Clone Sequence Records
BS04435.3prime Sequence
903 bp (734 high quality bases) assembled on 2005-12-01
> BS04435.3prime
ATGGTCTAGAAAGCTTTCAATCGGATACACGGAGAAACTGTAATTTTGGT
GAATGATGCTGAACACGTTTGATCTTCCACTGGGCACCATCATGGGGCAG
AGGACTCTTAACGGTGGGTGAGAGGAAAGTCCAAAAGCCTTTTCCGCCCA
AAATCAGCTTGAAATTCTCCCACAAGCCCAGATCGTAGGTATCACTGTAA
AACTTATGCAAAGTGCCATTATTTTTAAGTACAGATAATTGCATAAGCAC
CGAAGATACAGGGGCTGCAAATACGTAGGTGTTTAGTATAAGAGTGATGA
CCAGCCAAAATGGAGGTAAGTTATCCCTAGGGATATTTAGGAATATCAGG
TCCGAATAGCTAAAATACTTTAGGGTGGCAATAATATGGGTAGCCAAGGC
CACACCAGTTCCCAAAGCCATGAAGAGGGTGAACCAGAAAAAGTATCTCT
GATTATTGTGTCCGACGCAACTGGCAGTGAAAATGCAGTGGCGGTCCCGC
TTCAGAATGCAGCACTTGCACAATATACAGTGCCAGGATCTTGGAGGCAT
TAGTTTTTCACAAACATCGCAGTAATGCCACTGGTGCTCCTCTTCCGGCT
CCGGAATTTGCCGATCCTTTGGCAGGCTCTCCACCGAAGTGCTTGTGATA
TGACACGCAAGCATATTGCCAAAGATATTATATGTTATAAAGATTGCCAC
TAGCCAGCCGAGCTTGTACATGAATCCTTGAACATCAAACAATTGGGGTA
CCACGTAAAACATTTGCAGGACCACAAAAAAGATCGTTGTCACGATTACG
AATAGTACTGCGGTCGGATGGGAGATTCGAACGAATATCTTTGGATTTCG
ACGCGCCCAGTACTTGGTGCAGGCCCATATCAAACACATGTCGACTGATA
ACT
BS04435.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:47:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17197-PA | 951 | CG17197-RA | 1..824 | 889..66 | 4095 | 99.8 | Minus |
CG17197-PA | 951 | CG17197-RA | 902..951 | 66..17 | 250 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:32:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17197-RB | 1958 | CG17197-RB | 89..961 | 889..17 | 4350 | 99.9 | Minus |
CG17198-RB | 1958 | CG17198-RB | 89..961 | 889..17 | 4350 | 99.9 | Minus |
CG17196-RC | 881 | CG17196-RC | 221..412 | 625..434 | 465 | 82.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:32:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25774458..25775281 | 66..889 | 4105 | 99.9 | Plus |
3R | 32079331 | 3R | 25775757..25775948 | 434..625 | 465 | 82.8 | Plus |
3R | 32079331 | 3R | 25774331..25774380 | 17..66 | 250 | 100 | Plus |
3R | 32079331 | 3R | 25776727..25776842 | 429..544 | 220 | 79.3 | Plus |
3R | 32079331 | 3R | 25777733..25777835 | 447..549 | 215 | 80.6 | Plus |
3L | 28110227 | 3L | 16861157..16861246 | 541..452 | 210 | 82.2 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:32:48 has no hits.
