Clone BS04433 Report

Search the DGRC for BS04433

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:44
Well:33
Vector:pDNR-Dual
Associated Gene/TranscriptCG17195-RA
Protein status:BS04433.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04433.3prime Sequence

882 bp (808 high quality bases) assembled on 2005-12-01

> BS04433.3prime
ATGGTCTAGAAAGCTTTTAGTGAGACTGCTTCATCTGCCAATGTGCACCG
TCATGGGGCAAAGGACTCTTCAGCAAGGGCGATATAAAAGTCCAAAGTCC
TCGTTGGCCCATTATTGTCTGGCAGTTCTTTCGGAAACCCAGATCGTAGG
TGCAATCAAAAATATTATAGTAGGTAGAGTTTTGGCTTAAAATCTGCATT
TGATATGCCAACATAAAGGCAGGCATATAGCTGGCGCTTATATTCAAGAG
GAAGGCAATGGTCTCAAAAGTATTGCCAGTATAATTTTGGAAAAAAGTCC
TAGTTATTAAATTAAAAATCACAGACGAGAGACTCATGAAGTTACCGCCA
TTCTGCAGGATAAACATACAAAATGTTGCAAAGCTTGTGACTAAGCCGAG
CGTTAAATAAAATGTGAACCAGAAGAAAAAGCGTTGATTATTGTGTCCAA
TGCAAGTGCCCGTGAATATACAGTGGTGGTCCCGTCTCAAAATGCAGGTG
TTGCACAAAACGCAGTGCCAGGATCGTGGCGATCTCAGCTTTTTACACGA
TTCGCAATAGTGCCACAGGGGCTCATCCTCTGGATTCGGGCATCGGGAGT
CCTTGGACAAGGTGTTTACCGATGAGCTAGTCATATAGCAGGCCAGCATG
TTACCAAGTATGTTGTGCGTTATGAAGGTGACCAATATCCAGTAGAGCTT
GTAAGCAATGTCGCCAAACACTTTGGGCGCAATGTAAAACATCTGCAGTG
AGAAGAAGAAAGCTGTGCTGCACAGGACGAAAACTATCGAAAGTGGATGC
ACTATCCTCACAAAGTTCTTCGGGTAGCGATTGGCAAAGTAATGGCAAAA
TCTATTCACGTAGCACATGTCGACTGATAACT

BS04433.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:47:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG17195-PA 852 CG17195-RA 1..852 868..17 4260 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:38:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG17195-RA 923 CG17195-RA 18..870 868..16 4265 100 Minus
CG17196-RC 881 CG17196-RC 257..426 574..405 325 80.1 Minus
CG17196-RB 875 CG17196-RB 251..420 574..405 325 80.1 Minus
CG17196-RC 881 CG17196-RC 587..759 223..51 295 78.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:38:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25776329..25777181 16..868 4265 100 Plus
3R 32079331 3R 25775743..25775912 405..574 310 78.8 Plus
3R 32079331 3R 25775410..25775582 51..223 295 78 Plus
3R 32079331 3R 25774821..25774936 414..529 220 79.3 Plus
Blast to na_te.dros performed on 2015-02-10 18:38:08 has no hits.

BS04433.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:48:14 Download gff for BS04433.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17195-PA 1..852 17..868 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:09:37 Download gff for BS04433.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17195-PA 1..852 17..868 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:02:45 Download gff for BS04433.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17195-RA 18..872 11..868 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:52:45 Download gff for BS04433.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17195-RA 18..872 11..868 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:52:45 Download gff for BS04433.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25776327..25777181 11..868 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:02:45 Download gff for BS04433.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21602049..21602903 11..868 99   Plus

