Clone BS04446 Report

Search the DGRC for BS04446

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:44
Well:46
Vector:pDNR-Dual
Associated Gene/TranscriptCG30417-RA
Protein status:BS04446.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04446.3prime Sequence

837 bp (836 high quality bases) assembled on 2005-12-01

> BS04446.3prime
ATGGTCTAGAAAGCTTTCAATTATATTTGGGCTTGGTGCGGGCCACTCTT
TTGCCGGTGAACCCCTTGCTGGCCAAATAATCACGGATGCCGCGTTTGGT
GTGCACCTTCAGTTTGCAGATGTCGAACTCCAGCTCCTTGTTGCAGTACT
CGGCGCCCTCCATGCGTTGAATGAAATGGATGACGTGGAGCAGCACCTCG
CCGTCCAGCTGCTGAATCTTGGCGTGCAGATCAAGGTCCTCCTCGGTTGT
AAAGGGCTCCTGCTGCTCCGAAGTTTCCAAAGTTGCCGGCGGAGTCCAAT
CGGGGGTCGGAGTACATTCGGTGGTTGGAGTACATGAGGGGGGCGCACCC
ATTATGGAGGGGGACACCTCCGAGCCGTTCACCTCGTCCTCCGGCGATGA
TGAGTCCGATTCATCCGAGGAGCTCTCTTCCTCGGCACGCACTTTACTGC
CGCTGGAGCAGATGTAGAGCTGCACCTGGGAGTACATCTCCTCAAAGATG
ATCTGCAGCTGTTTGGCCATGTGGTAGCACAGGTGATCGGGATTCGTGTA
CAGATAGGTGTTGTAGAAAATCAGCCTTATGTCTTTGGCGAAATCCGCGG
CACTGAGATAGCAACCCGTATTCAAACGATGCCTCACGGTGGACAGATCC
ATGGGTTCCCGGACAATCTCATGGTAATCGTGGAGGCCCAGCAGTTGCGG
ATCCAGTGGCTCGTAGAAAACCCAAGCAATATTCTTATAGGTACTGGAAA
ACAACCTTTTAATAATCACCTTGCAGGCATTAATTTCCGGCGAGGACCGT
TCAGTTTCTTGTTTTGCAGCCATGTCGACTGATAACT

BS04446.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG30417-PA 807 CG30417-RA 1..807 823..17 4035 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:31:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG30417-RA 843 CG30417-RA 26..832 823..17 4035 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:31:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23326750..23327556 17..823 4035 100 Plus
Blast to na_te.dros performed on 2015-02-11 10:31:06 has no hits.

BS04446.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:48:38 Download gff for BS04446.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30417-PA 1..807 17..823 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:10:09 Download gff for BS04446.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30417-PA 1..807 17..823 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:07:30 Download gff for BS04446.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30417-RA 20..840 5..832 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:28:44 Download gff for BS04446.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30417-RA 20..840 5..832 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:28:44 Download gff for BS04446.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 23326742..23327562 5..832 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:07:30 Download gff for BS04446.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19214265..19215085 5..832 99   Plus

BS04446.5prime Sequence

837 bp (831 high quality bases) assembled on 2005-12-01

> BS04446.5prime
GAAGTTATCAGTCGACATGGCTGCAAAACAAGAAACTGAACGGTCCTCGC
CGGAAATTAATGCCTGCAAGGTGATTATTAAAAGGTTGTTTTCCAGTACC
TATAAGAATATTGCTTGGGTTTTCTACGAGCCACTGGATCCGCAACTGCT
GGGCCTCCACGATTACCATGAGATTGTCCGGGAACCCATGGATCTGTCCA
CCGTGAGGCATCGTTTGAATACGGGTTGCTATCTCAGTGCCGCGGATTTC
GCCAAAGACATAAGGCTGATTTTCTACAACACCTATCTGTACACGAATCC
CGATCACCTGTGCTACCACATGGCCAAACAGCTGCAGATCATCTTTGAGG
AGATGTACTCCCAGGTGCAGCTCTACATCTGCTCCAGCGGCAGTAAAGTG
CGTGCCGAGGAAGAGAGCTCCTCGGATGAATCGGACTCATCATCGCCGGA
GGACGAGGTGAACGGCTCGGAGGTGTCCCCCTCCATAATGGGTGCGCCCC
CCTCATGTACTCCAACCACCGAATGTACTCCGACCCCCGATTGGACTCCG
CCGGCAACTTTGGAAACTTCGGAGCAGCAGGAGCCCTTTACAACCGAGGA
GGACCTTGATCTGCACGCCAAGATTCAGCAGCTGGACGGCGAGGTGCTGC
TCCACGTCATCCATTTCATTCAACGCATGGAGGGCGCCGAGTACTGCAAC
AAGGAGCTGGAGTTCGACATCTGCAAACTGAAGGTGCACACCAAACGCGG
CATCCGTGATTATTTGGCCAGCAAGGGGTTCACCGGCAAAAGAGTGGCCC
GCACCAAGCCCAAATATAATTGAAAGCTTTCTAGACC

BS04446.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG30417-PA 807 CG30417-RA 1..807 17..823 4035 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:28:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG30417-RA 843 CG30417-RA 26..832 17..823 4035 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:28:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23326750..23327556 823..17 4035 100 Minus
Blast to na_te.dros performed on 2015-02-12 19:28:46 has no hits.

