Clone Sequence Records
BS04430.3prime Sequence
907 bp (832 high quality bases) assembled on 2005-12-01
> BS04430.3prime
ATGGTCTAGAAAGCTTTTAACTAAGGAATCTGTTCAATTCCTCTGGATCA
TCGTCCTCATATGATTCCATTTCTTCGCTTTGGAGGTGAACCAGTTTATG
AAGCTTCAGCAACTCCAGCGTCTTGAATCTCCGCCAGCAAAAGTCGCAGG
AGACCTGCCGCGCACTGTTACCGTCGTGAATTTTCCGGATGTGACTCTTC
AAGGTGCTATTCTCTCGAAATTGCCGGCTGCAGTGCGGACAACATAGTTT
CGGTTGGTCGTGAGTTCGCCGATGAACGGCCAGGGCGGAGCTGGTCTTCG
AGCTGTGCCCGCACAGCTCGCAGATATAGTTCCTTTGCCCCGCGTGCATG
GCCTGGTGCTGTTGGAAGTCCCACTTGGAAGGTGCATTGTAATCGCATCT
GCTGCATTGCCACTCCGGCCGCTTAAAGTGGTACCGTGCCTGGTGTTGTT
CTAGCTTGGAGGCGAGTGGAAAGCTCTGGTGGCACACATGACAAACATTC
GGATTGGGTCCCCCATGGACGCGGAATTTGTGCAGCCGTAGCAGGCGCTC
GTTAAGAAACCGTCGGTCGCACTCCTCGCAAATGGTCACTGATATGTGGT
TCGTGGGCATGAATTTCAGCAAACTGTGGTAGTACTTTGGATAGCGACAG
CGGAAGTCGGAGCTGCTCAACTGCATTACATACTGTCGCTCAAACCAGAC
TTGCAGGAAACGGGCACTGGCATTGACCACCTTTGGGTCCAACTGGAAGT
GAAATCGATGGAACAGGGCCTCTGCCACTTTTTGGGAACTATCCATGCGA
TCTTTTTTATTGATCCCGTGCTCAGTTATCCAGAAGAATTTGTGTCTCCG
CAGTTGCTGTATGAAGTACTGAATAACTCCGGGGCTGGTGCGCTGCAGGC
TGTAGAA
BS04430.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:47:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1663-PA | 1164 | CG1663-RA | 274..1164 | 907..17 | 4430 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:38:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1663-RA | 1439 | CG1663-RA | 478..1368 | 907..17 | 4440 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:38:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9837520..9838410 | 907..17 | 4440 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:38:03 has no hits.
BS04430.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:48:09 Download gff for
BS04430.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1663-PA | 276..1164 | 17..905 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:09:33 Download gff for
BS04430.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1663-PA | 276..1164 | 17..905 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:07:36 Download gff for
BS04430.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1663-RA | 478..1377 | 9..907 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:14:53 Download gff for
BS04430.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1663-RA | 478..1377 | 9..907 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:14:53 Download gff for
BS04430.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9837520..9838419 | 9..907 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:07:36 Download gff for
BS04430.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5725025..5725924 | 9..907 | 99 | | Minus |
BS04430.5prime Sequence
899 bp (803 high quality bases) assembled on 2005-12-01
> BS04430.5prime
GAAGTTATCAGTCGACATGAAGCACCTGGTTCAAAGGCATGGAAACGAAA
GTGGATTTAATGCAGATGAGGATGAGATCCAGGACGAGGTTCAGGTGGAG
ATGACCAATCTCTTGGCGGCGTCTATTGCTCAGGAATCCAAGTTGGCGGA
GGTACAGGAATCTTTCAAAAATGTAGAATTTATGGAAGAGGAGGTGGAAC
CAAACTTTTCACCAGAGAAAGAGCAGGGCCATGATGAGCTCGCAAGCAAT
AGCCACCATGACTACATCTCGAACCAACCCCACAAAGCCTTCTACAGCCT
GCAGCGCACCAGCCCCGGAGTTATTCAGTACTTCATACAGCAACTGCGGA
GACACAAATTCTTCTGGATAACTGAGCACGGGATCAATAAAAAAGATCGC
ATGGATAGTTCCCAAAAAGTGGCAGAGGCCCTGTTCCATCGATTTCACTT
CCAGTTGGACCCAAAGGTGGTCAATGCCAGTGCCCGTTTCCTGCAAGTCT
GGTTTGAGCGACAGTATGTAATGCAGTTGAGCAGCTCCGACTTCCGCTGT
CGCTATCCAAAGTACTACCACAGTTTGCTGAAATTCATGCCCACGAACCA
CATATCAGTGACCATTTGCGAGGAGTGCGACCGACGGTTTCTTAACGAGC
GCCTGCTACGGCTGCACAAATTCCGCGTCCATGGGGGACCCAATCCGAAT
GTTTGTCATGTGTGCCACCAGAGCTTTCCACTCGCCTCCAAGCTAGAACA
ACACCAGGCACGGTACCACTTTAAGCGGCCGGAGTGGCAATGCAGCAGAT
GCGATTATCATGCACCTTCCAAGTGGGACTTTCCACAGCACCAGGCCATG
CACGCGGGGCAAAGGAACTATATCTGCGAGCTGTGCGGGCACAGCTCGA
