Clone BS04422 Report

Search the DGRC for BS04422

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:44
Well:22
Vector:pDNR-Dual
Associated Gene/Transcripttll-RA
Protein status:BS04422.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04422.3prime Sequence

903 bp (815 high quality bases) assembled on 2005-12-01

> BS04422.3prime
ATGGTCTAGAAAGCTTTCAGATCTTGCGCTGACTGTACATGTCGGAGATG
AGGCGCACAATGGTGATGTCGCCGATGGTCTTTCGGAAGAACAGCTCCTC
GATGGTGAAGCTTGAGACCTTGTGCATCAGCTGCACCACGCCCAAGAGCG
TCTGGAATCGCATGGGCTGCGAGGGATGGGTCCTCTGGATGTAGTTGTGC
AGCGCACTCCGGGCATCGTTGTGCATGGCCGCCACTTTTCCCGACTCCAG
AAGACCCCTGGATTCAGCAGAGGCCGAGGAGTTCGGGCTGCCGCTTCCTG
TCAGGATTGAGCTGTTGGCTAAATCCTCGGTAGAACTTGCCGACGGTGGT
GACTTACGGAAGAGCGAAATAGCCCTCAGACACTCGTACTCGGTGCTGTC
AATGTTCAGATGGCACAGTTGGTTCAGCACCTCCTGGAAGGCGTGCACCT
CGCGGGTCACCATGCCCATGATCTCCCGGTTGGCATTCTCGGACTCGTAG
ACGAACAGCAGCTGGGCGAAATTCATGGGCATTAGGTACTGGGCCATGGC
CAGGATGAAGAACTCCTTCCAGGACTCCTCCAGCAGGAGCAGCTGATCCG
GCATGGGCAGTTCGGTGAAGGCCCGTACGCTCTTGATCCAGTTGACGTTC
TTGAATAGGTGTTCCGCCGCGGTTTCCTTGATGTGCTCAGCTGCCATCAG
CGGAGGAGTGGGGGGCAGGGCCCGAGTGGCCAGGGCATTCATGTAGGCGG
CGGTGGGCGAGAAGAAACCGTGGTGTCCTTGGTGCACCGGGTGATGGGGC
ACTCGTGGCACGGATAAGTCCCAGACAGCGGCAGCCGATGGTGGCGGCTG
GAAGGCAGCCATGTGAGCAGGATGATGACCAGCCCTCTGGGGCAGGCCAG
GCA

BS04422.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:47:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG1378-PA 1359 tll-RA 473..1359 903..17 4410 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:09:52
Subject Length Description Subject Range Query Range Score Percent Strand
tll-RA 1965 CG1378-RA 705..1593 903..15 4430 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:09:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30853140..30854028 903..15 4430 99.9 Minus
Blast to na_te.dros performed on 2015-02-03 13:09:48 has no hits.

BS04422.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:48:03 Download gff for BS04422.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1378-PA 474..1359 17..902 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:09:23 Download gff for BS04422.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1378-PA 474..1359 17..902 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:57:28 Download gff for BS04422.3prime
Subject Subject Range Query Range Percent Splice Strand
tll-RA 706..1603 5..902 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:47:20 Download gff for BS04422.3prime
Subject Subject Range Query Range Percent Splice Strand
tll-RA 706..1603 5..902 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:47:20 Download gff for BS04422.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 30853141..30854038 5..902 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:57:28 Download gff for BS04422.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26678863..26679760 5..902 99   Minus

BS04422.5prime Sequence

867 bp (764 high quality bases) assembled on 2005-12-01

> BS04422.5prime
GAAGTTATCAGTCGACATGCAGTCGTCGGAGGGTTCACCAGACATGATGG
ATCAGAAATACAACAGCGTGCGTCTTTCGCCAGCGGCATCGAGTCGCATT
CTATACCATGTGCCCTGCAAAGTCTGCAGAGATCACAGCTCCGGCAAGCA
TTACGGCATCTACGCCTGTGATGGCTGCGCCGGATTCTTCAAGAGGAGCA
TTCGGAGATCCCGGCAGTATGTGTGCAAGTCGCAGAAGCAGGGACTCTGT
GTGGTGGACAAGACGCACAGGAACCAATGTAGGGCTTGCCGACTGAGGAA
GTGCTTTGAGGTCGGAATGAACAAGGATGCAGTGCAGCACGAGCGGGGAC
CGCGGAACTCCACTCTGCGTCGCCACATGGCCATGTACAAGGATGCCATG
ATGGGCGCCGGCGAGATGCCACAAATACCCGCCGAAATTCTGATGAACAC
GGCTGCCTTGACCGGCTTTCCTGGAGTACCGATGCCCATGCCTGGCCTGC
CCCAGAGGGCTGGTCATCATCCTGCTCACATGGCTGCCTTCCAGCCGCCA
CCATCGGCTGCCGCTGTCTTGGACTTATCCGTGCCACGAGTGCCCCATCA
CCCGGTGCACCAAGGACACCACGGTTTCTTCTCGCCCACCGCCGCCTACA
TGAATGCCCTGGCCACTCGGGCCCTGCCCCCCACTCCTCCGCTGATGGCA
GCTGAGCACATCAAGGAAACCGCGGCGGAACACCTATTCAAGAACGTCAA
CTGGATCAAGAGCGTACGGGCCTTCACCGAACTGCCCATGCCGGATCAGC
TGCTCCTGCTGGAGGAGTCCTGGAAGGAGTTCTTTCATCCTGGCCATGGC
CCAGTACCTAATGCCCA

