Clone Sequence Records
BS04428.3prime Sequence
942 bp (771 high quality bases) assembled on 2005-12-01
> BS04428.3prime
ATGGTCTAGAAAGCTTTTAGGCCTCCTCATAGTTTTTCATTGAACCCCCA
TTGGCGGTCAGCTCCATTTTCACATTGACTTGCGTATTGACAGTCGAGTG
GGCGGGTGGAATGGGAATCGGGCTGTTGTTGTTGTGCTCCTCGCTGAGCT
TGAGCATATCACTTGGGTCCTGGATCTGCGCCTGACCCTGGGCGAACCGA
CGCACCTGCAGGAAGAGCCCACCGTTGTTCAGGAGTCGTGCCTGGTGCTC
CTGCGCCTTGGCCCTCAAACAGGCGATTGAGTTGTTTCTGAAGGCATCCG
GATCGTGTTCCATGAGGGCGGCAGCCAAGTTGTGGGCATGCAGTCCAGGT
GCTGTCGCCGTGGCCTGCTGCTGCTGCTGTTGCTGTTGCTGATGTTGCTG
CTGAGCAGCTGCTGCTGCCGCTGCCACGGCGGTGTTCATGATCATGTGGA
AGTCCTTGCTGGAGGCGGCCGCGCCGGCACCAGCGGCATTGGCGGCGTCC
AGCAGCGGATGATAGCTGGGCGGGGCACAGCCAGTAACCACCGCGCCAGC
GCCCAAGTAGAGCGACGCCTGTTGCTGTTGCTGCTGCTGCAGTTGCAGGT
GCTGCTGCTGCTGCGGCGAAGGTGAGCCCAGCTCGATGTGGGGACTGCTG
GAGCTGTTGGTGGTCGACGCTCCTGTGGGTGTGGTGGCCGCCGAGGAGGC
GGCTCCCGCATAGCCGCTCGTCGAGGTGGGCGGCGCCGAGGTTGAGGCGG
AGGTGGGGCAGCTACTGGGCGCAGGACTGACGACGTTCAGTGATTCGGTG
GAGGAGCTGAGGGCGTGGCAGCGGGAGCGTGAAAGATCCTCCGAGTGGGC
CGACTTCGATCCCGCCGAGTCCTCGTGGTCGCTCACCCCCGAGTCGTCCT
TGAGCGCTGACTGCGCCTCAATCGACTTGCGATGCATGCCTA
BS04428.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:47:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33980-PA | 1923 | CG33980-RA | 998..1923 | 942..17 | 4630 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 15:54:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vsx2-RA | 2358 | CG33980-RA | 1219..2144 | 942..17 | 4630 | 100 | Minus |
| Vsx2-RB | 2373 | CG33980-RB | 1237..2159 | 939..17 | 4615 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 15:54:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5529495..5530148 | 288..941 | 3270 | 100 | Plus |
| X | 23542271 | X | 5529141..5529414 | 17..290 | 1370 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 15:54:35 has no hits.
BS04428.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:48:05 Download gff for
BS04428.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33980-PA | 999..1923 | 17..941 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:09:26 Download gff for
BS04428.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33980-PA | 999..1923 | 17..941 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:18:31 Download gff for
BS04428.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vsx2-RA | 1220..2144 | 17..941 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:46:12 Download gff for
BS04428.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vsx2-RA | 1220..2144 | 17..941 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:46:12 Download gff for
BS04428.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5529141..5529411 | 17..287 | 100 | <- | Plus |
| X | 5529495..5530148 | 288..941 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:18:31 Download gff for
BS04428.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5423174..5423444 | 17..287 | 100 | <- | Plus |
| arm_X | 5423528..5424181 | 288..941 | 100 | | Plus |
BS04428.5prime Sequence
887 bp (811 high quality bases) assembled on 2005-12-01
> BS04428.5prime
GAAGTTATCAGTCGACATGCCGCAGCGTTCGCCATTTGCCATTCAGGAGC
TGCTGGGCTTGGCGGTGGCGGCGGCCACAGAAGCGCCAACCGATCTGACG
ACAACTGCCGGTGCAACGGTGGCAAAAGAGCGCCAAACGCCAACGCCGCC
AAAGACAACAAATGCCACAATGGCAACAGCAGCAACATCAGCAGCTACGG
CAGCAACACCAACAAATGCGGCCGAAGGCAATTTAACGAGCGTTTCGGAG
CCACAGCAGCAGCCGCAGCAGCAGCAACAAGAGCAGCAGCACCACCAGCC
GCACCACCATCAGTACAGGGAGCACCACCAAATGACCATGGCGGCCGCCT
CGCGAATGGCCTACTTCAATGCCCATGCGGCGGTGGCAGCGGCCTTTATG
CCCCACCAACTGGCCGCGGCGGTGCACCATCATCATCAGCATCAGCACCA
GCACCATCCACACCACCACCCGCACCACCCACACGGAGCCGTTGGCGGGC
CACCGCCGCCGCCGCCGATGCAGCACCACCACCCCCACCATCCGCACCAC
CCGCTGCTGCACGCGCAGGGATTTCCGCAGCTGAAAAGCTTCGCCGCCGG
AGCCGGAACTTGTTTGCCCGGATCGCTGGCGCCCAAGGACTTCGGCATGG