BS04433.5prime Sequence

883 bp (745 high quality bases) assembled on 2005-11-29

> BS04433.5prime
GAAGTTATCAGTCGACATGTGCTACGTGAATAGATTTTGCCATTACTTTG
CCAATCGCTACCCGAAGAACTTTGTGAGGATAGTGCATCCACTTTCGATA
GTTTTCGTCCTGTGCAGCACAGCTTTCTTCTTCTCACTGCAGATGTTTTA
CATTGCGCCCAAAGTGTTTGGCGACATTGCTTACAAGCTCTACTGGATAT
TGGTCACCTTCATAACGCACAACATACTTGGTAACATGCTGGCCTGCTAT
ATGACTAGCTCATCGGTAAACACCTTGTCCAAGGACTCCCGATGCCCGAA
TCCAGAGGATGAGCCCCTGTGGCACTATTGCGAATCGTGTAAAAAGCTGA
GATCGCCACGATCCTGGCACTGCGTTTTGTGCAACACCTGCATTTTGAGA
CGGGACCACCACTGTATATTCACGGGCACTTGCATTGGACACAATAATCA
ACGCTTTTTCTTCTGGTTCACATTTTATTTAACGCTCGGCTTAGTCACAA
GCTTTGCAACATTTTGTATGTTTATCCTGCAGAATGGCGGTAACTTCATG
AGTCTCTCGTCTGTGATTTTTAATTTAATAACTAGGACTTTTTTCCAAAA
TTATACTGGCAATACTTTTGAGACCATTGCCTTCCTCTTGAATATAAGCG
CCAGCTATATGCCTGCCTTTATGTTGGCATATCAAATGCAGATTTTAAGC
CAAAACTCTACCTACTATAATATTTTTGATTGCACCTACGATCTGGGTTT
CCGAAAGAACTGCCAGACAATAATGGGCCAACGAGGACTTTGGACTTTTA
TATCGCCCTTGCTGAAGAGTCCTTTGGCCCATGACGGTGCACATTGGCAG
ATGAAGCAGTCTCACTAAAAGCTTTCTAGACCA

BS04433.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:47:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG17195-PA 852 CG17195-RA 1..852 17..868 4235 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:32:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG17195-RA 923 CG17195-RA 18..870 17..869 4250 99.9 Plus
CG17196-RC 881 CG17196-RC 257..426 311..480 325 80.1 Plus
CG17196-RB 875 CG17196-RB 251..420 311..480 325 80.1 Plus
CG17196-RC 881 CG17196-RC 587..759 662..834 280 78.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:32:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25776329..25777181 869..17 4250 99.9 Minus
3R 32079331 3R 25775743..25775912 480..311 310 78.8 Minus
3R 32079331 3R 25775410..25775582 834..662 280 77.5 Minus
3R 32079331 3R 25774821..25774936 471..356 220 79.3 Minus
Blast to na_te.dros performed on 2015-02-10 21:32:29 has no hits.

BS04433.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:48:15 Download gff for BS04433.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17195-PA 1..852 17..868 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:09:39 Download gff for BS04433.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17195-PA 1..852 17..868 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:42:49 Download gff for BS04433.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17195-RA 18..872 17..874 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:54:07 Download gff for BS04433.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17195-RA 18..872 17..874 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:54:07 Download gff for BS04433.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25776327..25777181 17..874 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:42:49 Download gff for BS04433.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21602049..21602903 17..874 99   Minus

BS04433.complete Sequence

884 bp (884 high quality bases) assembled on 2005-09-13

GenBank Submission: FJ634936

> BS04433.complete
GAAGTTATCAGTCGACATGTGCTACGTGAATAGATTTTGCCATTACTTTG
CCAATCGCTACCCGAAGAACTTTGTGAGGATAGTGCATCCACTTTCGATA
GTTTTCGTCCTGTGCAGCACAGCTTTCTTCTTCTCACTGCAGATGTTTTA
CATTGCGCCCAAAGTGTTTGGCGACATTGCTTACAAGCTCTACTGGATAT
TGGTCACCTTCATAACGCACAACATACTTGGTAACATGCTGGCCTGCTAT
ATGACTAGCTCATCGGTAAACACCTTGTCCAAGGACTCCCGATGCCCGAA
TCCAGAGGATGAGCCCCTGTGGCACTATTGCGAATCGTGTAAAAAGCTGA
GATCGCCACGATCCTGGCACTGCGTTTTGTGCAACACCTGCATTTTGAGA
CGGGACCACCACTGTATATTCACGGGCACTTGCATTGGACACAATAATCA
ACGCTTTTTCTTCTGGTTCACATTTTATTTAACGCTCGGCTTAGTCACAA
GCTTTGCAACATTTTGTATGTTTATCCTGCAGAATGGCGGTAACTTCATG
AGTCTCTCGTCTGTGATTTTTAATTTAATAACTAGGACTTTTTTCCAAAA
TTATACTGGCAATACTTTTGAGACCATTGCCTTCCTCTTGAATATAAGCG
CCAGCTATATGCCTGCCTTTATGTTGGCATATCAAATGCAGATTTTAAGC
CAAAACTCTACCTACTATAATATTTTTGATTGCACCTACGATCTGGGTTT
CCGAAAGAACTGCCAGACAATAATGGGCCAACGAGGACTTTGGACTTTTA
TATCGCCCTTGCTGAAGAGTCCTTTGCCCCATGACGGTGCACATTGGCAG
ATGAAGCAGTCTCACTAAAAGCTTTCTAGACCAT