BS04435.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:48:16 Download gff for
BS04435.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17197-PA | 1..824 | 66..889 | 99 | | Minus |
CG17197-PA | 903..951 | 17..65 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:09:40 Download gff for
BS04435.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17197-PA | 1..824 | 66..889 | 99 | -> | Minus |
CG17197-PA | 903..951 | 17..65 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:27:00 Download gff for
BS04435.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17197-RB | 89..972 | 8..889 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:14:10 Download gff for
BS04435.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17198-RB | 89..972 | 8..889 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:14:10 Download gff for
BS04435.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25774320..25774379 | 8..65 | 93 | <- | Plus |
3R | 25774458..25775281 | 66..889 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:27:00 Download gff for
BS04435.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21600042..21600101 | 8..65 | 93 | <- | Plus |
arm_3R | 21600180..21601003 | 66..889 | 99 | | Plus |
BS04435.5prime Sequence
793 bp (734 high quality bases) assembled on 2005-11-29
> BS04435.5prime
GAAGTTATCAGTCGACATGTGTTTGATATGGGCCTGCACCAAGTACTTGG
CGCGTCGAAATCCAAAGATATTCGTTCGAATCTCCCATCCGACCGCAGTA
CTATTCGTAATCGTGACAACGATCTTTTTTGTGGTCCTGCAAATGTTTTA
CGTGGTACCCCAATTGTTTGATGTTCAAGGATTCATGTACAAGCTCGGCT
GGCTAGTGGCAATCTTTATAACATATAATATCTTTGGCAATATGCTTGCG
TGTCATATCACAAGCACTTCGGTGGAGAGCCTGCCAAAGGATCGGCAAAT
TCCGGAGCCGGAAGAGGAGCACCAGTGGCATTACTGCGATGTTTGTGAAA
AACTAATGCCTCCAAGATCCTGGCACTGTATATTGTGCAAGTGCTGCATT
CTGAAGCGGGACCGCCACTGCATTTTCACTGCCAGTTGCGTCGGACACAA
TAATCAGAGATACTTTTTCTGGTTCACCCTCTTCATGGCTTTGGGAACTG
GTGTGGCCTTGGCTACCCATATTATTGCCACCCTAAAGTATTTTAGCTAT
TCGGACCTGATATTCCTAAATATCCCTAGGGATAACTTACCTCCATTTTG
GCTGGTCATCACTCTTATACTAAACACCTACGTATTTGCAGCCCCTGTAT
CTTCGGTGCTTATGCAATTATCTGTACTTAAAAATAATGGCACTTTGCAT
AAGTTTTACAGTGATACCTACGATCTGGGCTTGTGGGAGAATTTCAAGCT
GATTTTGGGCGGAAAGGCTTTTGGACTTTCCTCTCACCACCGT
BS04435.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:47:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17197-PA | 951 | CG17197-RA | 1..749 | 17..765 | 3745 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:17:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17197-RB | 1958 | CG17197-RB | 89..867 | 17..793 | 3845 | 99.7 | Plus |
CG17198-RB | 1958 | CG17198-RB | 89..867 | 17..793 | 3845 | 99.7 | Plus |
CG17196-RC | 881 | CG17196-RC | 221..412 | 281..472 | 465 | 82.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:17:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25774509..25775281 | 788..17 | 3815 | 99.9 | Minus |
3R | 32079331 | 3R | 25775757..25775948 | 472..281 | 465 | 82.8 | Minus |
3R | 32079331 | 3R | 25776727..25776842 | 477..362 | 220 | 79.3 | Minus |
3R | 32079331 | 3R | 25777733..25777835 | 459..357 | 215 | 80.6 | Minus |
3L | 28110227 | 3L | 16861157..16861246 | 365..454 | 210 | 82.2 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:17:22 has no hits.
BS04435.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:48:17 Download gff for
BS04435.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17197-PA | 1..779 | 17..793 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:09:41 Download gff for
BS04435.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17197-PA | 1..779 | 17..793 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:43:00 Download gff for
BS04435.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17197-RB | 89..867 | 17..793 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:24:21 Download gff for
BS04435.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17198-RB | 89..867 | 17..793 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:24:21 Download gff for
BS04435.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25774503..25775281 | 17..793 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:43:00 Download gff for
BS04435.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21600225..21601003 | 17..793 | 99 | | Minus |
BS04435.complete Sequence
905 bp (905 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ634937
> BS04435.complete
