Clone BS04444 Report

Search the DGRC for BS04444

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:44
Well:44
Vector:pDNR-Dual
Associated Gene/TranscriptHLH3B-RA
Protein status:BS04444.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04444.3prime Sequence

921 bp (835 high quality bases) assembled on 2005-12-01

> BS04444.3prime
ATGGTCTAGAAAGCTTCTACGTCCTGCGCCGTTTGCCCAGACTGAGATCG
GTGGCTCCGCCTTCCGGCTTGAGGCGTCGCTTGCTACTCCGTCCGCTGGC
CGATTTTACACCGGATACGGTGCCACTGATTCGCTGAGTCTCGGCCATGG
CCAGCGGAGCAGTGGTCAACGGCAGGGGTGGGCCGTTTAACGGATGCCCA
AGTGGGAGTGTAGACTCCAGGAGAAGCTCGCTTTTGACAACGGCTCCCGG
GGCAATCATCAGCAGGTCGTTGCCAGCGTTTCCGTTGGCATGTCCGTGCC
CAATGCCATTCCTGTGCATCTGCCCGTCGGTGCGTTCACACTTGATGTGC
CGTACAGGCGGAACATCTGGATTCTCCAGATTCTCCCCGTCCGCCGCATG
GCCATTGGCCATCCTATTGTCGTTGTTGTTCGGCTCCATTTGAGCCCTGA
TCGGATGCGAGGGCGCCTGCCGCTGCTGCCACTCGAGGATGCCCGTCAGC
AGCTTAATGTACTTAATGGCCGAGCGCAGGATCTCGTTCTTCGATAGCTT
CTTGTCCGGCGGATGTGTGGGCACCAGCTTGCGCAGCTCTGCAAAGGCAC
CGGACACGTTCTGCTGGCGCCATCGCTCCCTTGTGTTGGTGAACACCTTG
CGCACACCGCCGGTGGCTCCTACGCCGCTGCCGCCGCCACTGGATGCATT
GCCGCCGGAGCCATTGCCTCCACCACCGCCGCTACCGCCGACTGAGCTTC
CGGAGCTGGCCGGCGCGGTCAGCAGTCCGTTGCGGGAGTGACTGCGCGGC
GAACTGGACAGTGAGCGATTCGCATCCGCCTGGTTGCCATTCAGAACGAT
GTAATCGCGAAGATCCTCCTCGTCCTCCTCCGTGTCGTTGAGCGAGAAGT
CGGAAAGCTCCGCGTCACCGT

BS04444.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG2655-PA 1131 HLH3B-RA 227..1131 921..17 4525 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:24:04
Subject Length Description Subject Range Query Range Score Percent Strand
HLH3B-RA 1428 CG2655-RA 292..1198 921..15 4535 100 Minus
HLH4C-RB 1424 CG3052-RB 563..632 597..528 230 88.6 Minus
HLH4C-RA 1424 CG3052-RA 563..632 597..528 230 88.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:23:57
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2680429..2681237 15..823 4045 100 Plus
X 23542271 X 2681334..2681432 823..921 495 100 Plus
X 23542271 X 4645919..4645988 528..597 230 88.6 Plus
Blast to na_te.dros performed on 2015-02-01 09:24:00 has no hits.

BS04444.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:48:34 Download gff for BS04444.3prime
Subject Subject Range Query Range Percent Splice Strand
HLH3B-PA 227..1131 17..921 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:10:04 Download gff for BS04444.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2655-PA 227..1131 17..921 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:35:33 Download gff for BS04444.3prime
Subject Subject Range Query Range Percent Splice Strand
HLH3B-RA 292..1198 15..921 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 10:01:05 Download gff for BS04444.3prime
Subject Subject Range Query Range Percent Splice Strand
HLH3B-RA 292..1198 15..921 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 10:01:05 Download gff for BS04444.3prime
Subject Subject Range Query Range Percent Splice Strand
X 2680429..2681236 15..822 100 <- Plus
X 2681334..2681432 823..921 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:35:33 Download gff for BS04444.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2574462..2575269 15..822 100 <- Plus
arm_X 2575367..2575465 823..921 100   Plus

