Clone Sequence Records
BS04446.3prime Sequence
837 bp (836 high quality bases) assembled on 2005-12-01
> BS04446.3prime
ATGGTCTAGAAAGCTTTCAATTATATTTGGGCTTGGTGCGGGCCACTCTT
TTGCCGGTGAACCCCTTGCTGGCCAAATAATCACGGATGCCGCGTTTGGT
GTGCACCTTCAGTTTGCAGATGTCGAACTCCAGCTCCTTGTTGCAGTACT
CGGCGCCCTCCATGCGTTGAATGAAATGGATGACGTGGAGCAGCACCTCG
CCGTCCAGCTGCTGAATCTTGGCGTGCAGATCAAGGTCCTCCTCGGTTGT
AAAGGGCTCCTGCTGCTCCGAAGTTTCCAAAGTTGCCGGCGGAGTCCAAT
CGGGGGTCGGAGTACATTCGGTGGTTGGAGTACATGAGGGGGGCGCACCC
ATTATGGAGGGGGACACCTCCGAGCCGTTCACCTCGTCCTCCGGCGATGA
TGAGTCCGATTCATCCGAGGAGCTCTCTTCCTCGGCACGCACTTTACTGC
CGCTGGAGCAGATGTAGAGCTGCACCTGGGAGTACATCTCCTCAAAGATG
ATCTGCAGCTGTTTGGCCATGTGGTAGCACAGGTGATCGGGATTCGTGTA
CAGATAGGTGTTGTAGAAAATCAGCCTTATGTCTTTGGCGAAATCCGCGG
CACTGAGATAGCAACCCGTATTCAAACGATGCCTCACGGTGGACAGATCC
ATGGGTTCCCGGACAATCTCATGGTAATCGTGGAGGCCCAGCAGTTGCGG
ATCCAGTGGCTCGTAGAAAACCCAAGCAATATTCTTATAGGTACTGGAAA
ACAACCTTTTAATAATCACCTTGCAGGCATTAATTTCCGGCGAGGACCGT
TCAGTTTCTTGTTTTGCAGCCATGTCGACTGATAACT
BS04446.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30417-PA | 807 | CG30417-RA | 1..807 | 823..17 | 4035 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:31:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30417-RA | 843 | CG30417-RA | 26..832 | 823..17 | 4035 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:31:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23326750..23327556 | 17..823 | 4035 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:31:06 has no hits.
BS04446.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:48:38 Download gff for
BS04446.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30417-PA | 1..807 | 17..823 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:10:09 Download gff for
BS04446.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30417-PA | 1..807 | 17..823 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:07:30 Download gff for
BS04446.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30417-RA | 20..840 | 5..832 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:28:44 Download gff for
BS04446.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30417-RA | 20..840 | 5..832 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:28:44 Download gff for
BS04446.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23326742..23327562 | 5..832 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:07:30 Download gff for
BS04446.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19214265..19215085 | 5..832 | 99 | | Plus |
BS04446.5prime Sequence
837 bp (831 high quality bases) assembled on 2005-12-01
> BS04446.5prime
GAAGTTATCAGTCGACATGGCTGCAAAACAAGAAACTGAACGGTCCTCGC
CGGAAATTAATGCCTGCAAGGTGATTATTAAAAGGTTGTTTTCCAGTACC
TATAAGAATATTGCTTGGGTTTTCTACGAGCCACTGGATCCGCAACTGCT
GGGCCTCCACGATTACCATGAGATTGTCCGGGAACCCATGGATCTGTCCA
CCGTGAGGCATCGTTTGAATACGGGTTGCTATCTCAGTGCCGCGGATTTC
GCCAAAGACATAAGGCTGATTTTCTACAACACCTATCTGTACACGAATCC
CGATCACCTGTGCTACCACATGGCCAAACAGCTGCAGATCATCTTTGAGG
AGATGTACTCCCAGGTGCAGCTCTACATCTGCTCCAGCGGCAGTAAAGTG
CGTGCCGAGGAAGAGAGCTCCTCGGATGAATCGGACTCATCATCGCCGGA
GGACGAGGTGAACGGCTCGGAGGTGTCCCCCTCCATAATGGGTGCGCCCC
CCTCATGTACTCCAACCACCGAATGTACTCCGACCCCCGATTGGACTCCG
CCGGCAACTTTGGAAACTTCGGAGCAGCAGGAGCCCTTTACAACCGAGGA
GGACCTTGATCTGCACGCCAAGATTCAGCAGCTGGACGGCGAGGTGCTGC
TCCACGTCATCCATTTCATTCAACGCATGGAGGGCGCCGAGTACTGCAAC
AAGGAGCTGGAGTTCGACATCTGCAAACTGAAGGTGCACACCAAACGCGG
CATCCGTGATTATTTGGCCAGCAAGGGGTTCACCGGCAAAAGAGTGGCCC
GCACCAAGCCCAAATATAATTGAAAGCTTTCTAGACC
BS04446.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30417-PA | 807 | CG30417-RA | 1..807 | 17..823 | 4035 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:28:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30417-RA | 843 | CG30417-RA | 26..832 | 17..823 | 4035 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:28:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23326750..23327556 | 823..17 | 4035 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:28:46 has no hits.
