Clone Sequence Records
BS04443.3prime Sequence
937 bp (866 high quality bases) assembled on 2005-12-01
> BS04443.3prime
ATGGTCTAGAAAGCTTTCAAGACAGATGGTAGAGGTCCTGTGGATGTTGC
TGGTAGCTGCACTGATGTTGGTACTGCTGCGGGTAGGCATCGTACTGCTG
GTGGGTCTGCTGCTGAGGGTAATCATTGAGCAGGCCATAACCATGACTGT
GACTGTGGCTGTAAGCGGGGTAGGCGGCGGTGGTTTGGTGGTGGTGGTAC
ATGGGCACTGGCACCGATGGTGCCCCGGTGGTGGCGGTGCTTGTGGCCTC
CAGTGGCGGCAGCATCGCGGTGTAGCCGGCACCACAGTGCTCCGGGGAGC
TGTCCAGCGTGCGATCCTTCTTCGACTTCATGCGTCGGTTTTGGAACCAG
ATCTTGATCTGCCTTTCGCTCAGGCTCAGGGCATTGGCGATATCGATGCG
ACGACGCCGGGTGATGTATCTATTGAAGTGGAACTCCTTCTCGAGCTCCA
GGGTCTGGTAGCGGGTGTACGTCTGACGGGTGCGTTTCGAGTCTTTGCAA
TCTGATGCCAAAGTCTCCTCGATGTGCGACCAATTGAAATCGCCGGCTCC
ATTCGGGGCTGTCACAATTCGATGATTGATCTCCTGGCTGACAGCTGACG
AGGATTTCTCCCCCGGCGATTGGGGTGGCGTGCTGATGCCTTCGAGGGGC
GGCAGAGAGGTGGGCGTGGTTGGCGGAGGGGTGGCAAAGTCGCCATTCTT
CAGCTTCTGCGTCTGCGACTGGGGCGAGTAGACGTCCAAGTAGTCGACAT
CCTCGGAGGCGCTGGGCGTGGGCACAGTCACGTACTCTTGGTCGTAGCTG
GGAGCGGGGCTGGCGGTGACCTTGGTGCTTACGGCGGGAGCCTTCTTCAC
CTGCTCGACGGTTGTGTAGAAATAGTCGGGGGTGTACTTCAGCTTTCTCA
CGGGATTGGTGAGCAGAGCCCTCAGTGTGCTGGGTCG
BS04443.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2047-PA | 1233 | ftz-RA | 313..1233 | 937..17 | 4555 | 99.7 | Minus |
CG1030-PA | 1254 | Scr-RA | 991..1037 | 469..423 | 185 | 95.7 | Minus |
CG1030-PB | 1254 | Scr-RB | 991..1037 | 469..423 | 185 | 95.7 | Minus |
CG1030-PC | 1254 | Scr-RC | 991..1037 | 469..423 | 185 | 95.7 | Minus |
CG1030-PA | 1254 | Scr-RA | 1097..1145 | 363..315 | 170 | 93.8 | Minus |
CG1030-PB | 1254 | Scr-RB | 1097..1145 | 363..315 | 170 | 93.8 | Minus |
CG1030-PC | 1254 | Scr-RC | 1097..1145 | 363..315 | 170 | 93.8 | Minus |
CG2189-PA | 1761 | Dfd-RA | 1223..1271 | 363..315 | 145 | 91.8 | Minus |
CG10388-PB | 1041 | Ubx-RB | 769..816 | 475..428 | 140 | 91.6 | Minus |
CG10388-PF | 1068 | Ubx-RF | 796..843 | 475..428 | 140 | 91.6 | Minus |
CG10388-PD | 1092 | Ubx-RD | 820..867 | 475..428 | 140 | 91.6 | Minus |
CG10388-PC | 1119 | Ubx-RC | 847..894 | 475..428 | 140 | 91.6 | Minus |
CG10388-PE | 1143 | Ubx-RE | 871..918 | 475..428 | 140 | 91.6 | Minus |
CG10388-PA | 1170 | Ubx-RA | 898..945 | 475..428 | 140 | 91.6 | Minus |
CG13424-PA | 1236 | CG13424-RA | 483..509 | 362..336 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:23:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ftz-RA | 1774 | CG2047-RA | 383..1303 | 937..17 | 4575 | 99.8 | Minus |
Scr-RB | 3987 | CG1030-RB | 1462..1616 | 469..315 | 400 | 83.9 | Minus |
Scr-RA | 4140 | CG1030-RA | 1615..1769 | 469..315 | 400 | 83.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:23:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6865286..6865773 | 504..17 | 2440 | 100 | Minus |
3R | 32079331 | 3R | 6864706..6865141 | 937..502 | 2150 | 99.5 | Minus |
3R | 32079331 | 3R | 6825491..6825645 | 315..469 | 400 | 83.9 | Plus |
3R | 32079331 | 3R | 6898361..6898521 | 315..475 | 340 | 80.7 | Plus |
3R | 32079331 | 3R | 16810163..16810323 | 315..475 | 340 | 80.7 | Plus |
3R | 32079331 | 3R | 6801029..6801183 | 469..315 | 220 | 76.1 | Minus |
Blast to na_te.dros performed on 2015-02-03 13:23:30 has no hits.