BS04422.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:47:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG1378-PA 1359 tll-RA 1..818 17..834 4090 100 Plus
CG1378-PA 1359 tll-RA 817..850 834..867 170 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:35:57
Subject Length Description Subject Range Query Range Score Percent Strand
tll-RA 1965 CG1378-RA 233..1082 17..867 4230 99.9 Plus
dsf-RB 3537 CG9019-RB 289..379 113..203 215 82.4 Plus
dsf-RA 3042 CG9019-RA 289..379 113..203 215 82.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:35:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30852744..30853517 93..867 3825 99.9 Plus
3R 32079331 3R 30852547..30852624 17..94 390 100 Plus
Blast to na_te.dros performed on 2015-02-12 01:35:55 has no hits.

BS04422.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:48:04 Download gff for BS04422.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1378-PA 1..849 17..866 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:09:25 Download gff for BS04422.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1378-PA 1..849 17..866 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:02:36 Download gff for BS04422.5prime
Subject Subject Range Query Range Percent Splice Strand
tll-RA 226..1081 9..866 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:35:46 Download gff for BS04422.5prime
Subject Subject Range Query Range Percent Splice Strand
tll-RA 226..1081 9..866 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:35:46 Download gff for BS04422.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30852540..30852622 9..92 96 -> Plus
3R 30852744..30853516 93..866 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:02:36 Download gff for BS04422.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26678262..26678344 9..92 96 -> Plus
arm_3R 26678466..26679238 93..866 99   Plus

BS04422.complete Sequence

1391 bp (1391 high quality bases) assembled on 2005-09-13

GenBank Submission: FJ634935

> BS04422.complete
GAAGTTATCAGTCGACATGCAGTCGTCGGAGGGTTCACCAGACATGATGG
ATCAGAAATACAACAGCGTGCGTCTTTCGCCAGCGGCATCGAGTCGCATT
CTATACCATGTGCCCTGCAAAGTCTGCAGAGATCACAGCTCCGGCAAGCA
TTACGGCATCTACGCCTGTGATGGCTGCGCCGGATTCTTCAAGAGGAGCA
TTCGGAGATCCCGGCAGTATGTGTGCAAGTCGCAGAAGCAGGGACTCTGT
GTGGTGGACAAGACGCACAGGAACCAATGTAGGGCTTGCCGACTGAGGAA
GTGCTTTGAGGTCGGAATGAACAAGGATGCAGTGCAGCACGAGCGGGGAC
CGCGGAACTCCACTCTGCGTCGCCACATGGCCATGTACAAGGATGCCATG
ATGGGCGCCGGCGAGATGCCACAAATACCCGCCGAAATTCTGATGAACAC
GGCTGCCTTGACCGGCTTTCCTGGAGTACCGATGCCCATGCCTGGCCTGC
CCCAGAGGGCTGGTCATCATCCTGCTCACATGGCTGCCTTCCAGCCGCCA
CCATCGGCTGCCGCTGTCTTGGACTTATCCGTGCCACGAGTGCCCCATCA
CCCGGTGCACCAAGGACACCACGGTTTCTTCTCGCCCACCGCCGCCTACA
TGAATGCCCTGGCCACTCGGGCCCTGCCCCCCACTCCTCCGCTGATGGCA
GCTGAGCACATCAAGGAAACCGCGGCGGAACACCTATTCAAGAACGTCAA
CTGGATCAAGAGCGTACGGGCCTTCACCGAACTGCCCATGCCGGATCAGC
TGCTCCTGCTGGAGGAGTCCTGGAAGGAGTTCTTCATCCTGGCCATGGCC
CAGTACCTAATGCCCATGAATTTCGCCCAGCTGCTGTTCGTCTACGAGTC
CGAGAATGCCAACCGGGAGATCATGGGCATGGTGACCCGCGAGGTGCACG
CCTTCCAGGAGGTGCTGAACCAACTGTGCCATCTGAACATTGACAGCACC
GAGTACGAGTGTCTGAGGGCTATTTCGCTCTTCCGTAAGTCACCACCGTC
GGCAAGTTCTACCGAGGATTTAGCCAACAGCTCAATCCTGACAGGAAGCG
GCAGCCCGAACTCCTCGGCCTCTGCTGAATCCAGGGGTCTTCTGGAGTCG
GGAAAAGTGGCGGCCATGCACAACGATGCCCGGAGTGCGCTGCACAACTA
CATCCAGAGGACCCATCCCTCGCAGCCCATGCGATTCCAGACGCTCTTGG
GCGTGGTGCAGCTGATGCACAAGGTCTCAAGCTTCACCATCGAGGAGCTG
TTCTTCCGAAAGACCATCGGCGACATCACCATTGTGCGCCTCATCTCCGA
CATGTACAGTCAGCGCAAGATCTGAAAGCTTTCTAGACCAT

