Clone Sequence Records
BS04439.3prime Sequence
867 bp (866 high quality bases) assembled on 2005-12-01
> BS04439.3prime
ATGGTCTAGAAAGCTTCTAATGTGTAGTCTCAATTATGATTTCGTGCGTA
TCCAGATCGGGCACGGCAAACTTCATGGGCAAATAGTCGTCTGGATGCAT
GTGGGACATCTGGTTAACCTCCAGCTGGGCCCTTTCGTGGTCCTCATGGC
ACTTGGCTTCGTGCTTCTCATAGTCAGCGAAGGTATCAAAGATGGCCCGA
CACACCATGCATTCGAAAAAGCTTGGTTTCTGCTCCGACTCAAGCCGTTC
CCTGGCCAGGGCGGCAGCCGCCTGGATAGAGGCGGGCACGTCCACATCGA
CGCCCTCCTTTATGTGCGACTGCAAGTGGCGCTTAAAGTTTGACAGCTGG
GTGAAGCCCTTCTCGCAGTAATTACACTGGTAGGGCTTGGCGTTGAGGTG
GCCAAGCTTGTGTTTCTTGAGGTTGACCAGCTGGGAAAAGTACCTGCCGC
ATCGCTGGCAGCGGAACGGCTTCTCGCCAGTGTGTGTCATCTTGTGGCGC
TTCATGTTGCTCTGCTGGGTGAAGGACTTGTTGCAGAAGTTACAGGTGAA
TGGCCGCTCCCCGCTGTGCACCGCATAGTGGCGCTGCAGGTTCACAGCCT
GGGCGAAGGCCTTCGAGCAAATGTTACACACGAAGGGCCGCACATCGTTG
TGCACCTTCATGTGACGATCCAGGTTCCCCGAATTGCAGAAGCTCTTCGC
GCACAGCTTGCACTCGTAGGTGGTCTTGTTGTGGTTGTGCACCTCTTGTC
GATGCAACGTCTGATCCCGCTTGCTTCTGAAGGTTCGGTCGCAGCGCTTG
CAGCTGAACTGATTGGCCACCGTCTCGTCGAATTCTACCTCCATGCCCGC
CATGTCGACTGATAACT
BS04439.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17385-PA | 837 | CG17385-RA | 1..837 | 853..17 | 4110 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:00:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17385-RB | 1853 | CG17385-RB | 158..1000 | 857..15 | 4155 | 99.5 | Minus |
CG17385-RA | 1192 | CG17385-RA | 158..1000 | 857..15 | 4155 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:00:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14410725..14411284 | 225..784 | 2755 | 99.5 | Plus |
2R | 25286936 | 2R | 14410209..14410418 | 15..224 | 1050 | 100 | Plus |
2R | 25286936 | 2R | 14411343..14411415 | 785..857 | 350 | 98.6 | Plus |
Blast to na_te.dros performed on 2015-01-30 16:00:19 has no hits.
BS04439.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:48:22 Download gff for
BS04439.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17385-PA | 1..837 | 17..853 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:09:49 Download gff for
BS04439.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17385-PA | 1..837 | 17..853 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:19:37 Download gff for
BS04439.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17385-RA | 158..1000 | 15..857 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:47:11 Download gff for
BS04439.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17385-RA | 158..1000 | 15..857 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:47:11 Download gff for
BS04439.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14411343..14411415 | 785..857 | 98 | | Plus |
2R | 14410209..14410418 | 15..224 | 100 | <- | Plus |
2R | 14410725..14411284 | 225..784 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:19:37 Download gff for
BS04439.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10297714..10297923 | 15..224 | 100 | <- | Plus |
arm_2R | 10298230..10298789 | 225..784 | 99 | <- | Plus |
arm_2R | 10298848..10298920 | 785..857 | 98 | | Plus |
BS04439.5prime Sequence
849 bp (749 high quality bases) assembled on 2005-12-01
> BS04439.5prime
GAAGTTATCAGTCGACATGGCGGGCATGGAGGTAGAATTCGACGAGACGG
TGGCCAATCAGTTCAGCTGCAAGCGCTGCGACCGAACCTTCAGAAGCAAG
CGGGATCAGACGTTGCATCGACAAGAGGTGCACAACCACAACAAGACCAC
CTACGAGTGCAAGCTGTGCGCGAAGAGCTTCTGCAATTCGGGGAACCTGG
ATCGTCACATGAAGGTGCACAACGATGTGCGGCCCTTCGTGTGTAACATT
TGCTCGAAGGCCTTCGCCCAGGCTGTGAACCTGCAGCGCCACTATGCGGT
GCACAGCGGGGAGCGGCCATTCACCTGTAACTTCTGCAACAAGTCCTTCA
