Clone BS04439 Report

Search the DGRC for BS04439

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:44
Well:39
Vector:pDNR-Dual
Associated Gene/TranscriptCG17385-RA
Protein status:BS04439.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04439.3prime Sequence

867 bp (866 high quality bases) assembled on 2005-12-01

> BS04439.3prime
ATGGTCTAGAAAGCTTCTAATGTGTAGTCTCAATTATGATTTCGTGCGTA
TCCAGATCGGGCACGGCAAACTTCATGGGCAAATAGTCGTCTGGATGCAT
GTGGGACATCTGGTTAACCTCCAGCTGGGCCCTTTCGTGGTCCTCATGGC
ACTTGGCTTCGTGCTTCTCATAGTCAGCGAAGGTATCAAAGATGGCCCGA
CACACCATGCATTCGAAAAAGCTTGGTTTCTGCTCCGACTCAAGCCGTTC
CCTGGCCAGGGCGGCAGCCGCCTGGATAGAGGCGGGCACGTCCACATCGA
CGCCCTCCTTTATGTGCGACTGCAAGTGGCGCTTAAAGTTTGACAGCTGG
GTGAAGCCCTTCTCGCAGTAATTACACTGGTAGGGCTTGGCGTTGAGGTG
GCCAAGCTTGTGTTTCTTGAGGTTGACCAGCTGGGAAAAGTACCTGCCGC
ATCGCTGGCAGCGGAACGGCTTCTCGCCAGTGTGTGTCATCTTGTGGCGC
TTCATGTTGCTCTGCTGGGTGAAGGACTTGTTGCAGAAGTTACAGGTGAA
TGGCCGCTCCCCGCTGTGCACCGCATAGTGGCGCTGCAGGTTCACAGCCT
GGGCGAAGGCCTTCGAGCAAATGTTACACACGAAGGGCCGCACATCGTTG
TGCACCTTCATGTGACGATCCAGGTTCCCCGAATTGCAGAAGCTCTTCGC
GCACAGCTTGCACTCGTAGGTGGTCTTGTTGTGGTTGTGCACCTCTTGTC
GATGCAACGTCTGATCCCGCTTGCTTCTGAAGGTTCGGTCGCAGCGCTTG
CAGCTGAACTGATTGGCCACCGTCTCGTCGAATTCTACCTCCATGCCCGC
CATGTCGACTGATAACT

BS04439.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG17385-PA 837 CG17385-RA 1..837 853..17 4110 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:00:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG17385-RB 1853 CG17385-RB 158..1000 857..15 4155 99.5 Minus
CG17385-RA 1192 CG17385-RA 158..1000 857..15 4155 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:00:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14410725..14411284 225..784 2755 99.5 Plus
2R 25286936 2R 14410209..14410418 15..224 1050 100 Plus
2R 25286936 2R 14411343..14411415 785..857 350 98.6 Plus
Blast to na_te.dros performed on 2015-01-30 16:00:19 has no hits.

BS04439.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:48:22 Download gff for BS04439.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17385-PA 1..837 17..853 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:09:49 Download gff for BS04439.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17385-PA 1..837 17..853 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:19:37 Download gff for BS04439.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17385-RA 158..1000 15..857 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:47:11 Download gff for BS04439.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17385-RA 158..1000 15..857 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:47:11 Download gff for BS04439.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 14411343..14411415 785..857 98   Plus
2R 14410209..14410418 15..224 100 <- Plus
2R 14410725..14411284 225..784 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:19:37 Download gff for BS04439.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10297714..10297923 15..224 100 <- Plus
arm_2R 10298230..10298789 225..784 99 <- Plus
arm_2R 10298848..10298920 785..857 98   Plus

