 265..799 | 100 | -> | Minus |
3L | 3649279..3649338 | 205..264 | 100 | -> | Minus |
3L | 3652715..3652902 | 17..204 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:02:47 Download gff for
BS04419.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3646886..3647420 | 265..799 | 100 | -> | Minus |
arm_3L | 3649279..3649338 | 205..264 | 100 | -> | Minus |
arm_3L | 3652715..3652902 | 17..204 | 100 | | Minus |
BS04419.5prime Sequence
813 bp (746 high quality bases) assembled on 2005-12-01
> BS04419.5prime
GAAGTTATCAGTCGACATGCATACGGATATCATAATTGGTGATCAGTTTG
CCGCCAACAATAACTACTGGGTGATGCAGTCCCCGGAACTAGACTATCGG
CACGAGCTGATGGGTCGTCTGCATAAAATCGAGCCCGCCGATGTTGAGCT
TGAGGTTCTGGCAGCGGCCGCGGCAGCCGCAAACAACAACAACAACACCA
GCAGCAATAACAACCACAGCAGCAACAGCAGCAGCAACAACAGCAACGGC
AGCCAAACACCAAACGGCAACAACAACAGCAGTTTGGCAACCGGAGGCCA
TCAGCATCATCAGTTCCACCACCACCTGCACCACCACCACTCCCATCAGC
ACCACCACCAGCACCATCATTTGCACCAGCATCATTCGCACAGCCTTCAA
AGTGGCGAAAGTGGTGCATCGGAGGCGTGGCCCCACCTTCCCGCCCCCTC
GTACGCCAGCGATGTTCCACATGCGCAGCAGCAGCAACTTCAGCCCGCCG
GATCGCCGAATTCCAACTCAAACGGAGCCTACGGCTGTGCACCACTCTAC
GATGGAGCGCCCTACGAAGTGGCACTCGGCTACGGTGGTGCGGTGGTTGC
GTCAACGGGTGGTGCGACTTCCAGCGACAAGGAGTATTTATATGAAACCA
AAAACAAAGAGGCTCTCTACGCCGATCCGCTGGACGATCCCTACCAGCGA
CCCGTGCTCTGGGATGATATTACTACCTCAATCCAAAATATCGATCCGGA
GAACGCGCTCATGCTGAGCAGCAGCGGTAGCAGCAACAACAACGGCAGCA
GCAACAGCAGCAG
BS04419.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 16:47:39 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:01:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dar1-RB | 3526 | CG12029-RB | 731..1527 | 17..813 | 3985 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:01:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3644639..3645206 | 77..644 | 2840 | 100 | Plus |
3L | 28110227 | 3L | 3645874..3646043 | 644..813 | 850 | 100 | Plus |
3L | 28110227 | 3L | 3627082..3627144 | 17..79 | 315 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:01:13 has no hits.
BS04419.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:44:10 Download gff for
BS04419.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dar1-RB | 731..1527 | 17..813 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:01:58 Download gff for
BS04419.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dar1-RB | 731..1527 | 17..813 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:01:58 Download gff for
BS04419.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3627082..3627144 | 17..79 | 100 | -> | Plus |
3L | 3644642..3645206 | 80..644 | 100 | -> | Plus |
3L | 3645875..3646043 | 645..813 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:44:10 Download gff for
BS04419.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3627082..3627144 | 17..79 | 100 | -> | Plus |
arm_3L | 3644642..3645206 | 80..644 | 100 | -> | Plus |
arm_3L | 3645875..3646043 | 645..813 | 100 | | Plus |
BS04419.complete Sequence
2288 bp assembled on 2008-08-15
GenBank Submission: KX798855
> BS04419.complete
GAAGTTATCAGTCGACATGCATACGGATATCATAATTGGTGATCAGTTTG
CCGCCAACAATAACTACTGGGTGATGCAGTCCCCGGAACTAGACTATCGG
CACGAGCTGATGGGTCGTCTGCATAAAATCGAGCCCGCCGATGTTGAGCT
TGAGGTTCTGGCAGCGGCCGCGGCAGCCGCAAACAACAACAACAACACCA
GCAGCAATAACAACCACAGCAGCAACAGCAGCAGCAACAACAGCAACGGC
AGCCAAACACCAAACGGCAACAACAACAGCAGTTTGGCAACCGGAGGCCA