GAAGTTATCAGTCGACATGTGTTTGATATGGGCCTGCACCAAGTACTTGG
CGCGTCGAAATCCAAAGATATTCGTTCGAATCTCCCATCCGACCGCAGTA
CTATTCGTAATCGTGACAACGATCTTTTTTGTGGTCCTGCAAATGTTTTA
CGTGGTACCCCAATTGTTTGATGTTCAAGGATTCATGTACAAGCTCGGCT
GGCTAGTGGCAATCTTTATAACATATAATATCTTTGGCAATATGCTTGCG
TGTCATATCACAAGCACTTCGGTGGAGAGCCTGCCAAAGGATCGGCAAAT
TCCGGAGCCGGAAGAGGAGCACCAGTGGCATTACTGCGATGTTTGTGAAA
AACTAATGCCTCCAAGATCCTGGCACTGTATATTGTGCAAGTGCTGCATT
CTGAAGCGGGACCGCCACTGCATTTTCACTGCCAGTTGCGTCGGACACAA
TAATCAGAGATACTTTTTCTGGTTCACCCTCTTCATGGCTTTGGGAACTG
GTGTGGCCTTGGCTACCCATATTATTGCCACCCTAAAGTATTTTAGCTAT
TCGGACCTGATATTCCTAAATATCCCTAGGGATAACTTACCTCCATTTTG
GCTGGTCATCACTCTTATACTAAACACCTACGTATTTGCAGCCCCTGTAT
CTTCGGTGCTTATGCAATTATCTGTACTTAAAAATAATGGCACTTTGCAT
AAGTTTTACAGTGATACCTACGATCTGGGCTTGTGGGAGAATTTCAAGCT
GATTTTGGGCGGAAAAGGCTTTTGGACTTTCCTCTCACCCACCGTTAAGA
GTCCTCTGCCCCATGATGGTGCCCAGTGGAAGATCAAACGTGTTCAGCAT
CATTCACCAAAATTACAGTTTCTCCGTGTATCCGATTGAAAGCTTTCTAG
ACCAT
BS04435.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:48:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17197-RB | 873 | CG17197-PB | 1..873 | 17..889 | 4365 | 100 | Plus |
CG17196-RC | 762 | CG17196-PC | 190..381 | 281..472 | 465 | 82.8 | Plus |
CG17196-RB | 756 | CG17196-PB | 184..375 | 281..472 | 465 | 82.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:48:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17197-RB | 1958 | CG17197-RB | 89..961 | 17..889 | 4365 | 100 | Plus |
CG17198-RB | 1958 | CG17198-RB | 89..961 | 17..889 | 4365 | 100 | Plus |
CG17196-RC | 881 | CG17196-RC | 221..412 | 281..472 | 465 | 82.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:48:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25774458..25775281 | 840..17 | 4120 | 100 | Minus |
3R | 32079331 | 3R | 25775757..25775948 | 472..281 | 465 | 82.8 | Minus |
3R | 32079331 | 3R | 25774331..25774380 | 889..840 | 250 | 100 | Minus |
3R | 32079331 | 3R | 25776727..25776842 | 477..362 | 220 | 79.3 | Minus |
3R | 32079331 | 3R | 25777733..25777835 | 459..357 | 215 | 80.6 | Minus |
3L | 28110227 | 3L | 16861157..16861246 | 365..454 | 210 | 82.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 12:48:22 has no hits.
BS04435.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:32:20 Download gff for
BS04435.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17197-RB | 1..873 | 17..889 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:58:13 Download gff for
BS04435.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17197-RB | 89..972 | 17..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:46:09 Download gff for
BS04435.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17197-RB | 89..960 | 17..888 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:32:20 Download gff for
BS04435.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17197-RB | 89..972 | 17..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:05:03 Download gff for
BS04435.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17198-RB | 89..960 | 17..888 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:05:03 Download gff for
BS04435.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25774332..25774379 | 841..888 | 100 | <- | Minus |
3R | 25774458..25775281 | 17..840 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:46:09 Download gff for
BS04435.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21600054..21600101 | 841..888 | 100 | <- | Minus |
arm_3R | 21600180..21601003 | 17..840 | 100 | | Minus |
BS04435.pep Sequence
Translation from 16 to 888
> BS04435.pep
MCLIWACTKYLARRNPKIFVRISHPTAVLFVIVTTIFFVVLQMFYVVPQL
FDVQGFMYKLGWLVAIFITYNIFGNMLACHITSTSVESLPKDRQIPEPEE
EHQWHYCDVCEKLMPPRSWHCILCKCCILKRDRHCIFTASCVGHNNQRYF
FWFTLFMALGTGVALATHIIATLKYFSYSDLIFLNIPRDNLPPFWLVITL
ILNTYVFAAPVSSVLMQLSVLKNNGTLHKFYSDTYDLGLWENFKLILGGK
GFWTFLSPTVKSPLPHDGAQWKIKRVQHHSPKLQFLRVSD*
BS04435.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:37:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17197-PB | 290 | CG17197-PB | 1..290 | 1..290 | 1588 | 100 | Plus |
CG17196-PA | 276 | CG17196-PA | 1..274 | 1..275 | 744 | 48.9 | Plus |
CG13029-PC | 288 | CG13029-PC | 1..283 | 1..275 | 740 | 46.6 | Plus |
CG17195-PA | 283 | CG17195-PA | 1..281 | 1..275 | 722 | 46.6 | Plus |
CG17196-PC | 253 | CG17196-PC | 20..251 | 43..275 | 658 | 50.4 | Plus |