Clone BS04440 Report

Search the DGRC for BS04440

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:44
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptCG17568-RA
Protein status:BS04440.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04440.3prime Sequence

955 bp (786 high quality bases) assembled on 2005-12-01

> BS04440.3prime
ATGGTCTAGAAAGCTTCTAGTTTTCTGTTGTTCCTTTTGGTAACTTTTGA
GTCATAACGCGAAGTTCATCCAACGTTGGAACATTGAGGCGAGAGGGCAA
CCGTGCTCCATCCTCCTGCTGAACTTCCTGCGGATGTTTCTTGAGCTTGT
GCGACCGGCAATTGGCATTACAGGCAAAGGACTTGCCACAGTAGTTGCAA
ACGTACGGTCGCAGCCCCGTGTGGCTCAGCAAGTGGGTCTTGAGAGTCTT
TGAGCGCTTGAAGAGAGCGCCGCAGACATCACACTTCAGGCGCCGCTCCT
CGGTGTGCACGACCTTGTGCATGTTCCAGGTGCGACGCGTTTGCAGCTTC
TTGCCGCAAATGTTGCACACGAAACTGGGCTCCGCATGGATTTGGTAGTG
GGCCTTCAGCCGAGCCCGATTCTTAAAGCCCGCCTTGCAGACGGTGCACT
CGAAGGGACGGCTTTCCGTGTGAACCAGCTTGTGTTCATTTAGTGCTGTT
ATTGTCTTCAGTTGCTTGCCGCAACTATCGCAGATATATGGCTTGACATT
CTGGTGTATGCCCTCTTTGTGGAGCTTCAGCGCTGTGGCGGAGGATAGCG
TTTTGTTGCAAATATCACAGGTTGTTGTTGTTTTGTCCACTTTCACACGC
CGCTCGATCCGGCGGCACTCGCGTTCCAAGTGTTTCTCGTATGAAGCGCG
GTTTCTGTAGACCTTGCCACATTTCTCGCAGTCCATTCGACCCCGTTTGG
CCTTCTCCTCGGCAGTTGATTCCAGAGTATTTGGCGTGGTTGCCACAGCG
ACGAGATCCATTAGCTGGCCATCTACGGGCAGGAAATCGTCGTCTCCTTC
ACAGCTGTCAAGCATTTCTGATTTGACATCATTTCTCATTGAGGCCGGAG
AGGTTGTGCTGTCGAGGCGCGGTTGCGATAGTTCCTCCTGAGGCAGTTCG
TCTAG

BS04440.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG17568-PA 1542 CG17568-RA 676..1542 883..17 4335 100 Minus
CG17568-PA 1542 CG17568-RA 604..672 955..887 345 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:54:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG17568-RA 1839 CG17568-RA 703..1641 955..17 4650 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:54:14
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19180041..19180943 53..955 4470 99.7 Plus
2L 23513712 2L 19179947..19179983 17..53 185 100 Plus
Blast to na_te.dros performed on 2015-02-11 23:54:18 has no hits.

BS04440.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:48:24 Download gff for BS04440.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17568-PA 604..1542 17..955 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:09:52 Download gff for BS04440.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17568-PA 604..1542 17..955 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:58:01 Download gff for BS04440.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17568-RA 703..1644 10..955 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:59:09 Download gff for BS04440.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17568-RA 703..1644 10..955 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:59:09 Download gff for BS04440.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 19180042..19180943 54..955 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:58:01 Download gff for BS04440.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19180042..19180943 54..955 99   Plus

