Clone BS04419 Report

Search the DGRC for BS04419

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:44
Well:19
Vector:pDNR-Dual
Associated Gene/Transcriptdar1-RB
Protein status:BS04419.pep: full length peptide match
Sequenced Size:2288

Clone Sequence Records

BS04419.3prime Sequence

799 bp (797 high quality bases) assembled on 2005-12-01

> BS04419.3prime
ATGGTCTAGAAAGCTTTCATTTATTCTTGGGCAAGTGGCGCTTCATGTGG
AGCGCCAGGTGATCACTCCTCGCAAAGCTCCTCTCGCACACGATGCATTT
GAAGGGTTTGGCCCCCGTGTGCTTCCGGTAGTGCCTCGTTAGCTCGTCCG
ACCTGGCGAATCTCCACTCGCATTCCGGCCACTGGCAGGTGTATGGCTTC
TCACCCGTGTGTATCCTTTGATGGGCCTTCAGATGAGAGCTTTTTGTGTA
CACCTTGGAGCAGCCGACGAAATCACAGTGGTGGATGCGTCGCTTTTCCA
GCTCGGGATTATTTCGGCGGTTGTAACGCACCGTTCGTACGCTCATCAAA
CTGGCGATGTGGGCCGCCGTTCCCGGTTGGTGGTGCGAGTGCCGACCACG
CCTCCCGCCCCCCGAAGAGCGGGGGGTGGGCGGTGGCTGTTGCTGTGGCA
CCTGTTGCTGCTGTGGTTGTTGCTGCTGCTGCTGAATGGCACTGGCGGGT
GTTAAGGTGGTTAGGGTGGTGGTGCAACTGTTGTTGCTGCCTGTGGCTGC
ACCACCCAGAAGTTGCAGCGTTGGCGGTGGGTTAATTAGGCCCATCACAT
GACCTTGCTGGTAGGGCGGTGGTGGGGTGGTGCGTCGTTGGGCGGCTGCA
GCAGCTGCTGCTGCCACCATCGAGCTGCCAGGGCTTCCGGGATCCGAACT
TGGCGGGGTCAAAGGTGGCACGAACATATGGCGACTGGCAGAGGAGGCGG
AGGAAGAGGAAATGGACGAGGAGGAGGTCGAGGGAGTGCTGGGCGCCGC

BS04419.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:47:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG12029-PA 330 CG12029-RA 1..330 346..17 1650 100 Minus
CG12653-PA 1935 btd-RA 193..225 484..452 140 96.9 Minus
CG10325-PB 1773 abd-A-RB 162..193 484..453 135 96.8 Minus
CG32466-PB 2079 rn-RB 1582..1613 484..453 135 96.8 Minus
CG32778-PA 2829 CG32778-RA 1534..1565 484..453 135 96.8 Minus
CG32466-PA 2841 rn-RA 2344..2375 484..453 135 96.8 Minus
CG15532-PC 3243 hdc-RC 2203..2234 484..453 135 96.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:38:14
Subject Length Description Subject Range Query Range Score Percent Strand
dar1-RB 3526 CG12029-RB 2204..2986 799..17 3915 100 Minus
luna-RC 8446 CG33473-RC 2861..3098 273..35 270 74.5 Minus
luna-RD 3037 CG33473-RD 2290..2527 273..35 270 74.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:38:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3646886..3647421 799..264 2680 100 Minus
3L 28110227 3L 3652714..3652902 205..17 945 100 Minus
3L 28110227 3L 3649278..3649343 265..200 330 100 Minus
2R 25286936 2R 10983304..10983417 35..148 195 78.1 Plus
Blast to na_te.dros performed 2015-02-10 18:38:12
Subject Length Description Subject Range Query Range Score Percent Strand
G6 2042 G6 G6_DM 2042bp 1787..1849 553..491 108 63.5 Minus

BS04419.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:47:57 Download gff for BS04419.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12029-PA 1..330 17..346 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:09:15 Download gff for BS04419.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12029-PA 1..330 17..346 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:02:47 Download gff for BS04419.3prime
Subject Subject Range Query Range Percent Splice Strand
dar1-RB 2204..2986 17..799 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:52:57 Download gff for BS04419.3prime
Subject Subject Range Query Range Percent Splice Strand
dar1-RB 2204..2986 17..799 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:52:57 Download gff for BS04419.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 3646886..3647420 265..799 100 -> Minus
3L 3649279..3649338 205..264 100 -> Minus
3L 3652715..3652902 17..204 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:02:47 Download gff for BS04419.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3646886..3647420 265..799 100 -> Minus
arm_3L 3649279..3649338 205..264 100 -> Minus
arm_3L 3652715..3652902 17..204 100   Minus