AGAGCTTGAATGGCTTCGGTGTGGGACCGAATAGCAAAAAGAAGAAAAAG
AAGCGACGACACAGCCGCACCATATTCACCAGCTACCAACTGGAGAAACT
GGAGGAGGCCTTCAAGGAAGCCCATTATCCCGATGTCTATGCCCGCGAAA
TGCTCTCGCTGAAGACAGAGCTGCCCGAGGATCGCATACAGGTGTGGTTC
CAAAAACCGACGCGCCAAGTGGGCGCAAGACGGAGAA
BS04428.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:47:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33980-PA | 1923 | CG33980-RA | 1..839 | 17..855 | 4195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:43:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vsx2-RB | 2373 | CG33980-RB | 222..1090 | 17..887 | 4305 | 99.8 | Plus |
| Vsx2-RA | 2358 | CG33980-RA | 222..1090 | 17..887 | 4305 | 99.8 | Plus |
| Vsx1-RB | 3633 | CG4136-RB | 1460..1656 | 689..887 | 330 | 78.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:43:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5559409..5559962 | 570..17 | 2770 | 100 | Minus |
| X | 23542271 | X | 5546722..5546946 | 844..620 | 1125 | 100 | Minus |
| X | 23542271 | X | 5553454..5553506 | 621..569 | 265 | 100 | Minus |
| X | 23542271 | X | 5606708..5606863 | 689..844 | 255 | 77.6 | Plus |
Blast to na_te.dros performed 2015-02-04 03:43:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2665 | 121..468 | 350 | 60.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2301..2544 | 57..308 | 340 | 62.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6714..6882 | 158..330 | 309 | 67.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6740..6916 | 156..331 | 298 | 66.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..6953 | 99..314 | 295 | 62.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2257..2474 | 112..331 | 275 | 62.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2291..2467 | 118..312 | 248 | 64.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2372..2908 | 68..588 | 245 | 52.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2605..3026 | 136..568 | 236 | 55.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2790..3018 | 141..359 | 221 | 61.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2765..2950 | 146..338 | 218 | 60.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6799..7201 | 68..475 | 217 | 56.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6526..6900 | 166..561 | 212 | 55 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2364..2549 | 102..288 | 211 | 61.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2787..2957 | 156..331 | 201 | 59.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6736..7009 | 62..331 | 190 | 56.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1485..1586 | 122..224 | 187 | 68.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2348..2520 | 68..237 | 181 | 59.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1106..1153 | 168..215 | 177 | 85.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6757..7018 | 62..330 | 165 | 58.1 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 972..1031 | 156..214 | 144 | 73.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1124..1166 | 174..216 | 134 | 79.1 | Plus |
| TART-A | 13424 | TART-A 13424bp | 10181..10296 | 175..288 | 133 | 63 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1030..1119 | 124..214 | 129 | 63.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1524..1596 | 141..214 | 124 | 64.9 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 6597..6757 | 174..325 | 123 | 60.7 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 8053..8213 | 174..325 | 123 | 60.7 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3238..3348 | 112..231 | 121 | 59.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1177 | 103..218 | 119 | 58 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9168..9222 | 161..214 | 119 | 70.9 | Plus |
