Clone BS04435 Report

Search the DGRC for BS04435

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:44
Well:35
Vector:pDNR-Dual
Associated Gene/TranscriptCG17197-RB
Protein status:BS04435.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04435.3prime Sequence

903 bp (734 high quality bases) assembled on 2005-12-01

> BS04435.3prime
ATGGTCTAGAAAGCTTTCAATCGGATACACGGAGAAACTGTAATTTTGGT
GAATGATGCTGAACACGTTTGATCTTCCACTGGGCACCATCATGGGGCAG
AGGACTCTTAACGGTGGGTGAGAGGAAAGTCCAAAAGCCTTTTCCGCCCA
AAATCAGCTTGAAATTCTCCCACAAGCCCAGATCGTAGGTATCACTGTAA
AACTTATGCAAAGTGCCATTATTTTTAAGTACAGATAATTGCATAAGCAC
CGAAGATACAGGGGCTGCAAATACGTAGGTGTTTAGTATAAGAGTGATGA
CCAGCCAAAATGGAGGTAAGTTATCCCTAGGGATATTTAGGAATATCAGG
TCCGAATAGCTAAAATACTTTAGGGTGGCAATAATATGGGTAGCCAAGGC
CACACCAGTTCCCAAAGCCATGAAGAGGGTGAACCAGAAAAAGTATCTCT
GATTATTGTGTCCGACGCAACTGGCAGTGAAAATGCAGTGGCGGTCCCGC
TTCAGAATGCAGCACTTGCACAATATACAGTGCCAGGATCTTGGAGGCAT
TAGTTTTTCACAAACATCGCAGTAATGCCACTGGTGCTCCTCTTCCGGCT
CCGGAATTTGCCGATCCTTTGGCAGGCTCTCCACCGAAGTGCTTGTGATA
TGACACGCAAGCATATTGCCAAAGATATTATATGTTATAAAGATTGCCAC
TAGCCAGCCGAGCTTGTACATGAATCCTTGAACATCAAACAATTGGGGTA
CCACGTAAAACATTTGCAGGACCACAAAAAAGATCGTTGTCACGATTACG
AATAGTACTGCGGTCGGATGGGAGATTCGAACGAATATCTTTGGATTTCG
ACGCGCCCAGTACTTGGTGCAGGCCCATATCAAACACATGTCGACTGATA
ACT

BS04435.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:47:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG17197-PA 951 CG17197-RA 1..824 889..66 4095 99.8 Minus
CG17197-PA 951 CG17197-RA 902..951 66..17 250 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:32:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG17197-RB 1958 CG17197-RB 89..961 889..17 4350 99.9 Minus
CG17198-RB 1958 CG17198-RB 89..961 889..17 4350 99.9 Minus
CG17196-RC 881 CG17196-RC 221..412 625..434 465 82.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:32:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25774458..25775281 66..889 4105 99.9 Plus
3R 32079331 3R 25775757..25775948 434..625 465 82.8 Plus
3R 32079331 3R 25774331..25774380 17..66 250 100 Plus
3R 32079331 3R 25776727..25776842 429..544 220 79.3 Plus
3R 32079331 3R 25777733..25777835 447..549 215 80.6 Plus
3L 28110227 3L 16861157..16861246 541..452 210 82.2 Minus
Blast to na_te.dros performed on 2015-02-10 22:32:48 has no hits.

BS04435.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:48:16 Download gff for BS04435.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17197-PA 1..824 66..889 99   Minus
CG17197-PA 903..951 17..65 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:09:40 Download gff for BS04435.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17197-PA 1..824 66..889 99 -> Minus
CG17197-PA 903..951 17..65 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:27:00 Download gff for BS04435.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17197-RB 89..972 8..889 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:14:10 Download gff for BS04435.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17198-RB 89..972 8..889 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:14:10 Download gff for BS04435.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25774320..25774379 8..65 93 <- Plus
3R 25774458..25775281 66..889 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:27:00 Download gff for BS04435.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21600042..21600101 8..65 93 <- Plus
arm_3R 21600180..21601003 66..889 99   Plus