BS04443.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:48:32 Download gff for
BS04443.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ftz-PA | 313..1233 | 17..937 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:10:01 Download gff for
BS04443.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2047-PA | 313..1233 | 17..937 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:59:48 Download gff for
BS04443.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ftz-RA | 383..1303 | 17..937 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:49:00 Download gff for
BS04443.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ftz-RA | 383..1303 | 17..937 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:49:00 Download gff for
BS04443.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6864706..6865141 | 502..937 | 99 | -> | Minus |
3R | 6865289..6865773 | 17..501 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:59:48 Download gff for
BS04443.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2690428..2690863 | 502..937 | 99 | -> | Minus |
arm_3R | 2691011..2691495 | 17..501 | 100 | | Minus |
BS04443.5prime Sequence
885 bp (745 high quality bases) assembled on 2005-12-01
> BS04443.5prime
GAAGTTATCAGTCGACATGGCCACCACAAACAGCCAGAGCCACTACAGCT
ACGCCGACAACATGAACATGTACAACATGTATCACCCCCACAGCCTGCCG
CCCACCTACTACGATAATTCAGGCAGCAATGCCTACTATCAGAACACCTC
CAATTATCAGGGCTACTATCCCCAGGAGAGTTACTCGGAGAGCTGCTACT
ACTACAACAATCAGGAGCAGGTGACCACCCAGACTGTACCGCCCGTGCAA
CCCACCACCCCGCCGCCCAAGGCCACCAAGCGCAAGGCCGAAGATGATGC
TGCTTCCATCATCGCCGCCGTGGAGGAGCGACCCAGCACACTGAGGGCTC
TGCTCACCAATCCCGTGAAGAAGCTGAAGTACACCCCCGACTATTTCTAC
ACAACCGTCGAGCAGGTGAAGAAGGCTCCCGCCGTAAGCACCAAGGTCAC
CGCCAGCCCCGCTCCCAGCTACGACCAAGAGTACGTGACTGTGCCCACGC
CCAGCGCCTCCGAGGATGTCGACTACTTGGACGTCTACTCGCCCCAGTCG
CAGACGCAGAAGCTGAAGAATGGCGACTTTGCCACCCCTCCGCCAACCAC
GCCCACCTCTCTGCCGCCCCTCGAAGGCATCAGCACGCCACCCCAATCGC
CGGGGGAGAAATCCTCGTCAGCTGTCAGCCAGGAGATCAATCATCGAATT
GTGACAGCCCCGAATGGAGCCGGCGATTTCAATTGGTCGCACATCGAGGA
GACTTTGGCATCAGATTGCAAAGACTCGAAACGCACCCGTCAGACGTACA
CCCGCTACCAGACCCTGGAGCTCGAGAAGGAGTTCCACTTCAATAGATAC
ATCACCCGGCGTCGTCGCATCGATATCGCCAATGC
BS04443.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2047-PA | 1233 | ftz-RA | 1..869 | 17..885 | 4345 | 100 | Plus |
CG1030-PA | 1254 | Scr-RA | 991..1037 | 797..843 | 185 | 95.7 | Plus |
CG1030-PB | 1254 | Scr-RB | 991..1037 | 797..843 | 185 | 95.7 | Plus |
CG1030-PC | 1254 | Scr-RC | 991..1037 | 797..843 | 185 | 95.7 | Plus |
CG10388-PB | 1041 | Ubx-RB | 769..816 | 791..838 | 140 | 91.6 | Plus |
CG10388-PF | 1068 | Ubx-RF | 796..843 | 791..838 | 140 | 91.6 | Plus |
CG10388-PD | 1092 | Ubx-RD | 820..867 | 791..838 | 140 | 91.6 | Plus |
CG10388-PC | 1119 | Ubx-RC | 847..894 | 791..838 | 140 | 91.6 | Plus |
CG10388-PE | 1143 | Ubx-RE | 871..918 | 791..838 | 140 | 91.6 | Plus |
CG10388-PA | 1170 | Ubx-RA | 898..945 | 791..838 | 140 | 91.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:03:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ftz-RA | 1774 | CG2047-RA | 67..939 | 13..885 | 4350 | 99.9 | Plus |
Scr-RB | 3987 | CG1030-RB | 1462..1544 | 797..879 | 220 | 84.3 | Plus |