| BS | 5142 | BS BS 5142bp | 2018..2073 | 150..205 | 118 | 67.9 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 152..192 | 174..214 | 115 | 75.6 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9182..9222 | 174..214 | 115 | 75.6 | Plus |
| BS | 5142 | BS BS 5142bp | 2018..2128 | 99..212 | 113 | 57 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7960..8015 | 173..231 | 108 | 67.8 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9404..9459 | 173..231 | 108 | 67.8 | Plus |
BS04428.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:48:06 Download gff for
BS04428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33980-PA | 1..867 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:09:28 Download gff for
BS04428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33980-PA | 1..867 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 05:03:25 Download gff for
BS04428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vsx2-RA | 209..1090 | 5..887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:46:16 Download gff for
BS04428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vsx2-RA | 209..1090 | 5..887 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:46:16 Download gff for
BS04428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5531401..5531444 | 842..887 | 95 | <- | Minus |
| X | 5546725..5546945 | 621..841 | 100 | <- | Minus |
| X | 5553455..5553505 | 570..620 | 100 | <- | Minus |
| X | 5559410..5559975 | 5..569 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 05:03:25 Download gff for
BS04428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5425434..5425477 | 842..887 | 95 | <- | Minus |
| arm_X | 5440758..5440978 | 621..841 | 100 | <- | Minus |
| arm_X | 5447488..5447538 | 570..620 | 100 | <- | Minus |
| arm_X | 5453443..5454008 | 5..569 | 99 | | Minus |
BS04428.complete Sequence
1955 bp assembled on 2008-01-02
GenBank Submission: KX799971
> BS04428.complete
GAAGTTATCAGTCGACATGCCGCAGCGTTCGCCATTTGCCATTCAGGAGC
TGCTGGGCTTGGCGGTGGCGGCGGCCACAGAAGCGCCAACCGATCTGACG
ACAACTGCCGGTGCAACGGTGGCAAAAGAGCGCCAAACGCCAACGCCGCC
AAAGACAACAAATGCCACAATGGCAACAGCAGCAACATCAGCAGCTACGG
CAGCAACACCAACAAATGCGGCCGAAGGCAATTTAACGAGCGTTTCGGAG
CCACAGCAGCAGCCGCAGCAGCAGCAACAAGAGCAGCAGCACCACCAGCC
GCACCACCATCAGTACAGGGAGCACCACCAAATGACCATGGCGGCCGCCT
CGCGAATGGCCTACTTCAATGCCCATGCGGCGGTGGCAGCGGCCTTTATG
CCCCACCAACTGGCCGCGGCGGTGCACCATCATCATCAGCATCAGCACCA
GCACCATCCACACCACCACCCGCACCACCCACACGGAGCCGTTGGCGGGC
CACCGCCGCCGCCGCCGATGCAGCACCACCACCCCCACCATCCGCACCAC
CCGCTGCTGCACGCGCAGGGATTTCCGCAGCTGAAAAGCTTCGCCGCCGG
AGCCGGAACTTGTTTGCCCGGATCGCTGGCGCCCAAGGACTTCGGCATGG
AGAGCTTGAATGGCTTCGGTGTGGGACCGAATAGCAAAAAGAAGAAAAAG
AAGCGACGACACAGCCGCACCATATTCACCAGCTACCAACTGGAGAAACT
GGAGGAGGCCTTCAAGGAAGCCCATTATCCCGATGTCTATGCCCGCGAAA
TGCTCTCGCTGAAGACAGAGCTGCCCGAGGATCGCATACAGGTGTGGTTC
CAAAACCGACGCGCCAAGTGGCGCAAGACGGAGAAAGTCTGGGGCGGCAG
CACGATCATGGCCGAGTACGGTCTCTATGGGGCAATGGTGCGGCACTCGC
TGCCTCTGCCGGACACGATCCTTAAGTCGGCCAAGGATAACGATGCGGTG
GCGCCCTGGCTACTAGGCATGCATCGCAAGTCGATTGAGGCGCAGTCAGC
GCTCAAGGACGACTCGGGGGTGAGCGACCACGAGGACTCGGCGGGATCGA
AGTCGGCCCACTCGGAGGATCTTTCACGCTCCCGCTGCCACGCCCTCAGC
TCCTCCACCGAATCACTGAACGTCGTCAGTCCTGCGCCCAGTAGCTGCCC
CACCTCCGCCTCAACCTCGGCGCCGCCCACCTCGACGAGCGGCTATGCGG
GAGCCGCCTCCTCGGCGGCCACCACACCCACAGGAGCGTCGACCACCAAC
AGCTCCAGCAGTCCCCACATCGAGCTGGGCTCACCTTCGCCGCAGCAGCA
GCAGCACCTGCAACTGCAGCAGCAGCAACAGCAACAGGCGTCGCTCTACT
TGGGCGCTGGCGCGGTGGTTACTGGCTGTGCCCCGCCCAGCTATCATCCG
CTGCTGGACGCCGCCAATGCCGCTGGTGCCGGCGCGGCCGCCTCCAGCAA
GGACTTCCACATGATCATGAACACCGCCGTGGCAGCGGCAGCAGCAGCTG
CTCAGCAGCAACATCAGCAACAGCAACAGCAGCAGCAGCAGGCCACGGCG
ACAGCACCTGGACTGCATGCCCACAACTTGGCTGCCGCCCTCATGGAACA
CGATCCGGATGCCTTCAGAAACAACTCAATCGCCTGTTTGAGGGCCAAGG