BS04446.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:48:39 Download gff for
BS04446.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30417-PA | 1..807 | 17..823 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:10:10 Download gff for
BS04446.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30417-PA | 1..807 | 17..823 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:29:44 Download gff for
BS04446.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30417-RA | 20..840 | 8..835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:32:51 Download gff for
BS04446.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30417-RA | 20..840 | 8..835 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:32:51 Download gff for
BS04446.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23326742..23327562 | 8..835 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:29:44 Download gff for
BS04446.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19214265..19215085 | 8..835 | 99 | | Minus |
BS04446.complete Sequence
839 bp (839 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ634942
> BS04446.complete
GAAGTTATCAGTCGACATGGCTGCAAAACAAGAAACTGAACGGTCCTCGC
CGGAAATTAATGCCTGCAAGGTGATTATTAAAAGGTTGTTTTCCAGTACC
TATAAGAATATTGCTTGGGTTTTCTACGAGCCACTGGATCCGCAACTGCT
GGGCCTCCACGATTACCATGAGATTGTCCGGGAACCCATGGATCTGTCCA
CCGTGAGGCATCGTTTGAATACGGGTTGCTATCTCAGTGCCGCGGATTTC
GCCAAAGACATAAGGCTGATTTTCTACAACACCTATCTGTACACGAATCC
CGATCACCTGTGCTACCACATGGCCAAACAGCTGCAGATCATCTTTGAGG
AGATGTACTCCCAGGTGCAGCTCTACATCTGCTCCAGCGGCAGTAAAGTG
CGTGCCGAGGAAGAGAGCTCCTCGGATGAATCGGACTCATCATCGCCGGA
GGACGAGGTGAACGGCTCGGAGGTGTCCCCCTCCATAATGGGTGCGCCCC
CCTCATGTACTCCAACCACCGAATGTACTCCGACCCCCGATTGGACTCCG
CCGGCAACTTTGGAAACTTCGGAGCAGCAGGAGCCCTTTACAACCGAGGA
GGACCTTGATCTGCACGCCAAGATTCAGCAGCTGGACGGCGAGGTGCTGC
TCCACGTCATCCATTTCATTCAACGCATGGAGGGCGCCGAGTACTGCAAC
AAGGAGCTGGAGTTCGACATCTGCAAACTGAAGGTGCACACCAAACGCGG
CATCCGTGATTATTTGGCCAGCAAGGGGTTCACCGGCAAAAGAGTGGCCC
GCACCAAGCCCAAATATAATTGAAAGCTTTCTAGACCAT
BS04446.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:38:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30417-RA | 807 | CG30417-PA | 1..807 | 17..823 | 4035 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:38:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30417-RA | 843 | CG30417-RA | 26..832 | 17..823 | 4035 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:38:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23326750..23327556 | 823..17 | 4035 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:38:03 has no hits.
BS04446.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:32:23 Download gff for
BS04446.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30417-RA | 1..807 | 17..823 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:16:33 Download gff for
BS04446.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30417-RA | 1..807 | 17..823 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:09:31 Download gff for
BS04446.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30417-RA | 26..831 | 17..822 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:32:23 Download gff for
BS04446.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30417-RA | 1..807 | 17..823 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:22:58 Download gff for
BS04446.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30417-RA | 26..831 | 17..822 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:22:58 Download gff for
BS04446.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23326751..23327556 | 17..822 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:09:31 Download gff for
BS04446.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19214274..19215079 | 17..822 | 100 | | Minus |
BS04446.pep Sequence
Translation from 16 to 822
> BS04446.pep
MAAKQETERSSPEINACKVIIKRLFSSTYKNIAWVFYEPLDPQLLGLHDY
HEIVREPMDLSTVRHRLNTGCYLSAADFAKDIRLIFYNTYLYTNPDHLCY
HMAKQLQIIFEEMYSQVQLYICSSGSKVRAEEESSSDESDSSSPEDEVNG
SEVSPSIMGAPPSCTPTTECTPTPDWTPPATLETSEQQEPFTTEEDLDLH
AKIQQLDGEVLLHVIHFIQRMEGAEYCNKELEFDICKLKVHTKRGIRDYL
ASKGFTGKRVARTKPKYN*
BS04446.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30417-PA | 268 | CG30417-PA | 1..268 | 1..268 | 1423 | 100 | Plus |
fs(1)h-PH | 1105 | CG2252-PH | 463..579 | 1..117 | 290 | 43.6 | Plus |
fs(1)h-PF | 1110 | CG2252-PF | 468..584 | 1..117 | 290 | 43.6 | Plus |
fs(1)h-PE | 1110 | CG2252-PE | 468..584 | 1..117 | 290 | 43.6 | Plus |
fs(1)h-PD | 1110 | CG2252-PD | 468..584 | 1..117 | 290 | 43.6 | Plus |
fs(1)h-PH | 1105 | CG2252-PH | 30..133 | 8..110 | 178 | 33.7 | Plus |
fs(1)h-PF | 1110 | CG2252-PF | 30..133 | 8..110 | 178 | 33.7 | Plus |
fs(1)h-PE | 1110 | CG2252-PE | 30..133 | 8..110 | 178 | 33.7 | Plus |