Scr-RA | 4140 | CG1030-RA | 1615..1697 | 797..879 | 220 | 84.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:03:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6864390..6865141 | 13..764 | 3745 | 99.9 | Plus |
3R | 32079331 | 3R | 6865286..6865409 | 762..885 | 620 | 100 | Plus |
3R | 32079331 | 3R | 6825563..6825645 | 879..797 | 220 | 84.3 | Minus |
3R | 32079331 | 3R | 6898432..6898521 | 880..791 | 210 | 82.2 | Minus |
3R | 32079331 | 3R | 16658997..16659048 | 838..787 | 185 | 90.4 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:03:42 has no hits.
BS04443.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:48:33 Download gff for
BS04443.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ftz-PA | 1..869 | 17..885 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:10:02 Download gff for
BS04443.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2047-PA | 1..869 | 17..885 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:32:39 Download gff for
BS04443.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ftz-RA | 63..939 | 9..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:33:03 Download gff for
BS04443.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ftz-RA | 63..939 | 9..885 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:33:03 Download gff for
BS04443.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6864386..6865141 | 9..764 | 99 | -> | Plus |
3R | 6865289..6865409 | 765..885 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:32:39 Download gff for
BS04443.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2690108..2690863 | 9..764 | 99 | -> | Plus |
arm_3R | 2691011..2691131 | 765..885 | 100 | | Plus |
BS04443.complete Sequence
1265 bp (1265 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ634940
> BS04443.complete
GAAGTTATCAGTCGACATGGCCACCACAAACAGCCAGAGCCACTACAGCT
ACGCCGACAACATGAACATGTACAACATGTATCACCCCCACAGCCTGCCG
CCCACCTACTACGATAATTCAGGCAGCAATGCCTACTATCAGAACACCTC
CAATTATCAGGGCTACTATCCCCAGGAGAGTTACTCGGAGAGCTGCTACT
ACTACAACAATCAGGAGCAGGTGACCACCCAGACTGTACCGCCCGTGCAA
CCCACCACCCCGCCGCCCAAGGCCACCAAGCGCAAGGCCGAAGATGATGC
TGCTTCCATCATCGCCGCCGTGGAGGAGCGACCCAGCACACTGAGGGCTC
TGCTCACCAATCCCGTGAAGAAGCTGAAGTACACCCCCGACTATTTCTAC
ACAACCGTCGAGCAGGTGAAGAAGGCTCCCGCCGTAAGCACCAAGGTCAC
CGCCAGCCCCGCTCCCAGCTACGACCAAGAGTACGTGACTGTGCCCACGC
CCAGCGCCTCCGAGGATGTCGACTACTTGGACGTCTACTCGCCCCAGTCG
CAGACGCAGAAGCTGAAGAATGGCGACTTTGCCACCCCTCCGCCAACCAC
GCCCACCTCTCTGCCGCCCCTCGAAGGCATCAGCACGCCACCCCAATCGC
CGGGGGAGAAATCCTCGTCAGCTGTCAGCCAGGAGATCAATCATCGAATT
GTGACAGCCCCGAATGGAGCCGGCGATTTCAATTGGTCGCACATCGAGGA
GACTTTGGCATCAGATTGCAAAGACTCGAAACGCACCCGTCAGACGTACA
CCCGCTACCAGACCCTGGAGCTCGAGAAGGAGTTCCACTTCAATAGATAC
ATCACCCGGCGTCGTCGCATCGATATCGCCAATGCCCTGAGCCTGAGCGA
AAGGCAGATCAAGATCTGGTTCCAAAACCGACGCATGAAGTCGAAGAAGG
ATCGCACGCTGGACAGCTCCCCGGAGCACTGTGGTGCCGGCTACACCGCG
ATGCTGCCGCCACTGGAGGCCACAAGCACCGCCACCACCGGGGCACCATC
GGTGCCAGTGCCCATGTACCACCACCACCAAACCACCGCCGCCTACCCCG
CTTACAGCCACAGTCACAGTCATGGTTATGGCCTGCTCAATGATTACCCT
CAGCAGCAGACCCACCAGCAGTACGATGCCTACCCGCAGCAGTACCAACA
TCAGTGCAGCTACCAGCAACATCCACAGGACCTCTACCATCTGTCTTGAA
AGCTTTCTAGACCAT
BS04443.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:43:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ftz-RA | 1233 | CG2047-PA | 1..1233 | 17..1249 | 6165 | 100 | Plus |