CGCAGGAGCACCAGGCACGACTCCTGAACAACGGTGGGCTCTTCCTGCAG
GTGCGTCGGTTCGCCCAGGGTCAGGCGCAGATCCAGGACCCAAGTGATAT
GCTCAAGCTCAGCGAGGAGCACAACAACAACAGCCCGATTCCCATTCCAC
CCGCCCACTCGACTGTCAATACGCAAGTCAATGTGAAAATGGAGCTGACC
GCCAATGGGGGTTCAATGAAAAACTATGAGGAGGCCTAAAAGCTTTCTAG
ACCAT
BS04428.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:45:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vsx2-RA | 1923 | CG33980-PA | 1..1923 | 17..1939 | 9615 | 100 | Plus |
| Vsx2-RB | 1938 | CG33980-PB | 1..1938 | 17..1939 | 9430 | 99.2 | Plus |
| Vsx1-RB | 2514 | CG4136-PB | 1168..1502 | 689..1023 | 655 | 79.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:45:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vsx2-RA | 2358 | CG33980-RA | 222..2144 | 17..1939 | 9615 | 100 | Plus |
| Vsx2-RB | 2373 | CG33980-RB | 222..2159 | 17..1939 | 9430 | 99.2 | Plus |
| Vsx1-RB | 3633 | CG4136-RB | 1460..1794 | 689..1023 | 655 | 79.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:45:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5529495..5530148 | 1668..1015 | 3270 | 100 | Minus |
| X | 23542271 | X | 5559409..5559962 | 570..17 | 2770 | 100 | Minus |
| X | 23542271 | X | 5529141..5529414 | 1939..1666 | 1370 | 100 | Minus |
| X | 23542271 | X | 5546722..5546946 | 844..620 | 1125 | 100 | Minus |
| X | 23542271 | X | 5531265..5531447 | 1021..839 | 900 | 99.5 | Minus |
| X | 23542271 | X | 5610842..5611026 | 839..1023 | 430 | 82.2 | Plus |
| X | 23542271 | X | 5553454..5553506 | 621..569 | 265 | 100 | Minus |
| X | 23542271 | X | 5606708..5606863 | 689..844 | 255 | 77.6 | Plus |
Blast to na_te.dros performed 2014-11-28 07:45:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2665 | 121..468 | 350 | 60.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2301..2544 | 57..308 | 340 | 62.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6714..6882 | 158..330 | 309 | 67.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6740..6916 | 156..331 | 298 | 66.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..6953 | 99..314 | 295 | 62.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2257..2474 | 112..331 | 275 | 62.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2291..2467 | 118..312 | 248 | 64.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2372..2908 | 68..588 | 245 | 52.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2605..3026 | 136..568 | 236 | 55.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2790..3018 | 141..359 | 221 | 61.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2765..2950 | 146..338 | 218 | 60.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6799..7201 | 68..475 | 217 | 56.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6526..6900 | 166..561 | 212 | 55 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2364..2549 | 102..288 | 211 | 61.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2787..2957 | 156..331 | 201 | 59.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6736..7009 | 62..331 | 190 | 56.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1485..1586 | 122..224 | 187 | 68.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2348..2520 | 68..237 | 181 | 59.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1106..1153 | 168..215 | 177 | 85.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6757..7018 | 62..330 | 165 | 58.1 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 972..1031 | 156..214 | 144 | 73.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1124..1166 | 174..216 | 134 | 79.1 | Plus |
