Clone Sequence Records
BS04422.3prime Sequence
903 bp (815 high quality bases) assembled on 2005-12-01
> BS04422.3prime
ATGGTCTAGAAAGCTTTCAGATCTTGCGCTGACTGTACATGTCGGAGATG
AGGCGCACAATGGTGATGTCGCCGATGGTCTTTCGGAAGAACAGCTCCTC
GATGGTGAAGCTTGAGACCTTGTGCATCAGCTGCACCACGCCCAAGAGCG
TCTGGAATCGCATGGGCTGCGAGGGATGGGTCCTCTGGATGTAGTTGTGC
AGCGCACTCCGGGCATCGTTGTGCATGGCCGCCACTTTTCCCGACTCCAG
AAGACCCCTGGATTCAGCAGAGGCCGAGGAGTTCGGGCTGCCGCTTCCTG
TCAGGATTGAGCTGTTGGCTAAATCCTCGGTAGAACTTGCCGACGGTGGT
GACTTACGGAAGAGCGAAATAGCCCTCAGACACTCGTACTCGGTGCTGTC
AATGTTCAGATGGCACAGTTGGTTCAGCACCTCCTGGAAGGCGTGCACCT
CGCGGGTCACCATGCCCATGATCTCCCGGTTGGCATTCTCGGACTCGTAG
ACGAACAGCAGCTGGGCGAAATTCATGGGCATTAGGTACTGGGCCATGGC
CAGGATGAAGAACTCCTTCCAGGACTCCTCCAGCAGGAGCAGCTGATCCG
GCATGGGCAGTTCGGTGAAGGCCCGTACGCTCTTGATCCAGTTGACGTTC
TTGAATAGGTGTTCCGCCGCGGTTTCCTTGATGTGCTCAGCTGCCATCAG
CGGAGGAGTGGGGGGCAGGGCCCGAGTGGCCAGGGCATTCATGTAGGCGG
CGGTGGGCGAGAAGAAACCGTGGTGTCCTTGGTGCACCGGGTGATGGGGC
ACTCGTGGCACGGATAAGTCCCAGACAGCGGCAGCCGATGGTGGCGGCTG
GAAGGCAGCCATGTGAGCAGGATGATGACCAGCCCTCTGGGGCAGGCCAG
GCA
BS04422.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:47:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1378-PA | 1359 | tll-RA | 473..1359 | 903..17 | 4410 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:09:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tll-RA | 1965 | CG1378-RA | 705..1593 | 903..15 | 4430 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:09:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30853140..30854028 | 903..15 | 4430 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-03 13:09:48 has no hits.
BS04422.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:48:03 Download gff for
BS04422.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1378-PA | 474..1359 | 17..902 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:09:23 Download gff for
BS04422.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1378-PA | 474..1359 | 17..902 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:57:28 Download gff for
BS04422.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tll-RA | 706..1603 | 5..902 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:47:20 Download gff for
BS04422.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tll-RA | 706..1603 | 5..902 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:47:20 Download gff for
BS04422.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30853141..30854038 | 5..902 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:57:28 Download gff for
BS04422.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26678863..26679760 | 5..902 | 99 | | Minus |
BS04422.5prime Sequence
867 bp (764 high quality bases) assembled on 2005-12-01
> BS04422.5prime
GAAGTTATCAGTCGACATGCAGTCGTCGGAGGGTTCACCAGACATGATGG
ATCAGAAATACAACAGCGTGCGTCTTTCGCCAGCGGCATCGAGTCGCATT
CTATACCATGTGCCCTGCAAAGTCTGCAGAGATCACAGCTCCGGCAAGCA
TTACGGCATCTACGCCTGTGATGGCTGCGCCGGATTCTTCAAGAGGAGCA
TTCGGAGATCCCGGCAGTATGTGTGCAAGTCGCAGAAGCAGGGACTCTGT
GTGGTGGACAAGACGCACAGGAACCAATGTAGGGCTTGCCGACTGAGGAA
GTGCTTTGAGGTCGGAATGAACAAGGATGCAGTGCAGCACGAGCGGGGAC
CGCGGAACTCCACTCTGCGTCGCCACATGGCCATGTACAAGGATGCCATG
ATGGGCGCCGGCGAGATGCCACAAATACCCGCCGAAATTCTGATGAACAC
GGCTGCCTTGACCGGCTTTCCTGGAGTACCGATGCCCATGCCTGGCCTGC
CCCAGAGGGCTGGTCATCATCCTGCTCACATGGCTGCCTTCCAGCCGCCA
CCATCGGCTGCCGCTGTCTTGGACTTATCCGTGCCACGAGTGCCCCATCA
CCCGGTGCACCAAGGACACCACGGTTTCTTCTCGCCCACCGCCGCCTACA
TGAATGCCCTGGCCACTCGGGCCCTGCCCCCCACTCCTCCGCTGATGGCA
GCTGAGCACATCAAGGAAACCGCGGCGGAACACCTATTCAAGAACGTCAA
