Clone Sequence Records
BS04444.3prime Sequence
921 bp (835 high quality bases) assembled on 2005-12-01
> BS04444.3prime
ATGGTCTAGAAAGCTTCTACGTCCTGCGCCGTTTGCCCAGACTGAGATCG
GTGGCTCCGCCTTCCGGCTTGAGGCGTCGCTTGCTACTCCGTCCGCTGGC
CGATTTTACACCGGATACGGTGCCACTGATTCGCTGAGTCTCGGCCATGG
CCAGCGGAGCAGTGGTCAACGGCAGGGGTGGGCCGTTTAACGGATGCCCA
AGTGGGAGTGTAGACTCCAGGAGAAGCTCGCTTTTGACAACGGCTCCCGG
GGCAATCATCAGCAGGTCGTTGCCAGCGTTTCCGTTGGCATGTCCGTGCC
CAATGCCATTCCTGTGCATCTGCCCGTCGGTGCGTTCACACTTGATGTGC
CGTACAGGCGGAACATCTGGATTCTCCAGATTCTCCCCGTCCGCCGCATG
GCCATTGGCCATCCTATTGTCGTTGTTGTTCGGCTCCATTTGAGCCCTGA
TCGGATGCGAGGGCGCCTGCCGCTGCTGCCACTCGAGGATGCCCGTCAGC
AGCTTAATGTACTTAATGGCCGAGCGCAGGATCTCGTTCTTCGATAGCTT
CTTGTCCGGCGGATGTGTGGGCACCAGCTTGCGCAGCTCTGCAAAGGCAC
CGGACACGTTCTGCTGGCGCCATCGCTCCCTTGTGTTGGTGAACACCTTG
CGCACACCGCCGGTGGCTCCTACGCCGCTGCCGCCGCCACTGGATGCATT
GCCGCCGGAGCCATTGCCTCCACCACCGCCGCTACCGCCGACTGAGCTTC
CGGAGCTGGCCGGCGCGGTCAGCAGTCCGTTGCGGGAGTGACTGCGCGGC
GAACTGGACAGTGAGCGATTCGCATCCGCCTGGTTGCCATTCAGAACGAT
GTAATCGCGAAGATCCTCCTCGTCCTCCTCCGTGTCGTTGAGCGAGAAGT
CGGAAAGCTCCGCGTCACCGT
BS04444.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2655-PA | 1131 | HLH3B-RA | 227..1131 | 921..17 | 4525 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:24:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HLH3B-RA | 1428 | CG2655-RA | 292..1198 | 921..15 | 4535 | 100 | Minus |
HLH4C-RB | 1424 | CG3052-RB | 563..632 | 597..528 | 230 | 88.6 | Minus |
HLH4C-RA | 1424 | CG3052-RA | 563..632 | 597..528 | 230 | 88.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:23:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2680429..2681237 | 15..823 | 4045 | 100 | Plus |
X | 23542271 | X | 2681334..2681432 | 823..921 | 495 | 100 | Plus |
X | 23542271 | X | 4645919..4645988 | 528..597 | 230 | 88.6 | Plus |
Blast to na_te.dros performed on 2015-02-01 09:24:00 has no hits.
BS04444.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:48:34 Download gff for
BS04444.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HLH3B-PA | 227..1131 | 17..921 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:10:04 Download gff for
BS04444.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2655-PA | 227..1131 | 17..921 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:35:33 Download gff for
BS04444.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HLH3B-RA | 292..1198 | 15..921 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 10:01:05 Download gff for
BS04444.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HLH3B-RA | 292..1198 | 15..921 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 10:01:05 Download gff for
BS04444.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2680429..2681236 | 15..822 | 100 | <- | Plus |
X | 2681334..2681432 | 823..921 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:35:33 Download gff for
BS04444.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2574462..2575269 | 15..822 | 100 | <- | Plus |
arm_X | 2575367..2575465 | 823..921 | 100 | | Plus |
BS04444.5prime Sequence
886 bp (818 high quality bases) assembled on 2005-11-29
> BS04444.5prime
GAAGTTATCAGTCGACATGGCCTGGCTACCGAGCAGCTCGAACGGAGCGG
ATAACGCGGACGAACGGAGCACCGCCTCGAGCGGATCCTCCGGCCACAGC
CAGACCAACGAGTCACCGCGATCCGGGCACCTGAACGGTAATGGTAGCAT
GCGGGACACTGCCGCTGGCAGGCATCCGCCCGCCCTGCTCCGACATGCCA
CGCCCCACCTGCAGCCCAAGACGGAGTCCATATCCGATGGAGACGGTGAC
GCGGAGCTTTCCGACTTCTCGCTCAACGACACGGAGGAGGACGAGGAGGA
TCTTCGCGATTACATCGTTCTGAATGGCAACCAGGCGGATGCGAATCGCT
