Clone BS04443 Report

Search the DGRC for BS04443

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:44
Well:43
Vector:pDNR-Dual
Associated Gene/Transcriptftz-RA
Protein status:BS04443.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04443.3prime Sequence

937 bp (866 high quality bases) assembled on 2005-12-01

> BS04443.3prime
ATGGTCTAGAAAGCTTTCAAGACAGATGGTAGAGGTCCTGTGGATGTTGC
TGGTAGCTGCACTGATGTTGGTACTGCTGCGGGTAGGCATCGTACTGCTG
GTGGGTCTGCTGCTGAGGGTAATCATTGAGCAGGCCATAACCATGACTGT
GACTGTGGCTGTAAGCGGGGTAGGCGGCGGTGGTTTGGTGGTGGTGGTAC
ATGGGCACTGGCACCGATGGTGCCCCGGTGGTGGCGGTGCTTGTGGCCTC
CAGTGGCGGCAGCATCGCGGTGTAGCCGGCACCACAGTGCTCCGGGGAGC
TGTCCAGCGTGCGATCCTTCTTCGACTTCATGCGTCGGTTTTGGAACCAG
ATCTTGATCTGCCTTTCGCTCAGGCTCAGGGCATTGGCGATATCGATGCG
ACGACGCCGGGTGATGTATCTATTGAAGTGGAACTCCTTCTCGAGCTCCA
GGGTCTGGTAGCGGGTGTACGTCTGACGGGTGCGTTTCGAGTCTTTGCAA
TCTGATGCCAAAGTCTCCTCGATGTGCGACCAATTGAAATCGCCGGCTCC
ATTCGGGGCTGTCACAATTCGATGATTGATCTCCTGGCTGACAGCTGACG
AGGATTTCTCCCCCGGCGATTGGGGTGGCGTGCTGATGCCTTCGAGGGGC
GGCAGAGAGGTGGGCGTGGTTGGCGGAGGGGTGGCAAAGTCGCCATTCTT
CAGCTTCTGCGTCTGCGACTGGGGCGAGTAGACGTCCAAGTAGTCGACAT
CCTCGGAGGCGCTGGGCGTGGGCACAGTCACGTACTCTTGGTCGTAGCTG
GGAGCGGGGCTGGCGGTGACCTTGGTGCTTACGGCGGGAGCCTTCTTCAC
CTGCTCGACGGTTGTGTAGAAATAGTCGGGGGTGTACTTCAGCTTTCTCA
CGGGATTGGTGAGCAGAGCCCTCAGTGTGCTGGGTCG

BS04443.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG2047-PA 1233 ftz-RA 313..1233 937..17 4555 99.7 Minus
CG1030-PA 1254 Scr-RA 991..1037 469..423 185 95.7 Minus
CG1030-PB 1254 Scr-RB 991..1037 469..423 185 95.7 Minus
CG1030-PC 1254 Scr-RC 991..1037 469..423 185 95.7 Minus
CG1030-PA 1254 Scr-RA 1097..1145 363..315 170 93.8 Minus
CG1030-PB 1254 Scr-RB 1097..1145 363..315 170 93.8 Minus
CG1030-PC 1254 Scr-RC 1097..1145 363..315 170 93.8 Minus
CG2189-PA 1761 Dfd-RA 1223..1271 363..315 145 91.8 Minus
CG10388-PB 1041 Ubx-RB 769..816 475..428 140 91.6 Minus
CG10388-PF 1068 Ubx-RF 796..843 475..428 140 91.6 Minus
CG10388-PD 1092 Ubx-RD 820..867 475..428 140 91.6 Minus
CG10388-PC 1119 Ubx-RC 847..894 475..428 140 91.6 Minus
CG10388-PE 1143 Ubx-RE 871..918 475..428 140 91.6 Minus
CG10388-PA 1170 Ubx-RA 898..945 475..428 140 91.6 Minus
CG13424-PA 1236 CG13424-RA 483..509 362..336 135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:23:33
Subject Length Description Subject Range Query Range Score Percent Strand
ftz-RA 1774 CG2047-RA 383..1303 937..17 4575 99.8 Minus
Scr-RB 3987 CG1030-RB 1462..1616 469..315 400 83.9 Minus
Scr-RA 4140 CG1030-RA 1615..1769 469..315 400 83.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:23:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6865286..6865773 504..17 2440 100 Minus
3R 32079331 3R 6864706..6865141 937..502 2150 99.5 Minus
3R 32079331 3R 6825491..6825645 315..469 400 83.9 Plus
3R 32079331 3R 6898361..6898521 315..475 340 80.7 Plus
3R 32079331 3R 16810163..16810323 315..475 340 80.7 Plus
3R 32079331 3R 6801029..6801183 469..315 220 76.1 Minus
Blast to na_te.dros performed on 2015-02-03 13:23:30 has no hits.