BS04439.5prime Sequence

849 bp (749 high quality bases) assembled on 2005-12-01

> BS04439.5prime
GAAGTTATCAGTCGACATGGCGGGCATGGAGGTAGAATTCGACGAGACGG
TGGCCAATCAGTTCAGCTGCAAGCGCTGCGACCGAACCTTCAGAAGCAAG
CGGGATCAGACGTTGCATCGACAAGAGGTGCACAACCACAACAAGACCAC
CTACGAGTGCAAGCTGTGCGCGAAGAGCTTCTGCAATTCGGGGAACCTGG
ATCGTCACATGAAGGTGCACAACGATGTGCGGCCCTTCGTGTGTAACATT
TGCTCGAAGGCCTTCGCCCAGGCTGTGAACCTGCAGCGCCACTATGCGGT
GCACAGCGGGGAGCGGCCATTCACCTGTAACTTCTGCAACAAGTCCTTCA
CCCAGCAGAGCAACATGAAGCGCCACAAGATGACACACACTGGCGAGAAG
CCGTTCCGCTGCCAGCGATGCGGCAGGTACTTTTCCCAGCTGGTCAACCT
CAAGAAACACAAGCTTGGCCACCTCAACGCCAAGCCCTACCAGTGTAATT
ACTGCGAGAAGGGCTTCACCCAGCTGTCAAACTTTAAGCGCCACTTGCAG
TCGCACATAAAGGAGGGCGTCGATGTGGACGTGCCCGCCTCTATCCAGGC
GGCTGCCGCCCTGGCCAGGGAACGGCTTGAGTCGGAGCAGAAACCAAGCT
TTTTCGAATGCATGGTGTGTCGGGCCATCTTTGATACCTTCGCTGACTAT
GAGAAGCACGAAGCCAAGTGCCATGAGGACCACGAAAGGGCCCAGCTGGA
GGTTAACCAGATGTCCCACATGCATCCAGACGACTATTTGCCCATGAAGT
TTGCCGTGCCCGATCTGGATACGCACGAAATCATAATTGAGACTACACA

BS04439.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG17385-PA 837 CG17385-RA 1..833 17..849 4090 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 01:52:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG17385-RB 1853 CG17385-RB 158..994 13..849 4125 99.5 Plus
CG17385-RA 1192 CG17385-RA 158..994 13..849 4125 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 01:52:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14410725..14411284 645..86 2755 99.5 Minus
2R 25286936 2R 14410215..14410418 849..646 1020 100 Minus
2R 25286936 2R 14411343..14411415 85..13 350 98.6 Minus
Blast to na_te.dros performed on 2015-02-10 01:52:44 has no hits.

BS04439.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:48:23 Download gff for BS04439.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17385-PA 1..832 17..848 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:09:50 Download gff for BS04439.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17385-PA 1..832 17..848 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:38:39 Download gff for BS04439.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17385-RA 158..993 13..848 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:03:52 Download gff for BS04439.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17385-RA 158..993 13..848 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:03:52 Download gff for BS04439.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 14411343..14411415 13..85 98   Minus
2R 14410216..14410418 646..848 100 <- Minus
2R 14410725..14411284 86..645 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:38:39 Download gff for BS04439.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10297721..10297923 646..848 100 <- Minus
arm_2R 10298230..10298789 86..645 99 <- Minus
arm_2R 10298848..10298920 13..85 98   Minus

BS04439.complete Sequence

869 bp (869 high quality bases) assembled on 2005-09-13

GenBank Submission: FJ634938

> BS04439.complete
GAAGTTATCAGTCGACATGGCGGGCATGGAGGTAGAATTCGACGAGACGG
TGGCCAATCAGTTCAGCTGCAAGCGCTGCGACCGAACCTTCAGAAGCAAG
CGGGATCAGACGTTGCATCGACAAGAGGTGCACAACCACAACAAGACCAC
CTACGAGTGCAAGCTGTGCGCGAAGAGCTTCTGCAATTCGGGGAACCTGG
ATCGTCACATGAAGGTGCACAACGATGTGCGGCCCTTCGTGTGTAACATT
TGCTCGAAGGCCTTCGCCCAGGCTGTGAACCTGCAGCGCCACTATGCGGT
GCACAGCGGGGAGCGGCCATTCACCTGTAACTTCTGCAACAAGTCCTTCA
CCCAGCAGAGCAACATGAAGCGCCACAAGATGACACACACTGGCGAGAAG
CCGTTCCGCTGCCAGCGATGCGGCAGGTACTTTTCCCAGCTGGTCAACCT
CAAGAAACACAAGCTTGGCCACCTCAACGCCAAGCCCTACCAGTGTAATT
ACTGCGAGAAGGGCTTCACCCAGCTGTCAAACTTTAAGCGCCACTTGCAG
TCGCACATAAAGGAGGGCGTCGATGTGGACGTGCCCGCCTCTATCCAGGC
GGCTGCCGCCCTGGCCAGGGAACGGCTTGAGTCGGAGCAGAAACCAAGCT
TTTTCGAATGCATGGTGTGTCGGGCCATCTTTGATACCTTCGCTGACTAT
GAGAAGCACGAAGCCAAGTGCCATGAGGACCACGAAAGGGCCCAGCTGGA
GGTTAACCAGATGTCCCACATGCATCCAGACGACTATTTGCCCATGAAGT
TTGCCGTGCCCGATCTGGATACGCACGAAATCATAATTGAGACTACACAT
TAGAAGCTTTCTAGACCAT