BS04430.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:47:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1663-PA | 1164 | CG1663-RA | 1..883 | 17..899 | 4315 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:14:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1663-RA | 1439 | CG1663-RA | 204..1087 | 16..899 | 4360 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:14:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9837490..9838129 | 260..899 | 3140 | 99.4 | Plus |
| 2R | 25286936 | 2R | 9837188..9837432 | 16..260 | 1225 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:14:35 has no hits.
BS04430.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:48:10 Download gff for
BS04430.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1663-PA | 1..882 | 17..898 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:09:34 Download gff for
BS04430.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1663-PA | 1..882 | 17..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:46:13 Download gff for
BS04430.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1663-RA | 204..1086 | 16..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:29:50 Download gff for
BS04430.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1663-RA | 204..1086 | 16..898 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:29:50 Download gff for
BS04430.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9837188..9837431 | 16..259 | 100 | -> | Plus |
| 2R | 9837490..9838128 | 260..898 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:46:13 Download gff for
BS04430.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5724693..5724936 | 16..259 | 100 | -> | Plus |
| arm_2R | 5724995..5725633 | 260..898 | 99 | | Plus |
BS04430.complete Sequence
1196 bp assembled on 2008-08-14
GenBank Submission: KX795737
> BS04430.complete
GAAGTTATCAGTCGACATGAAGCACCTGGTTCAAAGGCATGGAAACGAAA
GTGGATTTAATGCAGATGAGGATGAGATCCAGGACGAGGTTCAGGTGGAG
ATGACCAATCTCTTGGCGGCGTCTATTGCTCAGGAATCCAAGTTGGCGGA
GGTACAGGAATCTTTCAAAAATGTAGAATTTATGGAAGAGGAGGTGGAAC
CAAACTTTTCACCAGAGAAAGAGCAGGGCCATGATGAGCTCGCAAGCAAT
AGCCACCATGACTACATCTCGAACCAACCCCACAAAGCCTTCTACAGCCT
GCAGCGCACCAGCCCCGGAGTTATTCAGTACTTCATACAGCAACTGCGGA
GACACAAATTCTTCTGGATAACTGAGCACGGGATCAATAAAAAAGATCGC
ATGGATAGTTCCCAAAAAGTGGCAGAGGCCCTGTTCCATCGATTTCACTT
CCAGTTGGACCCAAAGGTGGTCAATGCCAGTGCCCGTTTCCTGCAAGTCT
GGTTTGAGCGACAGTATGTAATGCAGTTGAGCAGCTCCGACTTCCGCTGT
CGCTATCCAAAGTACTACCACAGTTTGCTGAAATTCATGCCCACGAACCA
CATATCAGTGACCATTTGCGAGGAGTGCGACCGACGGTTTCTTAACGAGC
GCCTGCTACGGCTGCACAAATTCCGCGTCCATGGGGGACCCAATCCGAAT
GTTTGTCATGTGTGCCACCAGAGCTTTCCACTCGCCTCCAAGCTAGAACA
ACACCAGGCACGGTACCACTTTAAGCGGCCGGAGTGGCAATGCAGCAGAT
GCGATTACAATGCACCTTCCAAGTGGGACTTCCAACAGCACCAGGCCATG
CACGCGGGGCAAAGGAACTATATCTGCGAGCTGTGCGGGCACAGCTCGAA
GACCAGCTCCGCCCTGGCCGTTCATCGGCGAACTCACGACCAACCGAAAC
TATGTTGTCCGCACTGCAGCCGGCAATTTCGAGAGAATAGCACCTTGAAG
AGTCACATCCGGAAAATTCACGACGGTAACAGTGCGCGGCAGGTCTCCTG
CGACTTTTGCTGGCGGAGATTCAAGACGCTGGAGTTGCTGAAGCTTCATA
AACTGGTTCACCTCCAAAGCGAAGAAATGGAATCATATGAGGACGATGAT
CCAGAGGAATTGAACAGATTCGTTAGTTAAAAGCTTTCTAGACCAT
BS04430.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:58:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1663-RA | 1164 | CG1663-PA | 1..1164 | 17..1180 | 5820 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:58:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1663-RA | 1439 | CG1663-RA | 204..1368 | 16..1180 | 5825 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:58:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9837490..9838410 | 260..1180 | 4605 | 100 | Plus |
| 2R | 25286936 | 2R | 9837188..9837432 | 16..260 | 1225 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:58:31 has no hits.