BS04419.5prime Sequence

813 bp (746 high quality bases) assembled on 2005-12-01

> BS04419.5prime
GAAGTTATCAGTCGACATGCATACGGATATCATAATTGGTGATCAGTTTG
CCGCCAACAATAACTACTGGGTGATGCAGTCCCCGGAACTAGACTATCGG
CACGAGCTGATGGGTCGTCTGCATAAAATCGAGCCCGCCGATGTTGAGCT
TGAGGTTCTGGCAGCGGCCGCGGCAGCCGCAAACAACAACAACAACACCA
GCAGCAATAACAACCACAGCAGCAACAGCAGCAGCAACAACAGCAACGGC
AGCCAAACACCAAACGGCAACAACAACAGCAGTTTGGCAACCGGAGGCCA
TCAGCATCATCAGTTCCACCACCACCTGCACCACCACCACTCCCATCAGC
ACCACCACCAGCACCATCATTTGCACCAGCATCATTCGCACAGCCTTCAA
AGTGGCGAAAGTGGTGCATCGGAGGCGTGGCCCCACCTTCCCGCCCCCTC
GTACGCCAGCGATGTTCCACATGCGCAGCAGCAGCAACTTCAGCCCGCCG
GATCGCCGAATTCCAACTCAAACGGAGCCTACGGCTGTGCACCACTCTAC
GATGGAGCGCCCTACGAAGTGGCACTCGGCTACGGTGGTGCGGTGGTTGC
GTCAACGGGTGGTGCGACTTCCAGCGACAAGGAGTATTTATATGAAACCA
AAAACAAAGAGGCTCTCTACGCCGATCCGCTGGACGATCCCTACCAGCGA
CCCGTGCTCTGGGATGATATTACTACCTCAATCCAAAATATCGATCCGGA
GAACGCGCTCATGCTGAGCAGCAGCGGTAGCAGCAACAACAACGGCAGCA
GCAACAGCAGCAG

BS04419.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 16:47:39 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:01:17
Subject Length Description Subject Range Query Range Score Percent Strand
dar1-RB 3526 CG12029-RB 731..1527 17..813 3985 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:01:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3644639..3645206 77..644 2840 100 Plus
3L 28110227 3L 3645874..3646043 644..813 850 100 Plus
3L 28110227 3L 3627082..3627144 17..79 315 100 Plus
Blast to na_te.dros performed on 2015-02-11 17:01:13 has no hits.

BS04419.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:44:10 Download gff for BS04419.5prime
Subject Subject Range Query Range Percent Splice Strand
dar1-RB 731..1527 17..813 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:01:58 Download gff for BS04419.5prime
Subject Subject Range Query Range Percent Splice Strand
dar1-RB 731..1527 17..813 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:01:58 Download gff for BS04419.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 3627082..3627144 17..79 100 -> Plus
3L 3644642..3645206 80..644 100 -> Plus
3L 3645875..3646043 645..813 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:44:10 Download gff for BS04419.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3627082..3627144 17..79 100 -> Plus
arm_3L 3644642..3645206 80..644 100 -> Plus
arm_3L 3645875..3646043 645..813 100   Plus