BS04439.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:55:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG17385-RB 837 CG17385-PB 1..837 17..853 4140 99.6 Plus
CG17385-RA 837 CG17385-PA 1..837 17..853 4140 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:55:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG17385-RB 1853 CG17385-RB 158..1000 13..855 4155 99.5 Plus
CG17385-RA 1192 CG17385-RA 158..1000 13..855 4155 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:55:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14410725..14411284 645..86 2755 99.5 Minus
2R 25286936 2R 14410209..14410418 855..646 1050 100 Minus
2R 25286936 2R 14411343..14411415 85..13 350 98.6 Minus
Blast to na_te.dros performed on 2014-11-26 21:55:47 has no hits.

BS04439.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:43:33 Download gff for BS04439.complete
Subject Subject Range Query Range Percent Splice Strand
CG17385-RA 1..837 17..853 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:30:32 Download gff for BS04439.complete
Subject Subject Range Query Range Percent Splice Strand
CG17385-RA 1..837 17..853 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:41:08 Download gff for BS04439.complete
Subject Subject Range Query Range Percent Splice Strand
CG17385-RA 162..998 17..853 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:43:33 Download gff for BS04439.complete
Subject Subject Range Query Range Percent Splice Strand
CG17385-RA 1..837 17..853 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:46:08 Download gff for BS04439.complete
Subject Subject Range Query Range Percent Splice Strand
CG17385-RA 162..998 17..853 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:46:08 Download gff for BS04439.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14410211..14410418 646..853 100 <- Minus
2R 14410725..14411284 86..645 99 <- Minus
2R 14411343..14411411 17..85 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:41:08 Download gff for BS04439.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10297716..10297923 646..853 100 <- Minus
arm_2R 10298230..10298789 86..645 99 <- Minus
arm_2R 10298848..10298916 17..85 100   Minus

BS04439.pep Sequence

Translation from 16 to 852

> BS04439.pep
MAGMEVEFDETVANQFSCKRCDRTFRSKRDQTLHRQEVHNHNKTTYECKL
CAKSFCNSGNLDRHMKVHNDVRPFVCNICSKAFAQAVNLQRHYAVHSGER
PFTCNFCNKSFTQQSNMKRHKMTHTGEKPFRCQRCGRYFSQLVNLKKHKL
GHLNAKPYQCNYCEKGFTQLSNFKRHLQSHIKEGVDVDVPASIQAAAALA
RERLESEQKPSFFECMVCRAIFDTFADYEKHEAKCHEDHERAQLEVNQMS
HMHPDDYLPMKFAVPDLDTHEIIIETTH*

BS04439.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:32:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG17385-PB 278 CG17385-PB 1..278 1..278 1531 100 Plus
CG17385-PA 278 CG17385-PA 1..278 1..278 1531 100 Plus
sens-2-PB 746 CG31632-PB 507..691 16..200 381 38.7 Plus
sens-2-PA 746 CG31632-PA 507..691 16..200 381 38.7 Plus
Meics-PB 571 CG8474-PB 318..536 18..270 370 31.1 Plus
sens-2-PB 746 CG31632-PB 507..673 46..238 294 30.4 Plus
sens-2-PA 746 CG31632-PA 507..673 46..238 294 30.4 Plus
sens-2-PB 746 CG31632-PB 560..672 12..125 223 35.7 Plus
sens-2-PA 746 CG31632-PA 560..672 12..125 223 35.7 Plus