BS04435.5prime Sequence

793 bp (734 high quality bases) assembled on 2005-11-29

> BS04435.5prime
GAAGTTATCAGTCGACATGTGTTTGATATGGGCCTGCACCAAGTACTTGG
CGCGTCGAAATCCAAAGATATTCGTTCGAATCTCCCATCCGACCGCAGTA
CTATTCGTAATCGTGACAACGATCTTTTTTGTGGTCCTGCAAATGTTTTA
CGTGGTACCCCAATTGTTTGATGTTCAAGGATTCATGTACAAGCTCGGCT
GGCTAGTGGCAATCTTTATAACATATAATATCTTTGGCAATATGCTTGCG
TGTCATATCACAAGCACTTCGGTGGAGAGCCTGCCAAAGGATCGGCAAAT
TCCGGAGCCGGAAGAGGAGCACCAGTGGCATTACTGCGATGTTTGTGAAA
AACTAATGCCTCCAAGATCCTGGCACTGTATATTGTGCAAGTGCTGCATT
CTGAAGCGGGACCGCCACTGCATTTTCACTGCCAGTTGCGTCGGACACAA
TAATCAGAGATACTTTTTCTGGTTCACCCTCTTCATGGCTTTGGGAACTG
GTGTGGCCTTGGCTACCCATATTATTGCCACCCTAAAGTATTTTAGCTAT
TCGGACCTGATATTCCTAAATATCCCTAGGGATAACTTACCTCCATTTTG
GCTGGTCATCACTCTTATACTAAACACCTACGTATTTGCAGCCCCTGTAT
CTTCGGTGCTTATGCAATTATCTGTACTTAAAAATAATGGCACTTTGCAT
AAGTTTTACAGTGATACCTACGATCTGGGCTTGTGGGAGAATTTCAAGCT
GATTTTGGGCGGAAAGGCTTTTGGACTTTCCTCTCACCACCGT

BS04435.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:47:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG17197-PA 951 CG17197-RA 1..749 17..765 3745 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:17:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG17197-RB 1958 CG17197-RB 89..867 17..793 3845 99.7 Plus
CG17198-RB 1958 CG17198-RB 89..867 17..793 3845 99.7 Plus
CG17196-RC 881 CG17196-RC 221..412 281..472 465 82.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:17:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25774509..25775281 788..17 3815 99.9 Minus
3R 32079331 3R 25775757..25775948 472..281 465 82.8 Minus
3R 32079331 3R 25776727..25776842 477..362 220 79.3 Minus
3R 32079331 3R 25777733..25777835 459..357 215 80.6 Minus
3L 28110227 3L 16861157..16861246 365..454 210 82.2 Plus
Blast to na_te.dros performed on 2015-02-10 20:17:22 has no hits.

BS04435.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:48:17 Download gff for BS04435.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17197-PA 1..779 17..793 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:09:41 Download gff for BS04435.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17197-PA 1..779 17..793 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:43:00 Download gff for BS04435.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17197-RB 89..867 17..793 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:24:21 Download gff for BS04435.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17198-RB 89..867 17..793 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:24:21 Download gff for BS04435.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25774503..25775281 17..793 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:43:00 Download gff for BS04435.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21600225..21601003 17..793 99   Minus

BS04435.complete Sequence

905 bp (905 high quality bases) assembled on 2005-09-13

GenBank Submission: FJ634937

> BS04435.complete
GAAGTTATCAGTCGACATGTGTTTGATATGGGCCTGCACCAAGTACTTGG
CGCGTCGAAATCCAAAGATATTCGTTCGAATCTCCCATCCGACCGCAGTA
CTATTCGTAATCGTGACAACGATCTTTTTTGTGGTCCTGCAAATGTTTTA
CGTGGTACCCCAATTGTTTGATGTTCAAGGATTCATGTACAAGCTCGGCT
GGCTAGTGGCAATCTTTATAACATATAATATCTTTGGCAATATGCTTGCG
TGTCATATCACAAGCACTTCGGTGGAGAGCCTGCCAAAGGATCGGCAAAT
TCCGGAGCCGGAAGAGGAGCACCAGTGGCATTACTGCGATGTTTGTGAAA
AACTAATGCCTCCAAGATCCTGGCACTGTATATTGTGCAAGTGCTGCATT
CTGAAGCGGGACCGCCACTGCATTTTCACTGCCAGTTGCGTCGGACACAA
TAATCAGAGATACTTTTTCTGGTTCACCCTCTTCATGGCTTTGGGAACTG
GTGTGGCCTTGGCTACCCATATTATTGCCACCCTAAAGTATTTTAGCTAT
TCGGACCTGATATTCCTAAATATCCCTAGGGATAACTTACCTCCATTTTG
GCTGGTCATCACTCTTATACTAAACACCTACGTATTTGCAGCCCCTGTAT
CTTCGGTGCTTATGCAATTATCTGTACTTAAAAATAATGGCACTTTGCAT
AAGTTTTACAGTGATACCTACGATCTGGGCTTGTGGGAGAATTTCAAGCT
GATTTTGGGCGGAAAAGGCTTTTGGACTTTCCTCTCACCCACCGTTAAGA
GTCCTCTGCCCCATGATGGTGCCCAGTGGAAGATCAAACGTGTTCAGCAT
CATTCACCAAAATTACAGTTTCTCCGTGTATCCGATTGAAAGCTTTCTAG
ACCAT