Scr-RB | 1254 | CG1030-PB | 991..1145 | 797..951 | 400 | 83.9 | Plus |
Scr-RA | 1254 | CG1030-PA | 991..1145 | 797..951 | 400 | 83.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:43:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ftz-RA | 1774 | CG2047-RA | 67..1303 | 13..1249 | 6170 | 99.9 | Plus |
Scr-RB | 3987 | CG1030-RB | 1462..1616 | 797..951 | 400 | 83.9 | Plus |
Scr-RA | 4140 | CG1030-RA | 1615..1769 | 797..951 | 400 | 83.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:43:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6864390..6865141 | 13..764 | 3745 | 99.9 | Plus |
3R | 32079331 | 3R | 6865286..6865773 | 762..1249 | 2440 | 100 | Plus |
3R | 32079331 | 3R | 6825491..6825645 | 951..797 | 400 | 83.9 | Minus |
3R | 32079331 | 3R | 6898361..6898521 | 951..791 | 340 | 80.7 | Minus |
3R | 32079331 | 3R | 16810163..16810323 | 951..791 | 340 | 80.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:43:04 has no hits.
BS04443.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:32:22 Download gff for
BS04443.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ftz-RA | 1..1233 | 17..1249 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:16:32 Download gff for
BS04443.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ftz-RA | 63..1303 | 9..1249 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:36:12 Download gff for
BS04443.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ftz-RA | 71..1302 | 17..1248 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:32:22 Download gff for
BS04443.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ftz-RA | 63..1303 | 9..1249 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:06:49 Download gff for
BS04443.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ftz-RA | 71..1302 | 17..1248 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:06:49 Download gff for
BS04443.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6864394..6865141 | 17..764 | 100 | -> | Plus |
3R | 6865289..6865772 | 765..1248 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:36:12 Download gff for
BS04443.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2690116..2690863 | 17..764 | 100 | -> | Plus |
arm_3R | 2691011..2691494 | 765..1248 | 100 | | Plus |
BS04443.pep Sequence
Translation from 16 to 1248
> BS04443.pep
MATTNSQSHYSYADNMNMYNMYHPHSLPPTYYDNSGSNAYYQNTSNYQGY
YPQESYSESCYYYNNQEQVTTQTVPPVQPTTPPPKATKRKAEDDAASIIA
AVEERPSTLRALLTNPVKKLKYTPDYFYTTVEQVKKAPAVSTKVTASPAP
SYDQEYVTVPTPSASEDVDYLDVYSPQSQTQKLKNGDFATPPPTTPTSLP
PLEGISTPPQSPGEKSSSAVSQEINHRIVTAPNGAGDFNWSHIEETLASD
CKDSKRTRQTYTRYQTLELEKEFHFNRYITRRRRIDIANALSLSERQIKI
WFQNRRMKSKKDRTLDSSPEHCGAGYTAMLPPLEATSTATTGAPSVPVPM
YHHHQTTAAYPAYSHSHSHGYGLLNDYPQQQTHQQYDAYPQQYQHQCSYQ
QHPQDLYHLS*
BS04443.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:38:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ftz-PA | 410 | CG2047-PA | 1..410 | 1..410 | 2214 | 100 | Plus |
Antp-PF | 365 | CG1028-PF | 38..355 | 5..325 | 283 | 28.8 | Plus |
Antp-PE | 365 | CG1028-PE | 38..355 | 5..325 | 283 | 28.8 | Plus |
Antp-PJ | 378 | CG1028-PJ | 38..368 | 5..325 | 283 | 30.5 | Plus |
Antp-PI | 378 | CG1028-PI | 38..368 | 5..325 | 283 | 30.5 | Plus |