CTGGATCAAGAGCGTACGGGCCTTCACCGAACTGCCCATGCCGGATCAGC
TGCTCCTGCTGGAGGAGTCCTGGAAGGAGTTCTTTCATCCTGGCCATGGC
CCAGTACCTAATGCCCA
BS04422.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:47:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1378-PA | 1359 | tll-RA | 1..818 | 17..834 | 4090 | 100 | Plus |
CG1378-PA | 1359 | tll-RA | 817..850 | 834..867 | 170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:35:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tll-RA | 1965 | CG1378-RA | 233..1082 | 17..867 | 4230 | 99.9 | Plus |
dsf-RB | 3537 | CG9019-RB | 289..379 | 113..203 | 215 | 82.4 | Plus |
dsf-RA | 3042 | CG9019-RA | 289..379 | 113..203 | 215 | 82.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:35:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30852744..30853517 | 93..867 | 3825 | 99.9 | Plus |
3R | 32079331 | 3R | 30852547..30852624 | 17..94 | 390 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:35:55 has no hits.
BS04422.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:48:04 Download gff for
BS04422.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1378-PA | 1..849 | 17..866 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:09:25 Download gff for
BS04422.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1378-PA | 1..849 | 17..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:02:36 Download gff for
BS04422.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tll-RA | 226..1081 | 9..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:35:46 Download gff for
BS04422.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tll-RA | 226..1081 | 9..866 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:35:46 Download gff for
BS04422.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30852540..30852622 | 9..92 | 96 | -> | Plus |
3R | 30852744..30853516 | 93..866 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:02:36 Download gff for
BS04422.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26678262..26678344 | 9..92 | 96 | -> | Plus |
arm_3R | 26678466..26679238 | 93..866 | 99 | | Plus |
BS04422.complete Sequence
1391 bp (1391 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ634935
> BS04422.complete
GAAGTTATCAGTCGACATGCAGTCGTCGGAGGGTTCACCAGACATGATGG
ATCAGAAATACAACAGCGTGCGTCTTTCGCCAGCGGCATCGAGTCGCATT
CTATACCATGTGCCCTGCAAAGTCTGCAGAGATCACAGCTCCGGCAAGCA
TTACGGCATCTACGCCTGTGATGGCTGCGCCGGATTCTTCAAGAGGAGCA
TTCGGAGATCCCGGCAGTATGTGTGCAAGTCGCAGAAGCAGGGACTCTGT
GTGGTGGACAAGACGCACAGGAACCAATGTAGGGCTTGCCGACTGAGGAA
GTGCTTTGAGGTCGGAATGAACAAGGATGCAGTGCAGCACGAGCGGGGAC
CGCGGAACTCCACTCTGCGTCGCCACATGGCCATGTACAAGGATGCCATG
ATGGGCGCCGGCGAGATGCCACAAATACCCGCCGAAATTCTGATGAACAC
GGCTGCCTTGACCGGCTTTCCTGGAGTACCGATGCCCATGCCTGGCCTGC
CCCAGAGGGCTGGTCATCATCCTGCTCACATGGCTGCCTTCCAGCCGCCA
CCATCGGCTGCCGCTGTCTTGGACTTATCCGTGCCACGAGTGCCCCATCA
CCCGGTGCACCAAGGACACCACGGTTTCTTCTCGCCCACCGCCGCCTACA
TGAATGCCCTGGCCACTCGGGCCCTGCCCCCCACTCCTCCGCTGATGGCA
GCTGAGCACATCAAGGAAACCGCGGCGGAACACCTATTCAAGAACGTCAA
CTGGATCAAGAGCGTACGGGCCTTCACCGAACTGCCCATGCCGGATCAGC
TGCTCCTGCTGGAGGAGTCCTGGAAGGAGTTCTTCATCCTGGCCATGGCC
CAGTACCTAATGCCCATGAATTTCGCCCAGCTGCTGTTCGTCTACGAGTC
CGAGAATGCCAACCGGGAGATCATGGGCATGGTGACCCGCGAGGTGCACG
CCTTCCAGGAGGTGCTGAACCAACTGTGCCATCTGAACATTGACAGCACC
GAGTACGAGTGTCTGAGGGCTATTTCGCTCTTCCGTAAGTCACCACCGTC
GGCAAGTTCTACCGAGGATTTAGCCAACAGCTCAATCCTGACAGGAAGCG
GCAGCCCGAACTCCTCGGCCTCTGCTGAATCCAGGGGTCTTCTGGAGTCG
GGAAAAGTGGCGGCCATGCACAACGATGCCCGGAGTGCGCTGCACAACTA
CATCCAGAGGACCCATCCCTCGCAGCCCATGCGATTCCAGACGCTCTTGG
GCGTGGTGCAGCTGATGCACAAGGTCTCAAGCTTCACCATCGAGGAGCTG