BS04419.complete Sequence

2288 bp assembled on 2008-08-15

GenBank Submission: KX798855

> BS04419.complete
GAAGTTATCAGTCGACATGCATACGGATATCATAATTGGTGATCAGTTTG
CCGCCAACAATAACTACTGGGTGATGCAGTCCCCGGAACTAGACTATCGG
CACGAGCTGATGGGTCGTCTGCATAAAATCGAGCCCGCCGATGTTGAGCT
TGAGGTTCTGGCAGCGGCCGCGGCAGCCGCAAACAACAACAACAACACCA
GCAGCAATAACAACCACAGCAGCAACAGCAGCAGCAACAACAGCAACGGC
AGCCAAACACCAAACGGCAACAACAACAGCAGTTTGGCAACCGGAGGCCA
TCAGCATCATCAGTTCCACCACCACCTGCACCACCACCACTCCCATCAGC
ACCACCACCAGCACCATCATTTGCACCAGCATCATTCGCACAGCCTTCAA
AGTGGCGAAAGTGGTGCATCGGAGGCGTGGCCCCACCTTCCCGCCCCCTC
GTACGCCAGCGATGTTCCACATGCGCAGCAGCAGCAACTTCAGCCCGCCG
GATCGCCGAATTCCAACTCAAACGGAGCCTACGGCTGTGCACCACTCTAC
GATGGAGCGCCCTACGAAGTGGCACTCGGCTACGGTGGTGCGGTGGTTGC
GTCAACGGGTGGTGCGACTTCCAGCGACAAGGAGTATTTATATGAAACCA
AAAACAAAGAGGCTCTCTACGCCGATCCGCTGGACGATCCCTACCAGCGA
CCCGTGCTCTGGGATGATATTACTACCTCAATCCAAAATATCGATCCGGA
GAACGCGCTCATGCTGAGCAGCAGCGGTAGCAGCAACAACAACGGCAGCA
GCAACAGCAGCAGCAACACGGGCGAGTCTGCAACATCGCAGCTGCCGCAG
GTCAAGATGGAGGCGATCGATGAGAGCCTGCTCGAGACATTTTCGACCCC
ATTGCTCAGTCCCCTGGAGATAAAGACCGAGAAACAGCAGCGACAACAGC
AGCACCAGCACCAACAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAA
CACCAGCAACAACATCAGCAACAATACCAGCAGCAACACTATCAGCAACA
TTATCAGCAGCAGCACTTGTACCAGCATCATCCCAGCCTGGCGCTGCCTG
GCTTGCCACCCGCTGTCGACGTGGTAGAGTTGCAACTGCAGCAGCAGCAT
CAACAGCAGCAACATCTGCAGCACAACAACAGTAGCAGCAGCAGCCCCAA
GCTGGCGACCCCCGGCGACAACAGCGGCAACACCTCCTCCTATCAGCAAC
AGTACGCATCTCAATTGGTCTCCGGATCGGGAGGCGGCTATCTCAACGGT
AGCAGCAGCAACTCCTACGGCTACAGCTGGCACAGCAGTCAGTCCTTCCA
CACCAAATACCAAATACACCCGCCATCAGCCGCTGCTTCAGCCACCGCCT
CCGCCACTGCCACGCCCACAGCTCAACTCGGTGCTCAACAGCAGCAACAG
CAACAGCAGCAGCAACAGCTGCAGCAACTGTGCCCCCCTGCGGCGCCCAG
CACTCCCTCGACCTCCTCCTCGTCCATTTCCTCTTCCTCCGCCTCCTCTG
CCAGTCGCCATATGTTCGTGCCACCTTTGACCCCGCCAAGTTCGGATCCC
GGAAGCCCTGGCAGCTCGATGGTGGCAGCAGCAGCTGCTGCAGCCGCCCA
ACGACGCACCACCCCACCACCGCCCTACCAGCAAGGTCATGTGATGGGCC
TAATTAACCCACCGCCAACGCTGCAACTTCTGGGTGGTGCAGCCACAGGC
AGCAACAACAGTTGCACCACCACCCTAACCACCTTAACACCCGCCAGTGC
CATTCAGCAGCAGCAGCAACAACCACAGCAGCAACAGGTGCCACAGCAAC
AGCCACCGCCCACCCCCCGCTCTTCGGGGGGCGGGAGGCGTGGTCGGCAC
TCGCACCACCAACCGGGAACGGCGGCCCACATCGCCAGTTTGATGAGCGT
ACGAACGGTGCGTTACAACCGCCGAAATAATCCCGAGCTGGAAAAGCGAC
GCATCCACCACTGTGATTTCGTCGGCTGCTCCAAGGTGTACACAAAAAGC
TCTCATCTGAAGGCCCATCAAAGGATACACACGGGTGAGAAGCCATACAC
CTGCCAGTGGCCGGAATGCGAGTGGAGATTCGCCAGGTCGGACGAGCTAA
CGAGGCACTACCGGAAGCACACGGGGGCCAAACCCTTCAAATGCATCGTG
TGCGAGAGGAGCTTTGCGAGGAGTGATCACCTGGCGCTCCACATGAAGCG
CCACTTGCCCAAGAATAAATGAAAGCTTTCTAGACCAT

BS04419.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:56:00
Subject Length Description Subject Range Query Range Score Percent Strand
dar1-RB 2256 CG12029-PB 1..2256 17..2272 11280 100 Plus
luna-RC 1713 CG33473-PC 1475..1707 2022..2254 265 74.2 Plus
luna-RD 1713 CG33473-PD 1475..1707 2022..2254 265 74.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:56:01
Subject Length Description Subject Range Query Range Score Percent Strand
dar1-RB 3526 CG12029-RB 731..2986 17..2272 11280 100 Plus
luna-RC 8446 CG33473-RC 2866..3098 2022..2254 265 74.2 Plus
luna-RD 3037 CG33473-RD 2295..2527 2022..2254 265 74.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:55:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3645874..3646572 644..1342 3495 100 Plus
3L 28110227 3L 3646736..3647421 1340..2025 3430 100 Plus
3L 28110227 3L 3644639..3645206 77..644 2840 100 Plus
3L 28110227 3L 3652714..3652902 2084..2272 945 100 Plus
3L 28110227 3L 3649278..3649343 2024..2089 330 100 Plus
3L 28110227 3L 3627082..3627144 17..79 315 100 Plus
2R 25286936 2R 10983304..10983417 2254..2141 195 78.1 Minus
Blast to na_te.dros performed 2014-11-27 14:55:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6739..6923 1284..1472 206 60.4 Plus