BS04443.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:48:32 Download gff for BS04443.3prime
Subject Subject Range Query Range Percent Splice Strand
ftz-PA 313..1233 17..937 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:10:01 Download gff for BS04443.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2047-PA 313..1233 17..937 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:59:48 Download gff for BS04443.3prime
Subject Subject Range Query Range Percent Splice Strand
ftz-RA 383..1303 17..937 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:49:00 Download gff for BS04443.3prime
Subject Subject Range Query Range Percent Splice Strand
ftz-RA 383..1303 17..937 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:49:00 Download gff for BS04443.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 6864706..6865141 502..937 99 -> Minus
3R 6865289..6865773 17..501 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:59:48 Download gff for BS04443.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2690428..2690863 502..937 99 -> Minus
arm_3R 2691011..2691495 17..501 100   Minus

BS04443.5prime Sequence

885 bp (745 high quality bases) assembled on 2005-12-01

> BS04443.5prime
GAAGTTATCAGTCGACATGGCCACCACAAACAGCCAGAGCCACTACAGCT
ACGCCGACAACATGAACATGTACAACATGTATCACCCCCACAGCCTGCCG
CCCACCTACTACGATAATTCAGGCAGCAATGCCTACTATCAGAACACCTC
CAATTATCAGGGCTACTATCCCCAGGAGAGTTACTCGGAGAGCTGCTACT
ACTACAACAATCAGGAGCAGGTGACCACCCAGACTGTACCGCCCGTGCAA
CCCACCACCCCGCCGCCCAAGGCCACCAAGCGCAAGGCCGAAGATGATGC
TGCTTCCATCATCGCCGCCGTGGAGGAGCGACCCAGCACACTGAGGGCTC
TGCTCACCAATCCCGTGAAGAAGCTGAAGTACACCCCCGACTATTTCTAC
ACAACCGTCGAGCAGGTGAAGAAGGCTCCCGCCGTAAGCACCAAGGTCAC
CGCCAGCCCCGCTCCCAGCTACGACCAAGAGTACGTGACTGTGCCCACGC
CCAGCGCCTCCGAGGATGTCGACTACTTGGACGTCTACTCGCCCCAGTCG
CAGACGCAGAAGCTGAAGAATGGCGACTTTGCCACCCCTCCGCCAACCAC
GCCCACCTCTCTGCCGCCCCTCGAAGGCATCAGCACGCCACCCCAATCGC
CGGGGGAGAAATCCTCGTCAGCTGTCAGCCAGGAGATCAATCATCGAATT
GTGACAGCCCCGAATGGAGCCGGCGATTTCAATTGGTCGCACATCGAGGA
GACTTTGGCATCAGATTGCAAAGACTCGAAACGCACCCGTCAGACGTACA
CCCGCTACCAGACCCTGGAGCTCGAGAAGGAGTTCCACTTCAATAGATAC
ATCACCCGGCGTCGTCGCATCGATATCGCCAATGC

