Clone BS04421 Report

Search the DGRC for BS04421

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:44
Well:21
Vector:pDNR-Dual
Associated Gene/TranscriptHGTX-RA
Protein status:BS04421.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04421.3prime Sequence

979 bp (885 high quality bases) assembled on 2005-12-01

> BS04421.3prime
ATGGTCTAGAAAGCTTTTAATGACGATAATTATCCTGCTGCTGCTGCGAG
GACCCAGAACTGTTGCTGCGACATCTCTTGTTCTGAGCCGGGGACTCGCC
CATATCGAGACTTTCGTTATCGCTATCCATGGTCTCGCTGCAATCGCCAT
CGTTATCGCCGCCCATATCGTCCTGTTTCCTTTTGGCCGTGGCCATTTCC
GCCGCATGCCGTTTGCGCCATTTGGTGCGACGATTCTGGAACCAGACCTT
AACCTGCGACTCGGACATTCCTAAGGCGTAAGCGAGCTTGGCACGCTCTG
GTCCGGCCAGATACTTGGTTTGCTCGAATGTCTTCTCCAGGGCGAAGATC
TGCTGACCACTGAATGTTGGGCGGGTGTGTTTCTTTTTGCCATCCTTGTC
GTTCGATGGATGATGCTGATGCGATTGAGACAGATTGGCGGACATCGTGT
TGGAGAGCCGTTCGCGCCACGCGATGGGATTGGCCACCAGTCCCTGTAAT
CCTGGCCAGTACAGGTGCGTGCGGTCCACTATGTGTCCGGCGTGGGTCTT
CAGTGGCGCCCCTTGGCTCTGCGATAGATACTGGGCCATTCCCGCTGCTG
CGGCGGCGATCGAGAAGCGGGGAATGCCAGCTCCTGTTAAAGCACTTAGA
CCCGCCGATGTCACCGGCGGTGGTTTGGAGAGGATGGTATCGATGCCGTG
CGGATTGGGTGCACCCTGGCTGTTGGTGTTCGTAGTCGTGGTGGAGGACG
ACGATGAGCTGCCACCGGATCCGCGATCACTGATCAAATGCGAATTCGGG
CTGTGGCTATAGGACAAGCCATTTGCCGACGCCGACGATCCACCGACTCC
TTGACCCTTCATTTCCGTGGTCATCGAGTGAAGAGCGGCCAGCGGGGGAC
CGAGAAAACTCAGTGGGAGCTTGTGGTCCATGTGGTTATTGTTGTTGTGA
CATCCCGGGTTTCCGGCATGGTTGGCATT

BS04421.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:47:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG13475-PA 1542 HGTX-RA 580..1542 979..17 4790 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:35:09
Subject Length Description Subject Range Query Range Score Percent Strand
HGTX-RA 3014 CG13475-RA 1407..2371 979..15 4810 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 13:35:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14597786..14598134 631..979 1730 99.7 Plus
3L 28110227 3L 14583865..14584099 15..249 1175 100 Plus
3L 28110227 3L 14589999..14590197 246..444 995 100 Plus
3L 28110227 3L 14595890..14596077 445..632 940 100 Plus
Blast to na_te.dros performed on 2015-02-06 13:35:05 has no hits.

BS04421.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:48:01 Download gff for BS04421.3prime
Subject Subject Range Query Range Percent Splice Strand
HGTX-PA 580..1542 17..979 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:09:19 Download gff for BS04421.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13475-PA 580..1542 17..979 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:54:27 Download gff for BS04421.3prime
Subject Subject Range Query Range Percent Splice Strand
HGTX-RA 1407..2379 7..979 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 14:01:09 Download gff for BS04421.3prime
Subject Subject Range Query Range Percent Splice Strand
HGTX-RA 1407..2379 7..979 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 14:01:09 Download gff for BS04421.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 14583857..14584097 7..247 98 <- Plus
3L 14590001..14590197 248..444 100 <- Plus
3L 14595890..14596075 445..630 100 <- Plus
3L 14597786..14598134 631..979 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:54:27 Download gff for BS04421.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14576957..14577197 7..247 98 <- Plus
arm_3L 14583101..14583297 248..444 100 <- Plus
arm_3L 14588990..14589175 445..630 100 <- Plus
arm_3L 14590886..14591234 631..979 99   Plus