TCAGCATCATCAGTTCCACCACCACCTGCACCACCACCACTCCCATCAGC
ACCACCACCAGCACCATCATTTGCACCAGCATCATTCGCACAGCCTTCAA
AGTGGCGAAAGTGGTGCATCGGAGGCGTGGCCCCACCTTCCCGCCCCCTC
GTACGCCAGCGATGTTCCACATGCGCAGCAGCAGCAACTTCAGCCCGCCG
GATCGCCGAATTCCAACTCAAACGGAGCCTACGGCTGTGCACCACTCTAC
GATGGAGCGCCCTACGAAGTGGCACTCGGCTACGGTGGTGCGGTGGTTGC
GTCAACGGGTGGTGCGACTTCCAGCGACAAGGAGTATTTATATGAAACCA
AAAACAAAGAGGCTCTCTACGCCGATCCGCTGGACGATCCCTACCAGCGA
CCCGTGCTCTGGGATGATATTACTACCTCAATCCAAAATATCGATCCGGA
GAACGCGCTCATGCTGAGCAGCAGCGGTAGCAGCAACAACAACGGCAGCA
GCAACAGCAGCAGCAACACGGGCGAGTCTGCAACATCGCAGCTGCCGCAG
GTCAAGATGGAGGCGATCGATGAGAGCCTGCTCGAGACATTTTCGACCCC
ATTGCTCAGTCCCCTGGAGATAAAGACCGAGAAACAGCAGCGACAACAGC
AGCACCAGCACCAACAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAA
CACCAGCAACAACATCAGCAACAATACCAGCAGCAACACTATCAGCAACA
TTATCAGCAGCAGCACTTGTACCAGCATCATCCCAGCCTGGCGCTGCCTG
GCTTGCCACCCGCTGTCGACGTGGTAGAGTTGCAACTGCAGCAGCAGCAT
CAACAGCAGCAACATCTGCAGCACAACAACAGTAGCAGCAGCAGCCCCAA
GCTGGCGACCCCCGGCGACAACAGCGGCAACACCTCCTCCTATCAGCAAC
AGTACGCATCTCAATTGGTCTCCGGATCGGGAGGCGGCTATCTCAACGGT
AGCAGCAGCAACTCCTACGGCTACAGCTGGCACAGCAGTCAGTCCTTCCA
CACCAAATACCAAATACACCCGCCATCAGCCGCTGCTTCAGCCACCGCCT
CCGCCACTGCCACGCCCACAGCTCAACTCGGTGCTCAACAGCAGCAACAG
CAACAGCAGCAGCAACAGCTGCAGCAACTGTGCCCCCCTGCGGCGCCCAG
CACTCCCTCGACCTCCTCCTCGTCCATTTCCTCTTCCTCCGCCTCCTCTG
CCAGTCGCCATATGTTCGTGCCACCTTTGACCCCGCCAAGTTCGGATCCC
GGAAGCCCTGGCAGCTCGATGGTGGCAGCAGCAGCTGCTGCAGCCGCCCA
ACGACGCACCACCCCACCACCGCCCTACCAGCAAGGTCATGTGATGGGCC
TAATTAACCCACCGCCAACGCTGCAACTTCTGGGTGGTGCAGCCACAGGC
AGCAACAACAGTTGCACCACCACCCTAACCACCTTAACACCCGCCAGTGC
CATTCAGCAGCAGCAGCAACAACCACAGCAGCAACAGGTGCCACAGCAAC
AGCCACCGCCCACCCCCCGCTCTTCGGGGGGCGGGAGGCGTGGTCGGCAC
TCGCACCACCAACCGGGAACGGCGGCCCACATCGCCAGTTTGATGAGCGT
ACGAACGGTGCGTTACAACCGCCGAAATAATCCCGAGCTGGAAAAGCGAC
GCATCCACCACTGTGATTTCGTCGGCTGCTCCAAGGTGTACACAAAAAGC
TCTCATCTGAAGGCCCATCAAAGGATACACACGGGTGAGAAGCCATACAC
CTGCCAGTGGCCGGAATGCGAGTGGAGATTCGCCAGGTCGGACGAGCTAA
CGAGGCACTACCGGAAGCACACGGGGGCCAAACCCTTCAAATGCATCGTG
TGCGAGAGGAGCTTTGCGAGGAGTGATCACCTGGCGCTCCACATGAAGCG
CCACTTGCCCAAGAATAAATGAAAGCTTTCTAGACCAT
BS04419.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:56:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dar1-RB | 2256 | CG12029-PB | 1..2256 | 17..2272 | 11280 | 100 | Plus |
luna-RC | 1713 | CG33473-PC | 1475..1707 | 2022..2254 | 265 | 74.2 | Plus |
luna-RD | 1713 | CG33473-PD | 1475..1707 | 2022..2254 | 265 | 74.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:56:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dar1-RB | 3526 | CG12029-RB | 731..2986 | 17..2272 | 11280 | 100 | Plus |
luna-RC | 8446 | CG33473-RC | 2866..3098 | 2022..2254 | 265 | 74.2 | Plus |
luna-RD | 3037 | CG33473-RD | 2295..2527 | 2022..2254 | 265 | 74.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:55:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3645874..3646572 | 644..1342 | 3495 | 100 | Plus |
3L | 28110227 | 3L | 3646736..3647421 | 1340..2025 | 3430 | 100 | Plus |
3L | 28110227 | 3L | 3644639..3645206 | 77..644 | 2840 | 100 | Plus |
3L | 28110227 | 3L | 3652714..3652902 | 2084..2272 | 945 | 100 | Plus |
3L | 28110227 | 3L | 3649278..3649343 | 2024..2089 | 330 | 100 | Plus |
3L | 28110227 | 3L | 3627082..3627144 | 17..79 | 315 | 100 | Plus |
2R | 25286936 | 2R | 10983304..10983417 | 2254..2141 | 195 | 78.1 | Minus |