BS04444.5prime Sequence

886 bp (818 high quality bases) assembled on 2005-11-29

> BS04444.5prime
GAAGTTATCAGTCGACATGGCCTGGCTACCGAGCAGCTCGAACGGAGCGG
ATAACGCGGACGAACGGAGCACCGCCTCGAGCGGATCCTCCGGCCACAGC
CAGACCAACGAGTCACCGCGATCCGGGCACCTGAACGGTAATGGTAGCAT
GCGGGACACTGCCGCTGGCAGGCATCCGCCCGCCCTGCTCCGACATGCCA
CGCCCCACCTGCAGCCCAAGACGGAGTCCATATCCGATGGAGACGGTGAC
GCGGAGCTTTCCGACTTCTCGCTCAACGACACGGAGGAGGACGAGGAGGA
TCTTCGCGATTACATCGTTCTGAATGGCAACCAGGCGGATGCGAATCGCT
CACTGTCCAGTTCGCCGCGCAGTCACTCCCGCAACGGACTGCTGACCGCG
CCGGCCAGCTCCGGAAGCTCAGTCGGCGGTAGCGGCGGTGGTGGAGGCAA
TGGCTCCGGCGGCAATGCATCCAGTGGCGGCGGCAGCGGCGTAGGAGCCA
CCGGCGGTGTGCGCAAGGTGTTCACCAACACAAGGGAGCGATGGCGCCAG
CAGAACGTGTCCGGTGCCTTTGCAGAGCTGCGCAAGCTGGTGCCCACACA
TCCGCCGGACAAGAAGCTATCGAAGAACGAGATCCTGCGCTCGGCCATTA
AGTACATTAAGCTGCTGACGGGCATCCTCGAGTGGCAGCAGCGGCAGGCG
CCCTCGCATCCGATCAGGGCTCAAATGGAGCCGAACAACAACGACAATAG
GATGGCCAATGGCCATGCGGCGGACGGGGAGAATCTGGAGAATCCAGATG
TTCCGCCTGTACGGCACATCAAGTGTGAACGCACCGACGGGCAGATGCAC
AGGAATGGCATTGGGCACGGACATGCCAACGGAAAC

BS04444.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG2655-PA 1131 HLH3B-RA 1..870 17..886 4350 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:47:01
Subject Length Description Subject Range Query Range Score Percent Strand
HLH3B-RA 1428 CG2655-RA 66..935 17..886 4350 100 Plus
HLH4C-RB 1424 CG3052-RB 563..632 567..636 230 88.6 Plus
HLH4C-RA 1424 CG3052-RA 563..632 567..636 230 88.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:46:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2680692..2681237 886..341 2730 100 Minus
X 23542271 X 2681334..2681658 341..17 1625 100 Minus
X 23542271 X 4645919..4645988 636..567 230 88.6 Minus
Blast to na_te.dros performed on 2015-02-11 15:46:59 has no hits.

BS04444.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:48:35 Download gff for BS04444.5prime
Subject Subject Range Query Range Percent Splice Strand
HLH3B-PA 1..870 17..886 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:10:05 Download gff for BS04444.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2655-PA 1..870 17..886 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 11:01:41 Download gff for BS04444.5prime
Subject Subject Range Query Range Percent Splice Strand
HLH3B-RA 57..935 7..886 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:23:40 Download gff for BS04444.5prime
Subject Subject Range Query Range Percent Splice Strand
HLH3B-RA 57..935 7..886 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:23:40 Download gff for BS04444.5prime
Subject Subject Range Query Range Percent Splice Strand
X 2680692..2681236 342..886 100 <- Minus
X 2681334..2681667 7..341 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 11:01:41 Download gff for BS04444.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2574725..2575269 342..886 100 <- Minus
arm_X 2575367..2575700 7..341 98   Minus

BS04444.complete Sequence

1163 bp (1163 high quality bases) assembled on 2005-09-13

GenBank Submission: FJ634941

> BS04444.complete
GAAGTTATCAGTCGACATGGCCTGGCTACCGAGCAGCTCGAACGGAGCGG
ATAACGCGGACGAACGGAGCACCGCCTCGAGCGGATCCTCCGGCCACAGC
CAGACCAACGAGTCACCGCGATCCGGGCACCTGAACGGTAATGGTAGCAT
GCGGGACACTGCCGCTGGCAGGCATCCGCCCGCCCTGCTCCGACATGCCA
CGCCCCACCTGCAGCCCAAGACGGAGTCCATATCCGATGGAGACGGTGAC
GCGGAGCTTTCCGACTTCTCGCTCAACGACACGGAGGAGGACGAGGAGGA
TCTTCGCGATTACATCGTTCTGAATGGCAACCAGGCGGATGCGAATCGCT
CACTGTCCAGTTCGCCGCGCAGTCACTCCCGCAACGGACTGCTGACCGCG
CCGGCCAGCTCCGGAAGCTCAGTCGGCGGTAGCGGCGGTGGTGGAGGCAA
TGGCTCCGGCGGCAATGCATCCAGTGGCGGCGGCAGCGGCGTAGGAGCCA
CCGGCGGTGTGCGCAAGGTGTTCACCAACACAAGGGAGCGATGGCGCCAG
CAGAACGTGTCCGGTGCCTTTGCAGAGCTGCGCAAGCTGGTGCCCACACA
TCCGCCGGACAAGAAGCTATCGAAGAACGAGATCCTGCGCTCGGCCATTA
AGTACATTAAGCTGCTGACGGGCATCCTCGAGTGGCAGCAGCGGCAGGCG
CCCTCGCATCCGATCAGGGCTCAAATGGAGCCGAACAACAACGACAATAG
GATGGCCAATGGCCATGCGGCGGACGGGGAGAATCTGGAGAATCCAGATG
TTCCGCCTGTACGGCACATCAAGTGTGAACGCACCGACGGGCAGATGCAC
AGGAATGGCATTGGGCACGGACATGCCAACGGAAACGCTGGCAACGACCT
GCTGATGATTGCCCCGGGAGCCGTTGTCAAAAGCGAGCTTCTCCTGGAGT
CTACACTCCCACTTGGGCATCCGTTAAACGGCCCACCCCTGCCGTTGACC
ACTGCTCCGCTGGCCATGGCCGAGACTCAGCGAATCAGTGGCACCGTATC
CGGTGTAAAATCGGCCAGCGGACGGAGTAGCAAGCGACGCCTCAAGCCGG
AAGGCGGAGCCACCGATCTCAGTCTGGGCAAACGGCGCAGGACGTAGAAG
CTTTCTAGACCAT