| TART-A | 13424 | TART-A 13424bp | 10181..10296 | 175..288 | 133 | 63 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1030..1119 | 124..214 | 129 | 63.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1524..1596 | 141..214 | 124 | 64.9 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 6597..6757 | 174..325 | 123 | 60.7 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 8053..8213 | 174..325 | 123 | 60.7 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3238..3348 | 112..231 | 121 | 59.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1177 | 103..218 | 119 | 58 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9168..9222 | 161..214 | 119 | 70.9 | Plus |
| BS | 5142 | BS BS 5142bp | 2018..2073 | 150..205 | 118 | 67.9 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 152..192 | 174..214 | 115 | 75.6 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9182..9222 | 174..214 | 115 | 75.6 | Plus |
BS04428.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:05:05 Download gff for
BS04428.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33980-RA | 1..1923 | 17..1939 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:37:18 Download gff for
BS04428.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33980-RA | 222..2142 | 17..1937 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:12:02 Download gff for
BS04428.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vsx2-RA | 222..2142 | 17..1937 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:05:05 Download gff for
BS04428.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33980-RA | 209..2144 | 5..1939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:03:11 Download gff for
BS04428.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vsx2-RA | 222..2142 | 17..1937 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:03:11 Download gff for
BS04428.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5546725..5546945 | 621..841 | 100 | <- | Minus |
| X | 5553455..5553505 | 570..620 | 100 | <- | Minus |
| X | 5529143..5529411 | 1669..1937 | 100 | <- | Minus |
| X | 5529495..5530146 | 1017..1668 | 100 | <- | Minus |
| X | 5531270..5531444 | 842..1016 | 100 | <- | Minus |
| X | 5559410..5559962 | 17..569 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:12:02 Download gff for
BS04428.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5423176..5423444 | 1669..1937 | 100 | <- | Minus |
| arm_X | 5423528..5424179 | 1017..1668 | 100 | <- | Minus |
| arm_X | 5425303..5425477 | 842..1016 | 100 | <- | Minus |
| arm_X | 5440758..5440978 | 621..841 | 100 | <- | Minus |
| arm_X | 5447488..5447538 | 570..620 | 100 | <- | Minus |
| arm_X | 5453443..5453995 | 17..569 | 100 | | Minus |
BS04428.pep Sequence
Translation from 16 to 1938
> BS04428.pep
MPQRSPFAIQELLGLAVAAATEAPTDLTTTAGATVAKERQTPTPPKTTNA
TMATAATSAATAATPTNAAEGNLTSVSEPQQQPQQQQQEQQHHQPHHHQY
REHHQMTMAAASRMAYFNAHAAVAAAFMPHQLAAAVHHHHQHQHQHHPHH
HPHHPHGAVGGPPPPPPMQHHHPHHPHHPLLHAQGFPQLKSFAAGAGTCL
PGSLAPKDFGMESLNGFGVGPNSKKKKKKRRHSRTIFTSYQLEKLEEAFK
EAHYPDVYAREMLSLKTELPEDRIQVWFQNRRAKWRKTEKVWGGSTIMAE
YGLYGAMVRHSLPLPDTILKSAKDNDAVAPWLLGMHRKSIEAQSALKDDS
GVSDHEDSAGSKSAHSEDLSRSRCHALSSSTESLNVVSPAPSSCPTSAST
SAPPTSTSGYAGAASSAATTPTGASTTNSSSSPHIELGSPSPQQQQHLQL
QQQQQQQASLYLGAGAVVTGCAPPSYHPLLDAANAAGAGAAASSKDFHMI
MNTAVAAAAAAAQQQHQQQQQQQQQATATAPGLHAHNLAAALMEHDPDAF
RNNSIACLRAKAQEHQARLLNNGGLFLQVRRFAQGQAQIQDPSDMLKLSE
EHNNNSPIPIPPAHSTVNTQVNVKMELTANGGSMKNYEEA*
BS04428.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:40:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vsx2-PA | 640 | CG33980-PA | 1..640 | 1..640 | 3374 | 100 | Plus |
| Vsx2-PB | 645 | CG33980-PB | 1..645 | 1..640 | 3358 | 99.2 | Plus |
| Vsx1-PB | 837 | CG4136-PB | 289..703 | 103..544 | 677 | 41.2 | Plus |
| Vsx1-PA | 837 | CG4136-PA | 289..703 | 103..544 | 677 | 41.2 | Plus |
| Gsc-PC | 415 | CG2851-PC | 150..342 | 57..290 | 284 | 35.2 | Plus |