CCCAGCAGAGCAACATGAAGCGCCACAAGATGACACACACTGGCGAGAAG
CCGTTCCGCTGCCAGCGATGCGGCAGGTACTTTTCCCAGCTGGTCAACCT
CAAGAAACACAAGCTTGGCCACCTCAACGCCAAGCCCTACCAGTGTAATT
ACTGCGAGAAGGGCTTCACCCAGCTGTCAAACTTTAAGCGCCACTTGCAG
TCGCACATAAAGGAGGGCGTCGATGTGGACGTGCCCGCCTCTATCCAGGC
GGCTGCCGCCCTGGCCAGGGAACGGCTTGAGTCGGAGCAGAAACCAAGCT
TTTTCGAATGCATGGTGTGTCGGGCCATCTTTGATACCTTCGCTGACTAT
GAGAAGCACGAAGCCAAGTGCCATGAGGACCACGAAAGGGCCCAGCTGGA
GGTTAACCAGATGTCCCACATGCATCCAGACGACTATTTGCCCATGAAGT
TTGCCGTGCCCGATCTGGATACGCACGAAATCATAATTGAGACTACACA
BS04439.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17385-PA | 837 | CG17385-RA | 1..833 | 17..849 | 4090 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 01:52:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17385-RB | 1853 | CG17385-RB | 158..994 | 13..849 | 4125 | 99.5 | Plus |
CG17385-RA | 1192 | CG17385-RA | 158..994 | 13..849 | 4125 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 01:52:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14410725..14411284 | 645..86 | 2755 | 99.5 | Minus |
2R | 25286936 | 2R | 14410215..14410418 | 849..646 | 1020 | 100 | Minus |
2R | 25286936 | 2R | 14411343..14411415 | 85..13 | 350 | 98.6 | Minus |
Blast to na_te.dros performed on 2015-02-10 01:52:44 has no hits.
BS04439.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:48:23 Download gff for
BS04439.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17385-PA | 1..832 | 17..848 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:09:50 Download gff for
BS04439.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17385-PA | 1..832 | 17..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:38:39 Download gff for
BS04439.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17385-RA | 158..993 | 13..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:03:52 Download gff for
BS04439.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17385-RA | 158..993 | 13..848 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:03:52 Download gff for
BS04439.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14411343..14411415 | 13..85 | 98 | | Minus |
2R | 14410216..14410418 | 646..848 | 100 | <- | Minus |
2R | 14410725..14411284 | 86..645 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:38:39 Download gff for
BS04439.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10297721..10297923 | 646..848 | 100 | <- | Minus |
arm_2R | 10298230..10298789 | 86..645 | 99 | <- | Minus |
arm_2R | 10298848..10298920 | 13..85 | 98 | | Minus |
BS04439.complete Sequence
869 bp (869 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ634938
> BS04439.complete
GAAGTTATCAGTCGACATGGCGGGCATGGAGGTAGAATTCGACGAGACGG
TGGCCAATCAGTTCAGCTGCAAGCGCTGCGACCGAACCTTCAGAAGCAAG
CGGGATCAGACGTTGCATCGACAAGAGGTGCACAACCACAACAAGACCAC
CTACGAGTGCAAGCTGTGCGCGAAGAGCTTCTGCAATTCGGGGAACCTGG
ATCGTCACATGAAGGTGCACAACGATGTGCGGCCCTTCGTGTGTAACATT
TGCTCGAAGGCCTTCGCCCAGGCTGTGAACCTGCAGCGCCACTATGCGGT
GCACAGCGGGGAGCGGCCATTCACCTGTAACTTCTGCAACAAGTCCTTCA
CCCAGCAGAGCAACATGAAGCGCCACAAGATGACACACACTGGCGAGAAG
CCGTTCCGCTGCCAGCGATGCGGCAGGTACTTTTCCCAGCTGGTCAACCT
CAAGAAACACAAGCTTGGCCACCTCAACGCCAAGCCCTACCAGTGTAATT
ACTGCGAGAAGGGCTTCACCCAGCTGTCAAACTTTAAGCGCCACTTGCAG
TCGCACATAAAGGAGGGCGTCGATGTGGACGTGCCCGCCTCTATCCAGGC
GGCTGCCGCCCTGGCCAGGGAACGGCTTGAGTCGGAGCAGAAACCAAGCT
TTTTCGAATGCATGGTGTGTCGGGCCATCTTTGATACCTTCGCTGACTAT
GAGAAGCACGAAGCCAAGTGCCATGAGGACCACGAAAGGGCCCAGCTGGA
GGTTAACCAGATGTCCCACATGCATCCAGACGACTATTTGCCCATGAAGT
