Clone Sequence Records
BS04433.3prime Sequence
882 bp (808 high quality bases) assembled on 2005-12-01
> BS04433.3prime
ATGGTCTAGAAAGCTTTTAGTGAGACTGCTTCATCTGCCAATGTGCACCG
TCATGGGGCAAAGGACTCTTCAGCAAGGGCGATATAAAAGTCCAAAGTCC
TCGTTGGCCCATTATTGTCTGGCAGTTCTTTCGGAAACCCAGATCGTAGG
TGCAATCAAAAATATTATAGTAGGTAGAGTTTTGGCTTAAAATCTGCATT
TGATATGCCAACATAAAGGCAGGCATATAGCTGGCGCTTATATTCAAGAG
GAAGGCAATGGTCTCAAAAGTATTGCCAGTATAATTTTGGAAAAAAGTCC
TAGTTATTAAATTAAAAATCACAGACGAGAGACTCATGAAGTTACCGCCA
TTCTGCAGGATAAACATACAAAATGTTGCAAAGCTTGTGACTAAGCCGAG
CGTTAAATAAAATGTGAACCAGAAGAAAAAGCGTTGATTATTGTGTCCAA
TGCAAGTGCCCGTGAATATACAGTGGTGGTCCCGTCTCAAAATGCAGGTG
TTGCACAAAACGCAGTGCCAGGATCGTGGCGATCTCAGCTTTTTACACGA
TTCGCAATAGTGCCACAGGGGCTCATCCTCTGGATTCGGGCATCGGGAGT
CCTTGGACAAGGTGTTTACCGATGAGCTAGTCATATAGCAGGCCAGCATG
TTACCAAGTATGTTGTGCGTTATGAAGGTGACCAATATCCAGTAGAGCTT
GTAAGCAATGTCGCCAAACACTTTGGGCGCAATGTAAAACATCTGCAGTG
AGAAGAAGAAAGCTGTGCTGCACAGGACGAAAACTATCGAAAGTGGATGC
ACTATCCTCACAAAGTTCTTCGGGTAGCGATTGGCAAAGTAATGGCAAAA
TCTATTCACGTAGCACATGTCGACTGATAACT
BS04433.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:47:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17195-PA | 852 | CG17195-RA | 1..852 | 868..17 | 4260 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:38:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17195-RA | 923 | CG17195-RA | 18..870 | 868..16 | 4265 | 100 | Minus |
CG17196-RC | 881 | CG17196-RC | 257..426 | 574..405 | 325 | 80.1 | Minus |
CG17196-RB | 875 | CG17196-RB | 251..420 | 574..405 | 325 | 80.1 | Minus |
CG17196-RC | 881 | CG17196-RC | 587..759 | 223..51 | 295 | 78.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:38:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25776329..25777181 | 16..868 | 4265 | 100 | Plus |
3R | 32079331 | 3R | 25775743..25775912 | 405..574 | 310 | 78.8 | Plus |
3R | 32079331 | 3R | 25775410..25775582 | 51..223 | 295 | 78 | Plus |
3R | 32079331 | 3R | 25774821..25774936 | 414..529 | 220 | 79.3 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:38:08 has no hits.