BS04419.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:20:13 Download gff for BS04419.complete
Subject Subject Range Query Range Percent Splice Strand
CG12029-RB 209..2464 17..2272 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:34:55 Download gff for BS04419.complete
Subject Subject Range Query Range Percent Splice Strand
dar1-RB 731..2985 17..2271 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:52:50 Download gff for BS04419.complete
Subject Subject Range Query Range Percent Splice Strand
CG12029-RB 209..2463 17..2271 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:56:07 Download gff for BS04419.complete
Subject Subject Range Query Range Percent Splice Strand
dar1-RB 731..2985 17..2271 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:56:07 Download gff for BS04419.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3627082..3627144 17..79 100 -> Plus
3L 3644642..3645206 80..644 100 -> Plus
3L 3645875..3646572 645..1342 100 -> Plus
3L 3646739..3647420 1343..2024 100 -> Plus
3L 3649279..3649338 2025..2084 100 -> Plus
3L 3652715..3652901 2085..2271 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:34:55 Download gff for BS04419.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3627082..3627144 17..79 100 -> Plus
arm_3L 3644642..3645206 80..644 100 -> Plus
arm_3L 3645875..3646572 645..1342 100 -> Plus
arm_3L 3646739..3647420 1343..2024 100 -> Plus
arm_3L 3649279..3649338 2025..2084 100 -> Plus
arm_3L 3652715..3652901 2085..2271 100   Plus

BS04419.pep Sequence

Translation from 16 to 2271

> BS04419.pep
MHTDIIIGDQFAANNNYWVMQSPELDYRHELMGRLHKIEPADVELEVLAA
AAAAANNNNNTSSNNNHSSNSSSNNSNGSQTPNGNNNSSLATGGHQHHQF
HHHLHHHHSHQHHHQHHHLHQHHSHSLQSGESGASEAWPHLPAPSYASDV
PHAQQQQLQPAGSPNSNSNGAYGCAPLYDGAPYEVALGYGGAVVASTGGA
TSSDKEYLYETKNKEALYADPLDDPYQRPVLWDDITTSIQNIDPENALML
SSSGSSNNNGSSNSSSNTGESATSQLPQVKMEAIDESLLETFSTPLLSPL
EIKTEKQQRQQQHQHQQQQQQQQQQQQQHQQQHQQQYQQQHYQQHYQQQH
LYQHHPSLALPGLPPAVDVVELQLQQQHQQQQHLQHNNSSSSSPKLATPG
DNSGNTSSYQQQYASQLVSGSGGGYLNGSSSNSYGYSWHSSQSFHTKYQI
HPPSAAASATASATATPTAQLGAQQQQQQQQQQQLQQLCPPAAPSTPSTS
SSSISSSSASSASRHMFVPPLTPPSSDPGSPGSSMVAAAAAAAAQRRTTP
PPPYQQGHVMGLINPPPTLQLLGGAATGSNNSCTTTLTTLTPASAIQQQQ
QQPQQQQVPQQQPPPTPRSSGGGRRGRHSHHQPGTAAHIASLMSVRTVRY
NRRNNPELEKRRIHHCDFVGCSKVYTKSSHLKAHQRIHTGEKPYTCQWPE
CEWRFARSDELTRHYRKHTGAKPFKCIVCERSFARSDHLALHMKRHLPKN
K*

BS04419.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:44:29
Subject Length Description Subject Range Query Range Score Percent Strand
dar1-PB 751 CG12029-PB 1..751 1..751 4030 100 Plus
luna-PC 570 CG33473-PC 208..570 361..747 515 36 Plus
luna-PD 570 CG33473-PD 208..570 361..747 515 36 Plus
luna-PB 570 CG33473-PB 208..570 361..747 515 36 Plus
sr-PE 906 CG7847-PE 70..845 60..751 441 25.3 Plus
luna-PC 570 CG33473-PC 157..466 237..534 175 25.4 Plus
luna-PD 570 CG33473-PD 157..466 237..534 175 25.4 Plus
luna-PB 570 CG33473-PB 157..466 237..534 175 25.4 Plus