BS04443.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG2047-PA 1233 ftz-RA 1..869 17..885 4345 100 Plus
CG1030-PA 1254 Scr-RA 991..1037 797..843 185 95.7 Plus
CG1030-PB 1254 Scr-RB 991..1037 797..843 185 95.7 Plus
CG1030-PC 1254 Scr-RC 991..1037 797..843 185 95.7 Plus
CG10388-PB 1041 Ubx-RB 769..816 791..838 140 91.6 Plus
CG10388-PF 1068 Ubx-RF 796..843 791..838 140 91.6 Plus
CG10388-PD 1092 Ubx-RD 820..867 791..838 140 91.6 Plus
CG10388-PC 1119 Ubx-RC 847..894 791..838 140 91.6 Plus
CG10388-PE 1143 Ubx-RE 871..918 791..838 140 91.6 Plus
CG10388-PA 1170 Ubx-RA 898..945 791..838 140 91.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:03:44
Subject Length Description Subject Range Query Range Score Percent Strand
ftz-RA 1774 CG2047-RA 67..939 13..885 4350 99.9 Plus
Scr-RB 3987 CG1030-RB 1462..1544 797..879 220 84.3 Plus
Scr-RA 4140 CG1030-RA 1615..1697 797..879 220 84.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:03:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6864390..6865141 13..764 3745 99.9 Plus
3R 32079331 3R 6865286..6865409 762..885 620 100 Plus
3R 32079331 3R 6825563..6825645 879..797 220 84.3 Minus
3R 32079331 3R 6898432..6898521 880..791 210 82.2 Minus
3R 32079331 3R 16658997..16659048 838..787 185 90.4 Minus
Blast to na_te.dros performed on 2015-02-11 11:03:42 has no hits.

BS04443.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:48:33 Download gff for BS04443.5prime
Subject Subject Range Query Range Percent Splice Strand
ftz-PA 1..869 17..885 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:10:02 Download gff for BS04443.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2047-PA 1..869 17..885 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:32:39 Download gff for BS04443.5prime
Subject Subject Range Query Range Percent Splice Strand
ftz-RA 63..939 9..885 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:33:03 Download gff for BS04443.5prime
Subject Subject Range Query Range Percent Splice Strand
ftz-RA 63..939 9..885 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:33:03 Download gff for BS04443.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 6864386..6865141 9..764 99 -> Plus
3R 6865289..6865409 765..885 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:32:39 Download gff for BS04443.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2690108..2690863 9..764 99 -> Plus
arm_3R 2691011..2691131 765..885 100   Plus

BS04443.complete Sequence

1265 bp (1265 high quality bases) assembled on 2005-09-13

GenBank Submission: FJ634940

> BS04443.complete
GAAGTTATCAGTCGACATGGCCACCACAAACAGCCAGAGCCACTACAGCT
ACGCCGACAACATGAACATGTACAACATGTATCACCCCCACAGCCTGCCG
CCCACCTACTACGATAATTCAGGCAGCAATGCCTACTATCAGAACACCTC
CAATTATCAGGGCTACTATCCCCAGGAGAGTTACTCGGAGAGCTGCTACT
ACTACAACAATCAGGAGCAGGTGACCACCCAGACTGTACCGCCCGTGCAA
CCCACCACCCCGCCGCCCAAGGCCACCAAGCGCAAGGCCGAAGATGATGC
TGCTTCCATCATCGCCGCCGTGGAGGAGCGACCCAGCACACTGAGGGCTC
TGCTCACCAATCCCGTGAAGAAGCTGAAGTACACCCCCGACTATTTCTAC
ACAACCGTCGAGCAGGTGAAGAAGGCTCCCGCCGTAAGCACCAAGGTCAC
CGCCAGCCCCGCTCCCAGCTACGACCAAGAGTACGTGACTGTGCCCACGC
CCAGCGCCTCCGAGGATGTCGACTACTTGGACGTCTACTCGCCCCAGTCG
CAGACGCAGAAGCTGAAGAATGGCGACTTTGCCACCCCTCCGCCAACCAC
GCCCACCTCTCTGCCGCCCCTCGAAGGCATCAGCACGCCACCCCAATCGC
CGGGGGAGAAATCCTCGTCAGCTGTCAGCCAGGAGATCAATCATCGAATT
GTGACAGCCCCGAATGGAGCCGGCGATTTCAATTGGTCGCACATCGAGGA
GACTTTGGCATCAGATTGCAAAGACTCGAAACGCACCCGTCAGACGTACA
CCCGCTACCAGACCCTGGAGCTCGAGAAGGAGTTCCACTTCAATAGATAC
ATCACCCGGCGTCGTCGCATCGATATCGCCAATGCCCTGAGCCTGAGCGA
AAGGCAGATCAAGATCTGGTTCCAAAACCGACGCATGAAGTCGAAGAAGG
ATCGCACGCTGGACAGCTCCCCGGAGCACTGTGGTGCCGGCTACACCGCG
ATGCTGCCGCCACTGGAGGCCACAAGCACCGCCACCACCGGGGCACCATC
GGTGCCAGTGCCCATGTACCACCACCACCAAACCACCGCCGCCTACCCCG
CTTACAGCCACAGTCACAGTCATGGTTATGGCCTGCTCAATGATTACCCT
CAGCAGCAGACCCACCAGCAGTACGATGCCTACCCGCAGCAGTACCAACA
TCAGTGCAGCTACCAGCAACATCCACAGGACCTCTACCATCTGTCTTGAA
AGCTTTCTAGACCAT