Blast to na_te.dros performed 2014-11-27 14:55:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6739..6923 | 1284..1472 | 206 | 60.4 | Plus |
BS04419.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:20:13 Download gff for
BS04419.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12029-RB | 209..2464 | 17..2272 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:34:55 Download gff for
BS04419.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dar1-RB | 731..2985 | 17..2271 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:52:50 Download gff for
BS04419.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12029-RB | 209..2463 | 17..2271 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:56:07 Download gff for
BS04419.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dar1-RB | 731..2985 | 17..2271 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:56:07 Download gff for
BS04419.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3627082..3627144 | 17..79 | 100 | -> | Plus |
3L | 3644642..3645206 | 80..644 | 100 | -> | Plus |
3L | 3645875..3646572 | 645..1342 | 100 | -> | Plus |
3L | 3646739..3647420 | 1343..2024 | 100 | -> | Plus |
3L | 3649279..3649338 | 2025..2084 | 100 | -> | Plus |
3L | 3652715..3652901 | 2085..2271 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:34:55 Download gff for
BS04419.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3627082..3627144 | 17..79 | 100 | -> | Plus |
arm_3L | 3644642..3645206 | 80..644 | 100 | -> | Plus |
arm_3L | 3645875..3646572 | 645..1342 | 100 | -> | Plus |
arm_3L | 3646739..3647420 | 1343..2024 | 100 | -> | Plus |
arm_3L | 3649279..3649338 | 2025..2084 | 100 | -> | Plus |
arm_3L | 3652715..3652901 | 2085..2271 | 100 | | Plus |
BS04419.pep Sequence
Translation from 16 to 2271
> BS04419.pep
MHTDIIIGDQFAANNNYWVMQSPELDYRHELMGRLHKIEPADVELEVLAA
AAAAANNNNNTSSNNNHSSNSSSNNSNGSQTPNGNNNSSLATGGHQHHQF
HHHLHHHHSHQHHHQHHHLHQHHSHSLQSGESGASEAWPHLPAPSYASDV
PHAQQQQLQPAGSPNSNSNGAYGCAPLYDGAPYEVALGYGGAVVASTGGA
TSSDKEYLYETKNKEALYADPLDDPYQRPVLWDDITTSIQNIDPENALML
SSSGSSNNNGSSNSSSNTGESATSQLPQVKMEAIDESLLETFSTPLLSPL
EIKTEKQQRQQQHQHQQQQQQQQQQQQQHQQQHQQQYQQQHYQQHYQQQH
LYQHHPSLALPGLPPAVDVVELQLQQQHQQQQHLQHNNSSSSSPKLATPG
DNSGNTSSYQQQYASQLVSGSGGGYLNGSSSNSYGYSWHSSQSFHTKYQI
HPPSAAASATASATATPTAQLGAQQQQQQQQQQQLQQLCPPAAPSTPSTS
SSSISSSSASSASRHMFVPPLTPPSSDPGSPGSSMVAAAAAAAAQRRTTP
PPPYQQGHVMGLINPPPTLQLLGGAATGSNNSCTTTLTTLTPASAIQQQQ
QQPQQQQVPQQQPPPTPRSSGGGRRGRHSHHQPGTAAHIASLMSVRTVRY
NRRNNPELEKRRIHHCDFVGCSKVYTKSSHLKAHQRIHTGEKPYTCQWPE
CEWRFARSDELTRHYRKHTGAKPFKCIVCERSFARSDHLALHMKRHLPKN
K*
BS04419.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:44:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dar1-PB | 751 | CG12029-PB | 1..751 | 1..751 | 4030 | 100 | Plus |
luna-PC | 570 | CG33473-PC | 208..570 | 361..747 | 515 | 36 | Plus |
luna-PD | 570 | CG33473-PD | 208..570 | 361..747 | 515 | 36 | Plus |
luna-PB | 570 | CG33473-PB | 208..570 | 361..747 | 515 | 36 | Plus |
sr-PE | 906 | CG7847-PE | 70..845 | 60..751 | 441 | 25.3 | Plus |
luna-PC | 570 | CG33473-PC | 157..466 | 237..534 | 175 | 25.4 | Plus |
luna-PD | 570 | CG33473-PD | 157..466 | 237..534 | 175 | 25.4 | Plus |
luna-PB | 570 | CG33473-PB | 157..466 | 237..534 | 175 | 25.4 | Plus |