CACTGTCCAGTTCGCCGCGCAGTCACTCCCGCAACGGACTGCTGACCGCG
CCGGCCAGCTCCGGAAGCTCAGTCGGCGGTAGCGGCGGTGGTGGAGGCAA
TGGCTCCGGCGGCAATGCATCCAGTGGCGGCGGCAGCGGCGTAGGAGCCA
CCGGCGGTGTGCGCAAGGTGTTCACCAACACAAGGGAGCGATGGCGCCAG
CAGAACGTGTCCGGTGCCTTTGCAGAGCTGCGCAAGCTGGTGCCCACACA
TCCGCCGGACAAGAAGCTATCGAAGAACGAGATCCTGCGCTCGGCCATTA
AGTACATTAAGCTGCTGACGGGCATCCTCGAGTGGCAGCAGCGGCAGGCG
CCCTCGCATCCGATCAGGGCTCAAATGGAGCCGAACAACAACGACAATAG
GATGGCCAATGGCCATGCGGCGGACGGGGAGAATCTGGAGAATCCAGATG
TTCCGCCTGTACGGCACATCAAGTGTGAACGCACCGACGGGCAGATGCAC
AGGAATGGCATTGGGCACGGACATGCCAACGGAAAC
BS04444.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2655-PA | 1131 | HLH3B-RA | 1..870 | 17..886 | 4350 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:47:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HLH3B-RA | 1428 | CG2655-RA | 66..935 | 17..886 | 4350 | 100 | Plus |
HLH4C-RB | 1424 | CG3052-RB | 563..632 | 567..636 | 230 | 88.6 | Plus |
HLH4C-RA | 1424 | CG3052-RA | 563..632 | 567..636 | 230 | 88.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:46:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2680692..2681237 | 886..341 | 2730 | 100 | Minus |
X | 23542271 | X | 2681334..2681658 | 341..17 | 1625 | 100 | Minus |
X | 23542271 | X | 4645919..4645988 | 636..567 | 230 | 88.6 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:46:59 has no hits.
BS04444.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:48:35 Download gff for
BS04444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HLH3B-PA | 1..870 | 17..886 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:10:05 Download gff for
BS04444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2655-PA | 1..870 | 17..886 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 11:01:41 Download gff for
BS04444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HLH3B-RA | 57..935 | 7..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:23:40 Download gff for
BS04444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HLH3B-RA | 57..935 | 7..886 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:23:40 Download gff for
BS04444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2680692..2681236 | 342..886 | 100 | <- | Minus |
X | 2681334..2681667 | 7..341 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 11:01:41 Download gff for
BS04444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2574725..2575269 | 342..886 | 100 | <- | Minus |
arm_X | 2575367..2575700 | 7..341 | 98 | | Minus |
BS04444.complete Sequence
1163 bp (1163 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ634941
> BS04444.complete
GAAGTTATCAGTCGACATGGCCTGGCTACCGAGCAGCTCGAACGGAGCGG
ATAACGCGGACGAACGGAGCACCGCCTCGAGCGGATCCTCCGGCCACAGC
CAGACCAACGAGTCACCGCGATCCGGGCACCTGAACGGTAATGGTAGCAT
GCGGGACACTGCCGCTGGCAGGCATCCGCCCGCCCTGCTCCGACATGCCA
CGCCCCACCTGCAGCCCAAGACGGAGTCCATATCCGATGGAGACGGTGAC
GCGGAGCTTTCCGACTTCTCGCTCAACGACACGGAGGAGGACGAGGAGGA
TCTTCGCGATTACATCGTTCTGAATGGCAACCAGGCGGATGCGAATCGCT
CACTGTCCAGTTCGCCGCGCAGTCACTCCCGCAACGGACTGCTGACCGCG
CCGGCCAGCTCCGGAAGCTCAGTCGGCGGTAGCGGCGGTGGTGGAGGCAA
TGGCTCCGGCGGCAATGCATCCAGTGGCGGCGGCAGCGGCGTAGGAGCCA
CCGGCGGTGTGCGCAAGGTGTTCACCAACACAAGGGAGCGATGGCGCCAG
CAGAACGTGTCCGGTGCCTTTGCAGAGCTGCGCAAGCTGGTGCCCACACA
TCCGCCGGACAAGAAGCTATCGAAGAACGAGATCCTGCGCTCGGCCATTA
AGTACATTAAGCTGCTGACGGGCATCCTCGAGTGGCAGCAGCGGCAGGCG
CCCTCGCATCCGATCAGGGCTCAAATGGAGCCGAACAACAACGACAATAG
GATGGCCAATGGCCATGCGGCGGACGGGGAGAATCTGGAGAATCCAGATG