BS04422.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:16:58
Subject Length Description Subject Range Query Range Score Percent Strand
tll-RA 1359 CG1378-PA 1..1359 17..1375 6795 100 Plus
dsf-RB 2076 CG9019-PB 34..124 113..203 215 82.4 Plus
dsf-RA 2076 CG9019-PA 34..124 113..203 215 82.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:17:00
Subject Length Description Subject Range Query Range Score Percent Strand
tll-RA 1965 CG1378-RA 233..1593 17..1377 6805 100 Plus
dsf-RB 3537 CG9019-RB 289..379 113..203 215 82.4 Plus
dsf-RA 3042 CG9019-RA 289..379 113..203 215 82.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:16:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30852744..30854028 93..1377 6425 100 Plus
3R 32079331 3R 30852547..30852624 17..94 390 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:16:57 has no hits.

BS04422.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:32:19 Download gff for BS04422.complete
Subject Subject Range Query Range Percent Splice Strand
tll-RA 1..1359 17..1375 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:16:28 Download gff for BS04422.complete
Subject Subject Range Query Range Percent Splice Strand
tll-RA 226..1603 9..1387 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:06:03 Download gff for BS04422.complete
Subject Subject Range Query Range Percent Splice Strand
tll-RA 233..1590 17..1374 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:32:19 Download gff for BS04422.complete
Subject Subject Range Query Range Percent Splice Strand
tll-RA 226..1603 9..1387 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:18:34 Download gff for BS04422.complete
Subject Subject Range Query Range Percent Splice Strand
tll-RA 233..1590 17..1374 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:18:34 Download gff for BS04422.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30852547..30852622 17..92 100 -> Plus
3R 30852744..30854025 93..1374 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:06:03 Download gff for BS04422.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26678269..26678344 17..92 100 -> Plus
arm_3R 26678466..26679747 93..1374 100   Plus

BS04422.pep Sequence

Translation from 16 to 1374

> BS04422.pep
MQSSEGSPDMMDQKYNSVRLSPAASSRILYHVPCKVCRDHSSGKHYGIYA
CDGCAGFFKRSIRRSRQYVCKSQKQGLCVVDKTHRNQCRACRLRKCFEVG
MNKDAVQHERGPRNSTLRRHMAMYKDAMMGAGEMPQIPAEILMNTAALTG
FPGVPMPMPGLPQRAGHHPAHMAAFQPPPSAAAVLDLSVPRVPHHPVHQG
HHGFFSPTAAYMNALATRALPPTPPLMAAEHIKETAAEHLFKNVNWIKSV
RAFTELPMPDQLLLLEESWKEFFILAMAQYLMPMNFAQLLFVYESENANR
EIMGMVTREVHAFQEVLNQLCHLNIDSTEYECLRAISLFRKSPPSASSTE
DLANSSILTGSGSPNSSASAESRGLLESGKVAAMHNDARSALHNYIQRTH
PSQPMRFQTLLGVVQLMHKVSSFTIEELFFRKTIGDITIVRLISDMYSQR
KI*

BS04422.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:31:27
Subject Length Description Subject Range Query Range Score Percent Strand
tll-PA 452 CG1378-PA 1..452 1..452 2377 100 Plus
dsf-PB 691 CG9019-PB 8..98 29..117 361 71.4 Plus
dsf-PA 691 CG9019-PA 8..98 29..117 361 71.4 Plus
Hr51-PC 582 CG16801-PC 111..250 34..195 316 45.1 Plus
dsf-PB 691 CG9019-PB 491..683 226..448 270 30.2 Plus
dsf-PA 691 CG9019-PA 491..683 226..448 270 30.2 Plus
Hr83-PA 278 CG10296-PA 7..93 34..125 270 55.4 Plus
Hr51-PC 582 CG16801-PC 373..580 223..447 229 28.5 Plus