BS04446.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:48:39 Download gff for BS04446.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30417-PA 1..807 17..823 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:10:10 Download gff for BS04446.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30417-PA 1..807 17..823 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:29:44 Download gff for BS04446.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30417-RA 20..840 8..835 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:32:51 Download gff for BS04446.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30417-RA 20..840 8..835 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:32:51 Download gff for BS04446.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23326742..23327562 8..835 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:29:44 Download gff for BS04446.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19214265..19215085 8..835 99   Minus

BS04446.complete Sequence

839 bp (839 high quality bases) assembled on 2005-09-13

GenBank Submission: FJ634942

> BS04446.complete
GAAGTTATCAGTCGACATGGCTGCAAAACAAGAAACTGAACGGTCCTCGC
CGGAAATTAATGCCTGCAAGGTGATTATTAAAAGGTTGTTTTCCAGTACC
TATAAGAATATTGCTTGGGTTTTCTACGAGCCACTGGATCCGCAACTGCT
GGGCCTCCACGATTACCATGAGATTGTCCGGGAACCCATGGATCTGTCCA
CCGTGAGGCATCGTTTGAATACGGGTTGCTATCTCAGTGCCGCGGATTTC
GCCAAAGACATAAGGCTGATTTTCTACAACACCTATCTGTACACGAATCC
CGATCACCTGTGCTACCACATGGCCAAACAGCTGCAGATCATCTTTGAGG
AGATGTACTCCCAGGTGCAGCTCTACATCTGCTCCAGCGGCAGTAAAGTG
CGTGCCGAGGAAGAGAGCTCCTCGGATGAATCGGACTCATCATCGCCGGA
GGACGAGGTGAACGGCTCGGAGGTGTCCCCCTCCATAATGGGTGCGCCCC
CCTCATGTACTCCAACCACCGAATGTACTCCGACCCCCGATTGGACTCCG
CCGGCAACTTTGGAAACTTCGGAGCAGCAGGAGCCCTTTACAACCGAGGA
GGACCTTGATCTGCACGCCAAGATTCAGCAGCTGGACGGCGAGGTGCTGC
TCCACGTCATCCATTTCATTCAACGCATGGAGGGCGCCGAGTACTGCAAC
AAGGAGCTGGAGTTCGACATCTGCAAACTGAAGGTGCACACCAAACGCGG
CATCCGTGATTATTTGGCCAGCAAGGGGTTCACCGGCAAAAGAGTGGCCC
GCACCAAGCCCAAATATAATTGAAAGCTTTCTAGACCAT

BS04446.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:38:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG30417-RA 807 CG30417-PA 1..807 17..823 4035 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:38:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG30417-RA 843 CG30417-RA 26..832 17..823 4035 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:38:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23326750..23327556 823..17 4035 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:38:03 has no hits.

BS04446.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:32:23 Download gff for BS04446.complete
Subject Subject Range Query Range Percent Splice Strand
CG30417-RA 1..807 17..823 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:16:33 Download gff for BS04446.complete
Subject Subject Range Query Range Percent Splice Strand
CG30417-RA 1..807 17..823 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:09:31 Download gff for BS04446.complete
Subject Subject Range Query Range Percent Splice Strand
CG30417-RA 26..831 17..822 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:32:23 Download gff for BS04446.complete
Subject Subject Range Query Range Percent Splice Strand
CG30417-RA 1..807 17..823 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:22:58 Download gff for BS04446.complete
Subject Subject Range Query Range Percent Splice Strand
CG30417-RA 26..831 17..822 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:22:58 Download gff for BS04446.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23326751..23327556 17..822 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:09:31 Download gff for BS04446.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19214274..19215079 17..822 100   Minus

BS04446.pep Sequence

Translation from 16 to 822

> BS04446.pep
MAAKQETERSSPEINACKVIIKRLFSSTYKNIAWVFYEPLDPQLLGLHDY
HEIVREPMDLSTVRHRLNTGCYLSAADFAKDIRLIFYNTYLYTNPDHLCY
HMAKQLQIIFEEMYSQVQLYICSSGSKVRAEEESSSDESDSSSPEDEVNG
SEVSPSIMGAPPSCTPTTECTPTPDWTPPATLETSEQQEPFTTEEDLDLH
AKIQQLDGEVLLHVIHFIQRMEGAEYCNKELEFDICKLKVHTKRGIRDYL
ASKGFTGKRVARTKPKYN*

BS04446.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG30417-PA 268 CG30417-PA 1..268 1..268 1423 100 Plus
fs(1)h-PH 1105 CG2252-PH 463..579 1..117 290 43.6 Plus
fs(1)h-PF 1110 CG2252-PF 468..584 1..117 290 43.6 Plus
fs(1)h-PE 1110 CG2252-PE 468..584 1..117 290 43.6 Plus
fs(1)h-PD 1110 CG2252-PD 468..584 1..117 290 43.6 Plus
fs(1)h-PH 1105 CG2252-PH 30..133 8..110 178 33.7 Plus
fs(1)h-PF 1110 CG2252-PF 30..133 8..110 178 33.7 Plus
fs(1)h-PE 1110 CG2252-PE 30..133 8..110 178 33.7 Plus