BS04430.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:50:53 Download gff for
BS04430.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1663-RA | 1..1164 | 17..1180 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:03:37 Download gff for
BS04430.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1663-RA | 205..1366 | 17..1178 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:56:29 Download gff for
BS04430.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1663-RA | 1..1162 | 17..1178 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:10 Download gff for
BS04430.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1663-RA | 205..1366 | 17..1178 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:10 Download gff for
BS04430.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9837189..9837431 | 17..259 | 100 | -> | Plus |
| 2R | 9837490..9838408 | 260..1178 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:03:37 Download gff for
BS04430.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5724694..5724936 | 17..259 | 100 | -> | Plus |
| arm_2R | 5724995..5725913 | 260..1178 | 100 | | Plus |
BS04430.pep Sequence
Translation from 16 to 1179
> BS04430.pep
MKHLVQRHGNESGFNADEDEIQDEVQVEMTNLLAASIAQESKLAEVQESF
KNVEFMEEEVEPNFSPEKEQGHDELASNSHHDYISNQPHKAFYSLQRTSP
GVIQYFIQQLRRHKFFWITEHGINKKDRMDSSQKVAEALFHRFHFQLDPK
VVNASARFLQVWFERQYVMQLSSSDFRCRYPKYYHSLLKFMPTNHISVTI
CEECDRRFLNERLLRLHKFRVHGGPNPNVCHVCHQSFPLASKLEQHQARY
HFKRPEWQCSRCDYNAPSKWDFQQHQAMHAGQRNYICELCGHSSKTSSAL
AVHRRTHDQPKLCCPHCSRQFRENSTLKSHIRKIHDGNSARQVSCDFCWR
RFKTLELLKLHKLVHLQSEEMESYEDDDPEELNRFVS*
BS04430.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:05:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1663-PA | 387 | CG1663-PA | 1..387 | 1..387 | 2112 | 100 | Plus |
| CG5245-PA | 501 | CG5245-PA | 84..245 | 201..367 | 234 | 32.1 | Plus |
| CG3407-PA | 714 | CG3407-PA | 497..658 | 201..365 | 233 | 31.1 | Plus |
| rgr-PA | 856 | CG8643-PA | 562..819 | 106..366 | 229 | 25 | Plus |
| rgr-PC | 889 | CG8643-PC | 595..852 | 106..366 | 229 | 25 | Plus |
| CG5245-PA | 501 | CG5245-PA | 107..305 | 164..372 | 205 | 28.7 | Plus |
| CG5245-PA | 501 | CG5245-PA | 278..438 | 201..365 | 201 | 28.9 | Plus |
| CG5245-PA | 501 | CG5245-PA | 250..417 | 201..372 | 200 | 28.3 | Plus |
| CG5245-PA | 501 | CG5245-PA | 195..383 | 201..366 | 169 | 26.4 | Plus |
| CG3407-PA | 714 | CG3407-PA | 463..606 | 223..369 | 165 | 30.9 | Plus |
| CG5245-PA | 501 | CG5245-PA | 60..194 | 241..372 | 154 | 26.8 | Plus |