BS04421.5prime Sequence

884 bp (808 high quality bases) assembled on 2005-11-29

> BS04421.5prime
GAAGTTATCAGTCGACATGGATCTGATAAATCCGTATATGCGCCATCATA
GTTTTGCGGCCGCCGCCCAGGGAAGTCCCCCGTCGGCGGCTCAACGTCAT
CATTTGGCGGCGGCCATGAGCAATGGCTTCGCGGATGTCCATGCCCATGC
GATGGCGGCGGCGGACTATCAACAACAGTTGGCCGATTACCACAGTGCAG
CGGCGGCAGCGGCCGTTTATGCCAACAACAATAATAATAATAACAATAAT
AGCAGTAACAACAACAACAGCAGTCCGCTAATGTTGCTAAAGGCGGCACA
TGGCGGAGGTCTCAAGGATTCGGACTCGCCATCGACGACACCGCCACCCG
CCTCTTCTAGACTCCATTCTGACTCCTCGCCATCTCCGCGATACGAACAC
AATTCCAGTCCCGGTGTGGACAGTGCCAAGTCGTATGCCTTGAGCCAGAG
GAGCAGCGGAGCGGAGGATCCATGCCAGACCAGCGAATCCGCCAGTCCAC
CGCCGCAGGGCCAGAACGACTACAGTCCCGAGAATCTCAGCAGCCAGAGG
GCAAAGTTCCAGCACCATCATGGAGTGAACCCACTGGCTTTGCACAATGC
CAACCATGCCGGAAACCCCGGATGTCACAACAACAATAACCACATGGACC
ACAAGCTCCCACTGAGTTTTCTCGGTCCCCCGCTGGCCGCTCTTCACTCG
ATGACCACGGAAATGAAGGGTCAAGGAGTCGGTGGATCGTCGGCGTCGGC
AAATGGCTTGTCCTATAGCCACAGCCCGAATTCGCATTTGATCAGTGATC
GCGGATCCGGTGGCAGCTCATCGTCGTCCTCCACCACGACTACGAACACC
AACAGCCAGGGTGCACCCAATCCGCACGGCATCG

BS04421.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:47:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG13475-PA 1542 HGTX-RA 1..868 17..884 4340 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:35:25
Subject Length Description Subject Range Query Range Score Percent Strand
HGTX-RA 3014 CG13475-RA 824..1695 13..884 4345 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:35:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14597846..14598717 884..13 4345 99.9 Minus
Blast to na_te.dros performed 2015-02-04 03:35:20
Subject Length Description Subject Range Query Range Score Percent Strand
transib3 2883 transib3 TRANSIB3 2883bp 329..355 653..627 108 88.9 Minus

BS04421.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:48:02 Download gff for BS04421.5prime
Subject Subject Range Query Range Percent Splice Strand
HGTX-PA 1..868 17..884 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:09:21 Download gff for BS04421.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13475-PA 1..868 17..884 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 06:54:01 Download gff for BS04421.5prime
Subject Subject Range Query Range Percent Splice Strand
HGTX-RA 824..1695 13..884 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:30:27 Download gff for BS04421.5prime
Subject Subject Range Query Range Percent Splice Strand
HGTX-RA 824..1695 13..884 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:30:27 Download gff for BS04421.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 14597846..14598717 13..884 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 06:54:01 Download gff for BS04421.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14590946..14591817 13..884 99   Minus

BS04421.complete Sequence

1574 bp (1574 high quality bases) assembled on 2005-09-13

GenBank Submission: FJ634934

> BS04421.complete
GAAGTTATCAGTCGACATGGATCTGATAAATCCGTATATGCGCCATCATA
GTTTTGCGGCCGCCGCCCAGGGAAGTCCCCCGTCGGCGGCTCAACGTCAT
CATTTGGCGGCGGCCATGAGCAATGGCTTCGCGGATGTCCATGCCCATGC
GATGGCGGCGGCGGACTATCAACAACAGTTGGCCGATTACCACAGTGCAG
CGGCGGCAGCGGCCGTTTATGCCAACAACAATAATAATAATAACAATAAT
AGCAGTAACAACAACAACAGCAGTCCGCTAATGTTGCTAAAGGCGGCACA
TGGCGGAGGTCTCAAGGATTCGGACTCGCCATCGACGACACCGCCACCCG
CCTCTTCTAGACTCCATTCTGACTCCTCGCCATCTCCGCGATACGAACAC
AATTCCAGTCCCGGTGTGGACAGTGCCAAGTCGTATGCCTTGAGCCAGAG
GAGCAGCGGAGCGGAGGATCCATGCCAGACCAGCGAATCCGCCAGTCCAC
CGCCGCAGGGCCAGAACGACTACAGTCCCGAGAATCTCAGCAGCCAGAGG
GCAAAGTTCCAGCACCATCATGGAGTGAACCCACTGGCTTTGCACAATGC
CAACCATGCCGGAAACCCCGGATGTCACAACAACAATAACCACATGGACC
ACAAGCTCCCACTGAGTTTTCTCGGTCCCCCGCTGGCCGCTCTTCACTCG
ATGACCACGGAAATGAAGGGTCAAGGAGTCGGTGGATCGTCGGCGTCGGC
AAATGGCTTGTCCTATAGCCACAGCCCGAATTCGCATTTGATCAGTGATC
GCGGATCCGGTGGCAGCTCATCGTCGTCCTCCACCACGACTACGAACACC
AACAGCCAGGGTGCACCCAATCCGCACGGCATCGATACCATCCTCTCCAA
ACCACCGCCGGTGACATCGGCGGGTCTAAGTGCTTTAACAGGAGCTGGCA
TTCCCCGCTTCTCGATCGCCGCCGCAGCAGCGGGAATGGCCCAGTATCTA
TCGCAGAGCCAAGGGGCGCCACTGAAGACCCACGCCGGACACATAGTGGA
CCGCACGCACCTGTACTGGCCAGGATTACAGGGACTGGTGGCCAATCCCA
TCGCGTGGCGCGAACGGCTCTCCAACACGATGTCCGCCAATCTGTCTCAA
TCGCATCAGCATCATCCATCGAACGACAAGGATGGCAAAAAGAAACACAC
CCGCCCAACATTCAGTGGTCAGCAGATCTTCGCCCTGGAGAAGACATTCG
AGCAAACCAAGTATCTGGCCGGACCAGAGCGTGCCAAGCTCGCTTACGCC
TTAGGAATGTCCGAGTCGCAGGTTAAGGTCTGGTTCCAGAATCGTCGCAC
CAAATGGCGCAAACGGCATGCGGCGGAAATGGCCACGGCCAAAAGGAAAC
AGGACGATATGGGCGGCGATAACGATGGCGATTGCAGCGAGACCATGGAT
AGCGATAACGAAAGTCTCGATATGGGCGAGTCCCCGGCTCAGAACAAGAG
ATGTCGCAGCAACAGTTCTGGGTCCTCGCAGCAGCAGCAGGATAATTATC
GTCATTAAAAGCTTTCTAGACCAT