TTGCCGTGCCCGATCTGGATACGCACGAAATCATAATTGAGACTACACAT
TAGAAGCTTTCTAGACCAT
BS04439.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:55:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17385-RB | 837 | CG17385-PB | 1..837 | 17..853 | 4140 | 99.6 | Plus |
CG17385-RA | 837 | CG17385-PA | 1..837 | 17..853 | 4140 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:55:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17385-RB | 1853 | CG17385-RB | 158..1000 | 13..855 | 4155 | 99.5 | Plus |
CG17385-RA | 1192 | CG17385-RA | 158..1000 | 13..855 | 4155 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:55:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14410725..14411284 | 645..86 | 2755 | 99.5 | Minus |
2R | 25286936 | 2R | 14410209..14410418 | 855..646 | 1050 | 100 | Minus |
2R | 25286936 | 2R | 14411343..14411415 | 85..13 | 350 | 98.6 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:55:47 has no hits.
BS04439.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:43:33 Download gff for
BS04439.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17385-RA | 1..837 | 17..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:30:32 Download gff for
BS04439.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17385-RA | 1..837 | 17..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:41:08 Download gff for
BS04439.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17385-RA | 162..998 | 17..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:43:33 Download gff for
BS04439.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17385-RA | 1..837 | 17..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:46:08 Download gff for
BS04439.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17385-RA | 162..998 | 17..853 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:46:08 Download gff for
BS04439.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14410211..14410418 | 646..853 | 100 | <- | Minus |
2R | 14410725..14411284 | 86..645 | 99 | <- | Minus |
2R | 14411343..14411411 | 17..85 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:41:08 Download gff for
BS04439.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10297716..10297923 | 646..853 | 100 | <- | Minus |
arm_2R | 10298230..10298789 | 86..645 | 99 | <- | Minus |
arm_2R | 10298848..10298916 | 17..85 | 100 | | Minus |
BS04439.pep Sequence
Translation from 16 to 852
> BS04439.pep
MAGMEVEFDETVANQFSCKRCDRTFRSKRDQTLHRQEVHNHNKTTYECKL
CAKSFCNSGNLDRHMKVHNDVRPFVCNICSKAFAQAVNLQRHYAVHSGER
PFTCNFCNKSFTQQSNMKRHKMTHTGEKPFRCQRCGRYFSQLVNLKKHKL
GHLNAKPYQCNYCEKGFTQLSNFKRHLQSHIKEGVDVDVPASIQAAAALA
RERLESEQKPSFFECMVCRAIFDTFADYEKHEAKCHEDHERAQLEVNQMS
HMHPDDYLPMKFAVPDLDTHEIIIETTH*
BS04439.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:32:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17385-PB | 278 | CG17385-PB | 1..278 | 1..278 | 1531 | 100 | Plus |
CG17385-PA | 278 | CG17385-PA | 1..278 | 1..278 | 1531 | 100 | Plus |
sens-2-PB | 746 | CG31632-PB | 507..691 | 16..200 | 381 | 38.7 | Plus |
sens-2-PA | 746 | CG31632-PA | 507..691 | 16..200 | 381 | 38.7 | Plus |
Meics-PB | 571 | CG8474-PB | 318..536 | 18..270 | 370 | 31.1 | Plus |
sens-2-PB | 746 | CG31632-PB | 507..673 | 46..238 | 294 | 30.4 | Plus |
sens-2-PA | 746 | CG31632-PA | 507..673 | 46..238 | 294 | 30.4 | Plus |
sens-2-PB | 746 | CG31632-PB | 560..672 | 12..125 | 223 | 35.7 | Plus |
sens-2-PA | 746 | CG31632-PA | 560..672 | 12..125 | 223 | 35.7 | Plus |