BS04440.5prime Sequence

884 bp (726 high quality bases) assembled on 2005-11-29

> BS04440.5prime
GAAGTTATCAGTCGACATGACGGACGGCAGCCACTGGTTGAACTGGTGTC
GCCTGTGCGCCAAGGACGACGCCCACGGCAATGTGAAGGTGCAAATGAAT
GAGAATTCTCAGGGAAACTGGGACAATGTCCTGATAATGGCCATTCGCAA
GTACTTCGAAGTGCAAATGCAACTGGAGGACGAGCTAAGCAGCGTGCTGT
GTACGGAGTGCTATACGCTTATTAGCGAACTAATCGATTTTGCAGAGCAT
GTGACCAAAGTGCAAGACATCTTTGAGGTCCTGCGGCGAACAGAAACAGA
TGGGGACCAGGAAATGGACGTGGCTGCACTGCGTCAGCAGTTTGGACTGT
GCGATGACGACTGGACGCACATTATAAAGCCAATTCCTGCTCTTGAAATG
GAGTCCGATAATGTTTATCAAAAACCCGCCGAACTATTAAAGGACTTTCC
TTTGGCGGAGACAAGCAGCCAAGAAATGGAAATATCGAAAAGGACAACAA
CAACCCACTTAATTCAAACCAAAAAGAACGTAGAAATGGAGATACCCAAG
CAAGAATTCATCGACTTAGGTCCCATTCTGTTGGAAAAGAACACAAGTCA
ACTGGACATGGAGGATGTGCTAGACGAACTGCCTCAGGAGGAACTATCGC
AACCGCGCCTCGACAGCACAACCTCTCCGGCCTCAATGGAGAATGATGTC
AAATCAGAAATGCTTGACAGCTGTGAAGGAGACGACGATTTCCTGCCCGT
AGATGGCCAGCTAATGGATCTCGTCGCTGTGGCAACCACGCCAAATACTC
TGGAATCAACTGCCGAGGAGAAGGCCAAACGGGGTCGAATGGACTGCGAG
AAATGTGGCAAGGTCTACAGAAACCCGCGCTTCA

BS04440.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG17568-PA 1542 CG17568-RA 1..859 17..875 4295 100 Plus
CG10366-PA 1737 CG10366-RA 82..109 44..71 140 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:50:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG17568-RA 1839 CG17568-RA 100..966 17..884 4315 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:50:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19180688..19181396 875..167 3545 100 Minus
2L 23513712 2L 19181454..19181603 166..17 750 100 Minus
Blast to na_te.dros performed on 2015-02-13 02:50:49 has no hits.

BS04440.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:48:25 Download gff for BS04440.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17568-PA 1..866 17..883 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:09:53 Download gff for BS04440.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17568-PA 1..866 17..883 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:54:59 Download gff for BS04440.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17568-RA 100..965 17..883 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:11:42 Download gff for BS04440.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17568-RA 100..965 17..883 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:11:42 Download gff for BS04440.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 19181454..19181603 17..166 100   Minus
2L 19180681..19181396 167..883 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:54:59 Download gff for BS04440.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19180681..19181396 167..883 99 <- Minus
arm_2L 19181454..19181603 17..166 100   Minus

BS04440.complete Sequence

1574 bp (1574 high quality bases) assembled on 2005-09-13

GenBank Submission: FJ634939

> BS04440.complete
GAAGTTATCAGTCGACATGACGGACGGCAGCCACTGGTTGAACTGGTGTC
GCCTGTGCGCCAAGGACGACGCCCACGGCAATGTGAAGGTGCAAATGAAT
GAGAATTCTCAGGGAAACTGGGACAATGTCCTGATAATGGCCATTCGCAA
GTACTTCGAAGTGCAAATGCAACTGGAGGACGAGCTAAGCAGCGTGCTGT
GTACGGAGTGCTATACGCTTATTAGCGAACTAATCGATTTTGCAGAGCAT
GTGACCAAAGTGCAAGACATCTTTGAGGTCCTGCGGCGAACAGAAACAGA
TGGGGACCAGGAAATGGACGTGGCTGCACTGCGTCAGCAGTTTGGACTGT
GCGATGACGACTGGACGCACATTATAAAGCCAATTCCTGCTCTTGAAATG
GAGTCCGATAATGTTTATCAAAAACCCGCCGAACTATTAAAGGACTTTCC
TTTGGCGGAGACAAGCAGCCAAGAAATGGAAATATCGAAAAGGACAACAA
CAACCCACTTAATTCAAACCAAAAAGAACGTAGAAATGGAGATACCCAAG
CAAGAATTCATCGACTTAGGTCCCATTCTGTTGGAAAAGAACACAAGTCA
ACTGGACATGGAGGATGTGCTAGACGAACTGCCTCAGGAGGAACTATCGC
AACCGCGCCTCGACAGCACAACCTCTCCGGCCTCAATGGAGAATGATGTC
AAATCAGAAATGCTTGACAGCTGTGAAGGAGACGACGATTTCCTGCCCGT
AGATGGCCAGCTAATGGATCTCGTCGCTGTGGCAACCACGCCAAATACTC
TGGAATCAACTGCCGAGGAGAAGGCCAAACGGGGTCGAATGGACTGCGAG
AAATGTGGCAAGGTCTACAGAAACCGCGCTTCATACGAGAAACACTTGGA
ACGCGAGTGCCGCCGGATCGAGCGGCGTGTGAAAGTGGACAAAACAACAA
CAACCTGTGATATTTGCAACAAAACGCTATCCTCCGCCACAGCGCTGAAG
CTCCACAAAGAGGGCATACACCAGAATGTCAAGCCATATATCTGCGATAG
TTGCGGCAAGCAACTGAAGACAATAACAGCACTAAATGAACACAAGCTGG
TTCACACGGAAAGCCGTCCCTTCGAGTGCACCGTCTGCAAGGCGGGCTTT
AAGAATCGGGCTCGGCTGAAGGCCCACTACCAAATCCATGCGGAGCCCAG
TTTCGTGTGCAACATTTGCGGCAAGAAGCTGCAAACGCGTCGCACCTGGA
ACATGCACAAGGTCGTGCACACCGAGGAGCGGCGCCTGAAGTGTGATGTC
TGCGGCGCTCTCTTCAAGCGCTCAAAGACTCTCAAGACCCACTTGCTGAG
CCACACGGGGCTGCGACCGTACGTTTGCAACTACTGTGGCAAGTCCTTTG
CCTGTAATGCCAATTGCCGGTCGCACAAGCTCAAGAAACATCCGCAGGAA
GTTCAGCAGGAGGATGGAGCACGGTTGCCCTCTCGCCTCAATGTTCCAAC
GTTGGATGAACTTCGCGTTATGACTCAAAAGTTACCAAAAGGAACAACAG
AAAACTAGAAGCTTTCTAGACCAT