BS04433.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:48:14 Download gff for
BS04433.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17195-PA | 1..852 | 17..868 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:09:37 Download gff for
BS04433.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17195-PA | 1..852 | 17..868 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:02:45 Download gff for
BS04433.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17195-RA | 18..872 | 11..868 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:52:45 Download gff for
BS04433.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17195-RA | 18..872 | 11..868 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:52:45 Download gff for
BS04433.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25776327..25777181 | 11..868 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:02:45 Download gff for
BS04433.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21602049..21602903 | 11..868 | 99 | | Plus |
BS04433.5prime Sequence
883 bp (745 high quality bases) assembled on 2005-11-29
> BS04433.5prime
GAAGTTATCAGTCGACATGTGCTACGTGAATAGATTTTGCCATTACTTTG
CCAATCGCTACCCGAAGAACTTTGTGAGGATAGTGCATCCACTTTCGATA
GTTTTCGTCCTGTGCAGCACAGCTTTCTTCTTCTCACTGCAGATGTTTTA
CATTGCGCCCAAAGTGTTTGGCGACATTGCTTACAAGCTCTACTGGATAT
TGGTCACCTTCATAACGCACAACATACTTGGTAACATGCTGGCCTGCTAT
ATGACTAGCTCATCGGTAAACACCTTGTCCAAGGACTCCCGATGCCCGAA
TCCAGAGGATGAGCCCCTGTGGCACTATTGCGAATCGTGTAAAAAGCTGA
GATCGCCACGATCCTGGCACTGCGTTTTGTGCAACACCTGCATTTTGAGA
CGGGACCACCACTGTATATTCACGGGCACTTGCATTGGACACAATAATCA
ACGCTTTTTCTTCTGGTTCACATTTTATTTAACGCTCGGCTTAGTCACAA
GCTTTGCAACATTTTGTATGTTTATCCTGCAGAATGGCGGTAACTTCATG
AGTCTCTCGTCTGTGATTTTTAATTTAATAACTAGGACTTTTTTCCAAAA
TTATACTGGCAATACTTTTGAGACCATTGCCTTCCTCTTGAATATAAGCG
CCAGCTATATGCCTGCCTTTATGTTGGCATATCAAATGCAGATTTTAAGC
CAAAACTCTACCTACTATAATATTTTTGATTGCACCTACGATCTGGGTTT
CCGAAAGAACTGCCAGACAATAATGGGCCAACGAGGACTTTGGACTTTTA
TATCGCCCTTGCTGAAGAGTCCTTTGGCCCATGACGGTGCACATTGGCAG
ATGAAGCAGTCTCACTAAAAGCTTTCTAGACCA
BS04433.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:47:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17195-PA | 852 | CG17195-RA | 1..852 | 17..868 | 4235 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:32:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17195-RA | 923 | CG17195-RA | 18..870 | 17..869 | 4250 | 99.9 | Plus |
CG17196-RC | 881 | CG17196-RC | 257..426 | 311..480 | 325 | 80.1 | Plus |
CG17196-RB | 875 | CG17196-RB | 251..420 | 311..480 | 325 | 80.1 | Plus |
CG17196-RC | 881 | CG17196-RC | 587..759 | 662..834 | 280 | 78.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:32:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25776329..25777181 | 869..17 | 4250 | 99.9 | Minus |
3R | 32079331 | 3R | 25775743..25775912 | 480..311 | 310 | 78.8 | Minus |
3R | 32079331 | 3R | 25775410..25775582 | 834..662 | 280 | 77.5 | Minus |
3R | 32079331 | 3R | 25774821..25774936 | 471..356 | 220 | 79.3 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:32:29 has no hits.
BS04433.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:48:15 Download gff for
BS04433.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17195-PA | 1..852 | 17..868 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:09:39 Download gff for
BS04433.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17195-PA | 1..852 | 17..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:42:49 Download gff for
BS04433.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17195-RA | 18..872 | 17..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:54:07 Download gff for
BS04433.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17195-RA | 18..872 | 17..874 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:54:07 Download gff for
BS04433.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25776327..25777181 | 17..874 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:42:49 Download gff for
BS04433.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21602049..21602903 | 17..874 | 99 | | Minus |
BS04433.complete Sequence
884 bp (884 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ634936