BS04433.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:42:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG17195-RA 852 CG17195-PA 1..852 17..868 4260 100 Plus
CG17196-RC 762 CG17196-PC 226..395 311..480 310 78.8 Plus
CG17196-RB 756 CG17196-PB 220..389 311..480 310 78.8 Plus
CG17196-RC 762 CG17196-PC 556..728 662..834 295 78 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:42:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG17195-RA 923 CG17195-RA 18..870 17..869 4265 100 Plus
CG17196-RC 881 CG17196-RC 257..426 311..480 310 78.8 Plus
CG17196-RB 875 CG17196-RB 251..420 311..480 310 78.8 Plus
CG17196-RC 881 CG17196-RC 587..759 662..834 295 78 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:41:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25776329..25777181 869..17 4265 100 Minus
3R 32079331 3R 25775743..25775912 480..311 310 78.8 Minus
3R 32079331 3R 25775410..25775582 834..662 295 78 Minus
3R 32079331 3R 25774821..25774936 471..356 220 79.3 Minus
Blast to na_te.dros performed on 2014-11-27 23:42:00 has no hits.

BS04433.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:50:11 Download gff for BS04433.complete
Subject Subject Range Query Range Percent Splice Strand
CG17195-RA 1..852 17..868 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:38:49 Download gff for BS04433.complete
Subject Subject Range Query Range Percent Splice Strand
CG17195-RA 18..872 17..874 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:35:45 Download gff for BS04433.complete
Subject Subject Range Query Range Percent Splice Strand
CG17195-RA 18..867 17..866 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:50:11 Download gff for BS04433.complete
Subject Subject Range Query Range Percent Splice Strand
CG17195-RA 18..872 17..874 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:06:26 Download gff for BS04433.complete
Subject Subject Range Query Range Percent Splice Strand
CG17195-RA 18..867 17..866 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:06:26 Download gff for BS04433.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25776332..25777181 17..866 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:35:45 Download gff for BS04433.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21602054..21602903 17..866 100   Minus

BS04433.pep Sequence

Translation from 16 to 867

> BS04433.pep
MCYVNRFCHYFANRYPKNFVRIVHPLSIVFVLCSTAFFFSLQMFYIAPKV
FGDIAYKLYWILVTFITHNILGNMLACYMTSSSVNTLSKDSRCPNPEDEP
LWHYCESCKKLRSPRSWHCVLCNTCILRRDHHCIFTGTCIGHNNQRFFFW
FTFYLTLGLVTSFATFCMFILQNGGNFMSLSSVIFNLITRTFFQNYTGNT
FETIAFLLNISASYMPAFMLAYQMQILSQNSTYYNIFDCTYDLGFRKNCQ
TIMGQRGLWTFISPLLKSPLPHDGAHWQMKQSH*

BS04433.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:46:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG17195-PA 283 CG17195-PA 1..283 1..283 1573 100 Plus
CG17196-PA 276 CG17196-PA 1..274 1..281 825 54.4 Plus
CG17197-PB 290 CG17197-PB 1..275 1..281 722 46.6 Plus
CG17196-PB 251 CG17196-PB 1..249 1..281 715 49.8 Plus
CG17196-PC 253 CG17196-PC 1..251 1..281 714 49.5 Plus