BS04440.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:29:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG17568-RA 1542 CG17568-PA 1..1542 17..1558 7710 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:29:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG17568-RA 1839 CG17568-RA 100..1641 17..1558 7710 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:29:14
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19180041..19181396 1522..167 6780 100 Minus
2L 23513712 2L 19181454..19181603 166..17 750 100 Minus
2L 23513712 2L 19179947..19179983 1558..1522 185 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:29:16 has no hits.

BS04440.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:32:21 Download gff for BS04440.complete
Subject Subject Range Query Range Percent Splice Strand
CG17568-RA 1..1542 17..1558 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:16:30 Download gff for BS04440.complete
Subject Subject Range Query Range Percent Splice Strand
CG17568-RA 100..1644 17..1565 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:18:42 Download gff for BS04440.complete
Subject Subject Range Query Range Percent Splice Strand
CG17568-RA 100..1641 17..1558 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:32:21 Download gff for BS04440.complete
Subject Subject Range Query Range Percent Splice Strand
CG17568-RA 100..1644 17..1565 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:23:08 Download gff for BS04440.complete
Subject Subject Range Query Range Percent Splice Strand
CG17568-RA 100..1641 17..1558 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:23:08 Download gff for BS04440.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19179947..19179983 1522..1558 100 <- Minus
2L 19180042..19181396 167..1521 100 <- Minus
2L 19181454..19181603 17..166 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:18:42 Download gff for BS04440.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19179947..19179983 1522..1558 100 <- Minus
arm_2L 19180042..19181396 167..1521 100 <- Minus
arm_2L 19181454..19181603 17..166 100   Minus

BS04440.pep Sequence

Translation from 16 to 1557

> BS04440.pep
MTDGSHWLNWCRLCAKDDAHGNVKVQMNENSQGNWDNVLIMAIRKYFEVQ
MQLEDELSSVLCTECYTLISELIDFAEHVTKVQDIFEVLRRTETDGDQEM
DVAALRQQFGLCDDDWTHIIKPIPALEMESDNVYQKPAELLKDFPLAETS
SQEMEISKRTTTTHLIQTKKNVEMEIPKQEFIDLGPILLEKNTSQLDMED
VLDELPQEELSQPRLDSTTSPASMENDVKSEMLDSCEGDDDFLPVDGQLM
DLVAVATTPNTLESTAEEKAKRGRMDCEKCGKVYRNRASYEKHLERECRR
IERRVKVDKTTTTCDICNKTLSSATALKLHKEGIHQNVKPYICDSCGKQL
KTITALNEHKLVHTESRPFECTVCKAGFKNRARLKAHYQIHAEPSFVCNI
CGKKLQTRRTWNMHKVVHTEERRLKCDVCGALFKRSKTLKTHLLSHTGLR
PYVCNYCGKSFACNANCRSHKLKKHPQEVQQEDGARLPSRLNVPTLDELR
VMTQKLPKGTTEN*

BS04440.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:47:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG17568-PA 513 CG17568-PA 1..513 1..513 2731 100 Plus
wek-PB 470 CG4148-PB 6..466 5..508 823 38.5 Plus
wek-PA 470 CG4148-PA 6..466 5..508 823 38.5 Plus
CG6254-PA 634 CG6254-PA 14..592 3..509 817 33.8 Plus
CG10366-PA 578 CG10366-PA 23..500 5..504 662 30.4 Plus