BS04435.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:48:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG17197-RB 873 CG17197-PB 1..873 17..889 4365 100 Plus
CG17196-RC 762 CG17196-PC 190..381 281..472 465 82.8 Plus
CG17196-RB 756 CG17196-PB 184..375 281..472 465 82.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:48:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG17197-RB 1958 CG17197-RB 89..961 17..889 4365 100 Plus
CG17198-RB 1958 CG17198-RB 89..961 17..889 4365 100 Plus
CG17196-RC 881 CG17196-RC 221..412 281..472 465 82.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:48:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25774458..25775281 840..17 4120 100 Minus
3R 32079331 3R 25775757..25775948 472..281 465 82.8 Minus
3R 32079331 3R 25774331..25774380 889..840 250 100 Minus
3R 32079331 3R 25776727..25776842 477..362 220 79.3 Minus
3R 32079331 3R 25777733..25777835 459..357 215 80.6 Minus
3L 28110227 3L 16861157..16861246 365..454 210 82.2 Plus
Blast to na_te.dros performed on 2014-11-27 12:48:22 has no hits.

BS04435.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:32:20 Download gff for BS04435.complete
Subject Subject Range Query Range Percent Splice Strand
CG17197-RB 1..873 17..889 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:58:13 Download gff for BS04435.complete
Subject Subject Range Query Range Percent Splice Strand
CG17197-RB 89..972 17..898 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:46:09 Download gff for BS04435.complete
Subject Subject Range Query Range Percent Splice Strand
CG17197-RB 89..960 17..888 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:32:20 Download gff for BS04435.complete
Subject Subject Range Query Range Percent Splice Strand
CG17197-RB 89..972 17..898 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:05:03 Download gff for BS04435.complete
Subject Subject Range Query Range Percent Splice Strand
CG17198-RB 89..960 17..888 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:05:03 Download gff for BS04435.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25774332..25774379 841..888 100 <- Minus
3R 25774458..25775281 17..840 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:46:09 Download gff for BS04435.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21600054..21600101 841..888 100 <- Minus
arm_3R 21600180..21601003 17..840 100   Minus

BS04435.pep Sequence

Translation from 16 to 888

> BS04435.pep
MCLIWACTKYLARRNPKIFVRISHPTAVLFVIVTTIFFVVLQMFYVVPQL
FDVQGFMYKLGWLVAIFITYNIFGNMLACHITSTSVESLPKDRQIPEPEE
EHQWHYCDVCEKLMPPRSWHCILCKCCILKRDRHCIFTASCVGHNNQRYF
FWFTLFMALGTGVALATHIIATLKYFSYSDLIFLNIPRDNLPPFWLVITL
ILNTYVFAAPVSSVLMQLSVLKNNGTLHKFYSDTYDLGLWENFKLILGGK
GFWTFLSPTVKSPLPHDGAQWKIKRVQHHSPKLQFLRVSD*

BS04435.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:37:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG17197-PB 290 CG17197-PB 1..290 1..290 1588 100 Plus
CG17196-PA 276 CG17196-PA 1..274 1..275 744 48.9 Plus
CG13029-PC 288 CG13029-PC 1..283 1..275 740 46.6 Plus
CG17195-PA 283 CG17195-PA 1..281 1..275 722 46.6 Plus
CG17196-PC 253 CG17196-PC 20..251 43..275 658 50.4 Plus