TTCTTCCGAAAGACCATCGGCGACATCACCATTGTGCGCCTCATCTCCGA
CATGTACAGTCAGCGCAAGATCTGAAAGCTTTCTAGACCAT
BS04422.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:16:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tll-RA | 1359 | CG1378-PA | 1..1359 | 17..1375 | 6795 | 100 | Plus |
dsf-RB | 2076 | CG9019-PB | 34..124 | 113..203 | 215 | 82.4 | Plus |
dsf-RA | 2076 | CG9019-PA | 34..124 | 113..203 | 215 | 82.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:17:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tll-RA | 1965 | CG1378-RA | 233..1593 | 17..1377 | 6805 | 100 | Plus |
dsf-RB | 3537 | CG9019-RB | 289..379 | 113..203 | 215 | 82.4 | Plus |
dsf-RA | 3042 | CG9019-RA | 289..379 | 113..203 | 215 | 82.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:16:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30852744..30854028 | 93..1377 | 6425 | 100 | Plus |
3R | 32079331 | 3R | 30852547..30852624 | 17..94 | 390 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:16:57 has no hits.
BS04422.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:32:19 Download gff for
BS04422.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tll-RA | 1..1359 | 17..1375 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:16:28 Download gff for
BS04422.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tll-RA | 226..1603 | 9..1387 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:06:03 Download gff for
BS04422.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tll-RA | 233..1590 | 17..1374 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:32:19 Download gff for
BS04422.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tll-RA | 226..1603 | 9..1387 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:18:34 Download gff for
BS04422.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tll-RA | 233..1590 | 17..1374 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:18:34 Download gff for
BS04422.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30852547..30852622 | 17..92 | 100 | -> | Plus |
3R | 30852744..30854025 | 93..1374 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:06:03 Download gff for
BS04422.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26678269..26678344 | 17..92 | 100 | -> | Plus |
arm_3R | 26678466..26679747 | 93..1374 | 100 | | Plus |
BS04422.pep Sequence
Translation from 16 to 1374
> BS04422.pep
MQSSEGSPDMMDQKYNSVRLSPAASSRILYHVPCKVCRDHSSGKHYGIYA
CDGCAGFFKRSIRRSRQYVCKSQKQGLCVVDKTHRNQCRACRLRKCFEVG
MNKDAVQHERGPRNSTLRRHMAMYKDAMMGAGEMPQIPAEILMNTAALTG
FPGVPMPMPGLPQRAGHHPAHMAAFQPPPSAAAVLDLSVPRVPHHPVHQG
HHGFFSPTAAYMNALATRALPPTPPLMAAEHIKETAAEHLFKNVNWIKSV
RAFTELPMPDQLLLLEESWKEFFILAMAQYLMPMNFAQLLFVYESENANR
EIMGMVTREVHAFQEVLNQLCHLNIDSTEYECLRAISLFRKSPPSASSTE
DLANSSILTGSGSPNSSASAESRGLLESGKVAAMHNDARSALHNYIQRTH
PSQPMRFQTLLGVVQLMHKVSSFTIEELFFRKTIGDITIVRLISDMYSQR
KI*
BS04422.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:31:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tll-PA | 452 | CG1378-PA | 1..452 | 1..452 | 2377 | 100 | Plus |
dsf-PB | 691 | CG9019-PB | 8..98 | 29..117 | 361 | 71.4 | Plus |
dsf-PA | 691 | CG9019-PA | 8..98 | 29..117 | 361 | 71.4 | Plus |
Hr51-PC | 582 | CG16801-PC | 111..250 | 34..195 | 316 | 45.1 | Plus |
dsf-PB | 691 | CG9019-PB | 491..683 | 226..448 | 270 | 30.2 | Plus |
dsf-PA | 691 | CG9019-PA | 491..683 | 226..448 | 270 | 30.2 | Plus |
Hr83-PA | 278 | CG10296-PA | 7..93 | 34..125 | 270 | 55.4 | Plus |
Hr51-PC | 582 | CG16801-PC | 373..580 | 223..447 | 229 | 28.5 | Plus |