BS04444.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:04:34
Subject Length Description Subject Range Query Range Score Percent Strand
HLH3B-RA 1131 CG2655-PA 1..1131 17..1147 5655 100 Plus
HLH4C-RB 576 CG3052-PB 380..449 567..636 230 88.6 Plus
HLH4C-RA 504 CG3052-PA 380..449 567..636 230 88.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:04:35
Subject Length Description Subject Range Query Range Score Percent Strand
HLH3B-RA 1428 CG2655-RA 66..1198 17..1149 5665 100 Plus
HLH4C-RB 1424 CG3052-RB 563..632 567..636 230 88.6 Plus
HLH4C-RA 1424 CG3052-RA 563..632 567..636 230 88.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:04:31
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2680429..2681237 1149..341 4045 100 Minus
X 23542271 X 2681334..2681658 341..17 1625 100 Minus
X 23542271 X 4645919..4645988 636..567 230 88.6 Minus
Blast to na_te.dros performed on 2014-11-27 08:04:33 has no hits.

BS04444.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:50:10 Download gff for BS04444.complete
Subject Subject Range Query Range Percent Splice Strand
HLH3B-RA 1..1131 17..1147 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:38:47 Download gff for BS04444.complete
Subject Subject Range Query Range Percent Splice Strand
HLH3B-RA 57..1198 7..1149 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:28:48 Download gff for BS04444.complete
Subject Subject Range Query Range Percent Splice Strand
HLH3B-RA 66..1196 17..1147 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:50:10 Download gff for BS04444.complete
Subject Subject Range Query Range Percent Splice Strand
HLH3B-RA 57..1198 7..1149 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:10:30 Download gff for BS04444.complete
Subject Subject Range Query Range Percent Splice Strand
HLH3B-RA 66..1196 17..1147 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:10:30 Download gff for BS04444.complete
Subject Subject Range Query Range Percent Splice Strand
X 2680431..2681236 342..1147 100 <- Minus
X 2681334..2681658 17..341 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:28:48 Download gff for BS04444.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2574464..2575269 342..1147 100 <- Minus
arm_X 2575367..2575691 17..341 100   Minus

BS04444.pep Sequence

Translation from 16 to 1146

> BS04444.pep
MAWLPSSSNGADNADERSTASSGSSGHSQTNESPRSGHLNGNGSMRDTAA
GRHPPALLRHATPHLQPKTESISDGDGDAELSDFSLNDTEEDEEDLRDYI
VLNGNQADANRSLSSSPRSHSRNGLLTAPASSGSSVGGSGGGGGNGSGGN
ASSGGGSGVGATGGVRKVFTNTRERWRQQNVSGAFAELRKLVPTHPPDKK
LSKNEILRSAIKYIKLLTGILEWQQRQAPSHPIRAQMEPNNNDNRMANGH
AADGENLENPDVPPVRHIKCERTDGQMHRNGIGHGHANGNAGNDLLMIAP
GAVVKSELLLESTLPLGHPLNGPPLPLTTAPLAMAETQRISGTVSGVKSA
SGRSSKRRLKPEGGATDLSLGKRRRT*

BS04444.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:46:15
Subject Length Description Subject Range Query Range Score Percent Strand
HLH3B-PA 376 CG2655-PA 1..376 1..376 1961 100 Plus
Fer2-PE 273 CG5952-PE 105..205 134..222 153 41.6 Plus
Fer2-PB 274 CG5952-PB 105..205 134..222 153 41.6 Plus