BS04421.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:37:18
Subject Length Description Subject Range Query Range Score Percent Strand
HGTX-RA 1542 CG13475-PA 1..1542 17..1558 7710 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:37:19
Subject Length Description Subject Range Query Range Score Percent Strand
HGTX-RA 3014 CG13475-RA 824..2371 13..1560 7725 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:37:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14597786..14598717 944..13 4645 99.9 Minus
3L 28110227 3L 14583865..14584099 1560..1326 1175 100 Minus
3L 28110227 3L 14589999..14590197 1329..1131 995 100 Minus
3L 28110227 3L 14595890..14596077 1130..943 940 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:37:17 has no hits.

BS04421.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:32:31 Download gff for BS04421.complete
Subject Subject Range Query Range Percent Splice Strand
HGTX-RB 273..1818 13..1558 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:16:43 Download gff for BS04421.complete
Subject Subject Range Query Range Percent Splice Strand
HGTX-RB 273..1828 13..1568 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:29 Download gff for BS04421.complete
Subject Subject Range Query Range Percent Splice Strand
HGTX-RA 828..2367 17..1556 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:32:31 Download gff for BS04421.complete
Subject Subject Range Query Range Percent Splice Strand
HGTX-RB 273..1828 13..1568 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:22:46 Download gff for BS04421.complete
Subject Subject Range Query Range Percent Splice Strand
HGTX-RA 828..2367 17..1556 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:22:46 Download gff for BS04421.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14583869..14584097 1328..1556 100 <- Minus
3L 14590001..14590197 1131..1327 100 <- Minus
3L 14595890..14596075 945..1130 100 <- Minus
3L 14597786..14598713 17..944 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:29 Download gff for BS04421.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14576969..14577197 1328..1556 100 <- Minus
arm_3L 14583101..14583297 1131..1327 100 <- Minus
arm_3L 14588990..14589175 945..1130 100 <- Minus
arm_3L 14590886..14591813 17..944 100   Minus

BS04421.pep Sequence

Translation from 16 to 1557

> BS04421.pep
MDLINPYMRHHSFAAAAQGSPPSAAQRHHLAAAMSNGFADVHAHAMAAAD
YQQQLADYHSAAAAAAVYANNNNNNNNNSSNNNNSSPLMLLKAAHGGGLK
DSDSPSTTPPPASSRLHSDSSPSPRYEHNSSPGVDSAKSYALSQRSSGAE
DPCQTSESASPPPQGQNDYSPENLSSQRAKFQHHHGVNPLALHNANHAGN
PGCHNNNNHMDHKLPLSFLGPPLAALHSMTTEMKGQGVGGSSASANGLSY
SHSPNSHLISDRGSGGSSSSSSTTTTNTNSQGAPNPHGIDTILSKPPPVT
SAGLSALTGAGIPRFSIAAAAAGMAQYLSQSQGAPLKTHAGHIVDRTHLY
WPGLQGLVANPIAWRERLSNTMSANLSQSHQHHPSNDKDGKKKHTRPTFS
GQQIFALEKTFEQTKYLAGPERAKLAYALGMSESQVKVWFQNRRTKWRKR
HAAEMATAKRKQDDMGGDNDGDCSETMDSDNESLDMGESPAQNKRCRSNS
SGSSQQQQDNYRH*

BS04421.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:28:18
Subject Length Description Subject Range Query Range Score Percent Strand
HGTX-PA 513 CG13475-PA 1..513 1..513 2720 100 Plus
CG18599-PA 475 CG18599-PA 45..375 116..451 215 24.7 Plus
Vsx1-PB 837 CG4136-PB 221..464 235..456 208 28.3 Plus
Vsx1-PA 837 CG4136-PA 221..464 235..456 208 28.3 Plus
C15-PA 339 CG7937-PA 91..279 250..454 197 31.8 Plus