TTCCGCCTGTACGGCACATCAAGTGTGAACGCACCGACGGGCAGATGCAC
AGGAATGGCATTGGGCACGGACATGCCAACGGAAACGCTGGCAACGACCT
GCTGATGATTGCCCCGGGAGCCGTTGTCAAAAGCGAGCTTCTCCTGGAGT
CTACACTCCCACTTGGGCATCCGTTAAACGGCCCACCCCTGCCGTTGACC
ACTGCTCCGCTGGCCATGGCCGAGACTCAGCGAATCAGTGGCACCGTATC
CGGTGTAAAATCGGCCAGCGGACGGAGTAGCAAGCGACGCCTCAAGCCGG
AAGGCGGAGCCACCGATCTCAGTCTGGGCAAACGGCGCAGGACGTAGAAG
CTTTCTAGACCAT
BS04444.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:04:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HLH3B-RA | 1131 | CG2655-PA | 1..1131 | 17..1147 | 5655 | 100 | Plus |
HLH4C-RB | 576 | CG3052-PB | 380..449 | 567..636 | 230 | 88.6 | Plus |
HLH4C-RA | 504 | CG3052-PA | 380..449 | 567..636 | 230 | 88.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:04:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HLH3B-RA | 1428 | CG2655-RA | 66..1198 | 17..1149 | 5665 | 100 | Plus |
HLH4C-RB | 1424 | CG3052-RB | 563..632 | 567..636 | 230 | 88.6 | Plus |
HLH4C-RA | 1424 | CG3052-RA | 563..632 | 567..636 | 230 | 88.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:04:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2680429..2681237 | 1149..341 | 4045 | 100 | Minus |
X | 23542271 | X | 2681334..2681658 | 341..17 | 1625 | 100 | Minus |
X | 23542271 | X | 4645919..4645988 | 636..567 | 230 | 88.6 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:04:33 has no hits.
BS04444.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:50:10 Download gff for
BS04444.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HLH3B-RA | 1..1131 | 17..1147 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:38:47 Download gff for
BS04444.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HLH3B-RA | 57..1198 | 7..1149 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:28:48 Download gff for
BS04444.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HLH3B-RA | 66..1196 | 17..1147 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:50:10 Download gff for
BS04444.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HLH3B-RA | 57..1198 | 7..1149 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:10:30 Download gff for
BS04444.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HLH3B-RA | 66..1196 | 17..1147 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:10:30 Download gff for
BS04444.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2680431..2681236 | 342..1147 | 100 | <- | Minus |
X | 2681334..2681658 | 17..341 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:28:48 Download gff for
BS04444.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2574464..2575269 | 342..1147 | 100 | <- | Minus |
arm_X | 2575367..2575691 | 17..341 | 100 | | Minus |
BS04444.pep Sequence
Translation from 16 to 1146
> BS04444.pep
MAWLPSSSNGADNADERSTASSGSSGHSQTNESPRSGHLNGNGSMRDTAA
GRHPPALLRHATPHLQPKTESISDGDGDAELSDFSLNDTEEDEEDLRDYI
VLNGNQADANRSLSSSPRSHSRNGLLTAPASSGSSVGGSGGGGGNGSGGN
ASSGGGSGVGATGGVRKVFTNTRERWRQQNVSGAFAELRKLVPTHPPDKK
LSKNEILRSAIKYIKLLTGILEWQQRQAPSHPIRAQMEPNNNDNRMANGH
AADGENLENPDVPPVRHIKCERTDGQMHRNGIGHGHANGNAGNDLLMIAP
GAVVKSELLLESTLPLGHPLNGPPLPLTTAPLAMAETQRISGTVSGVKSA
SGRSSKRRLKPEGGATDLSLGKRRRT*
BS04444.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:46:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HLH3B-PA | 376 | CG2655-PA | 1..376 | 1..376 | 1961 | 100 | Plus |
Fer2-PE | 273 | CG5952-PE | 105..205 | 134..222 | 153 | 41.6 | Plus |
Fer2-PB | 274 | CG5952-PB | 105..205 | 134..222 | 153 | 41.6 | Plus |