BS04443.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:43:05
Subject Length Description Subject Range Query Range Score Percent Strand
ftz-RA 1233 CG2047-PA 1..1233 17..1249 6165 100 Plus
Scr-RB 1254 CG1030-PB 991..1145 797..951 400 83.9 Plus
Scr-RA 1254 CG1030-PA 991..1145 797..951 400 83.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:43:07
Subject Length Description Subject Range Query Range Score Percent Strand
ftz-RA 1774 CG2047-RA 67..1303 13..1249 6170 99.9 Plus
Scr-RB 3987 CG1030-RB 1462..1616 797..951 400 83.9 Plus
Scr-RA 4140 CG1030-RA 1615..1769 797..951 400 83.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:43:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6864390..6865141 13..764 3745 99.9 Plus
3R 32079331 3R 6865286..6865773 762..1249 2440 100 Plus
3R 32079331 3R 6825491..6825645 951..797 400 83.9 Minus
3R 32079331 3R 6898361..6898521 951..791 340 80.7 Minus
3R 32079331 3R 16810163..16810323 951..791 340 80.7 Minus
Blast to na_te.dros performed on 2014-11-27 23:43:04 has no hits.

BS04443.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:32:22 Download gff for BS04443.complete
Subject Subject Range Query Range Percent Splice Strand
ftz-RA 1..1233 17..1249 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:16:32 Download gff for BS04443.complete
Subject Subject Range Query Range Percent Splice Strand
ftz-RA 63..1303 9..1249 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:36:12 Download gff for BS04443.complete
Subject Subject Range Query Range Percent Splice Strand
ftz-RA 71..1302 17..1248 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:32:22 Download gff for BS04443.complete
Subject Subject Range Query Range Percent Splice Strand
ftz-RA 63..1303 9..1249 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:06:49 Download gff for BS04443.complete
Subject Subject Range Query Range Percent Splice Strand
ftz-RA 71..1302 17..1248 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:06:49 Download gff for BS04443.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6864394..6865141 17..764 100 -> Plus
3R 6865289..6865772 765..1248 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:36:12 Download gff for BS04443.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2690116..2690863 17..764 100 -> Plus
arm_3R 2691011..2691494 765..1248 100   Plus

BS04443.pep Sequence

Translation from 16 to 1248

> BS04443.pep
MATTNSQSHYSYADNMNMYNMYHPHSLPPTYYDNSGSNAYYQNTSNYQGY
YPQESYSESCYYYNNQEQVTTQTVPPVQPTTPPPKATKRKAEDDAASIIA
AVEERPSTLRALLTNPVKKLKYTPDYFYTTVEQVKKAPAVSTKVTASPAP
SYDQEYVTVPTPSASEDVDYLDVYSPQSQTQKLKNGDFATPPPTTPTSLP
PLEGISTPPQSPGEKSSSAVSQEINHRIVTAPNGAGDFNWSHIEETLASD
CKDSKRTRQTYTRYQTLELEKEFHFNRYITRRRRIDIANALSLSERQIKI
WFQNRRMKSKKDRTLDSSPEHCGAGYTAMLPPLEATSTATTGAPSVPVPM
YHHHQTTAAYPAYSHSHSHGYGLLNDYPQQQTHQQYDAYPQQYQHQCSYQ
QHPQDLYHLS*

BS04443.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:38:38
Subject Length Description Subject Range Query Range Score Percent Strand
ftz-PA 410 CG2047-PA 1..410 1..410 2214 100 Plus
Antp-PF 365 CG1028-PF 38..355 5..325 283 28.8 Plus
Antp-PE 365 CG1028-PE 38..355 5..325 283 28.8 Plus
Antp-PJ 378 CG1028-PJ 38..368 5..325 283 30.5 Plus
Antp-PI 378 CG1028-PI 38..368 5..325 283 30.5 Plus