> BS04433.complete
GAAGTTATCAGTCGACATGTGCTACGTGAATAGATTTTGCCATTACTTTG
CCAATCGCTACCCGAAGAACTTTGTGAGGATAGTGCATCCACTTTCGATA
GTTTTCGTCCTGTGCAGCACAGCTTTCTTCTTCTCACTGCAGATGTTTTA
CATTGCGCCCAAAGTGTTTGGCGACATTGCTTACAAGCTCTACTGGATAT
TGGTCACCTTCATAACGCACAACATACTTGGTAACATGCTGGCCTGCTAT
ATGACTAGCTCATCGGTAAACACCTTGTCCAAGGACTCCCGATGCCCGAA
TCCAGAGGATGAGCCCCTGTGGCACTATTGCGAATCGTGTAAAAAGCTGA
GATCGCCACGATCCTGGCACTGCGTTTTGTGCAACACCTGCATTTTGAGA
CGGGACCACCACTGTATATTCACGGGCACTTGCATTGGACACAATAATCA
ACGCTTTTTCTTCTGGTTCACATTTTATTTAACGCTCGGCTTAGTCACAA
GCTTTGCAACATTTTGTATGTTTATCCTGCAGAATGGCGGTAACTTCATG
AGTCTCTCGTCTGTGATTTTTAATTTAATAACTAGGACTTTTTTCCAAAA
TTATACTGGCAATACTTTTGAGACCATTGCCTTCCTCTTGAATATAAGCG
CCAGCTATATGCCTGCCTTTATGTTGGCATATCAAATGCAGATTTTAAGC
CAAAACTCTACCTACTATAATATTTTTGATTGCACCTACGATCTGGGTTT
CCGAAAGAACTGCCAGACAATAATGGGCCAACGAGGACTTTGGACTTTTA
TATCGCCCTTGCTGAAGAGTCCTTTGCCCCATGACGGTGCACATTGGCAG
ATGAAGCAGTCTCACTAAAAGCTTTCTAGACCAT
BS04433.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:42:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17195-RA | 852 | CG17195-PA | 1..852 | 17..868 | 4260 | 100 | Plus |
CG17196-RC | 762 | CG17196-PC | 226..395 | 311..480 | 310 | 78.8 | Plus |
CG17196-RB | 756 | CG17196-PB | 220..389 | 311..480 | 310 | 78.8 | Plus |
CG17196-RC | 762 | CG17196-PC | 556..728 | 662..834 | 295 | 78 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:42:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17195-RA | 923 | CG17195-RA | 18..870 | 17..869 | 4265 | 100 | Plus |
CG17196-RC | 881 | CG17196-RC | 257..426 | 311..480 | 310 | 78.8 | Plus |
CG17196-RB | 875 | CG17196-RB | 251..420 | 311..480 | 310 | 78.8 | Plus |
CG17196-RC | 881 | CG17196-RC | 587..759 | 662..834 | 295 | 78 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:41:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25776329..25777181 | 869..17 | 4265 | 100 | Minus |
3R | 32079331 | 3R | 25775743..25775912 | 480..311 | 310 | 78.8 | Minus |
3R | 32079331 | 3R | 25775410..25775582 | 834..662 | 295 | 78 | Minus |
3R | 32079331 | 3R | 25774821..25774936 | 471..356 | 220 | 79.3 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:42:00 has no hits.
BS04433.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:50:11 Download gff for
BS04433.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17195-RA | 1..852 | 17..868 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:38:49 Download gff for
BS04433.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17195-RA | 18..872 | 17..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:35:45 Download gff for
BS04433.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17195-RA | 18..867 | 17..866 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:50:11 Download gff for
BS04433.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17195-RA | 18..872 | 17..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:06:26 Download gff for
BS04433.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17195-RA | 18..867 | 17..866 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:06:26 Download gff for
BS04433.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25776332..25777181 | 17..866 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:35:45 Download gff for
BS04433.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21602054..21602903 | 17..866 | 100 | | Minus |
BS04433.pep Sequence
Translation from 16 to 867
> BS04433.pep
MCYVNRFCHYFANRYPKNFVRIVHPLSIVFVLCSTAFFFSLQMFYIAPKV
FGDIAYKLYWILVTFITHNILGNMLACYMTSSSVNTLSKDSRCPNPEDEP
LWHYCESCKKLRSPRSWHCVLCNTCILRRDHHCIFTGTCIGHNNQRFFFW
FTFYLTLGLVTSFATFCMFILQNGGNFMSLSSVIFNLITRTFFQNYTGNT
FETIAFLLNISASYMPAFMLAYQMQILSQNSTYYNIFDCTYDLGFRKNCQ
TIMGQRGLWTFISPLLKSPLPHDGAHWQMKQSH*
BS04433.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:46:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17195-PA | 283 | CG17195-PA | 1..283 | 1..283 | 1573 | 100 | Plus |
CG17196-PA | 276 | CG17196-PA | 1..274 | 1..281 | 825 | 54.4 | Plus |
CG17197-PB | 290 | CG17197-PB | 1..275 | 1..281 | 722 | 46.6 | Plus |
CG17196-PB | 251 | CG17196-PB | 1..249 | 1..281 | 715 | 49.8 | Plus |
CG17196-PC | 253 | CG17196-PC | 1..251 | 1..281 | 714 | 49.5 | Plus |