Clone BS04448 Report

Search the DGRC for BS04448

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:44
Well:48
Vector:pDNR-Dual
Associated Gene/TranscriptOpbp-RA
Protein status:BS04448.pep: full length peptide match
Sequenced Size:1721

Clone Sequence Records

BS04448.3prime Sequence

906 bp (882 high quality bases) assembled on 2005-12-01

> BS04448.3prime
ATGGTCTAGAAAGCTTCTACTTAAGCCAATCTGTAATAACTTCCTCGCTG
TGGAAGTTATCCACGTCAAACACAACGCACTCTTCGTAGGTGGGTACGGT
GCCCACGATGTCTACATCGTTTACCACAGCGTTTATGTAAGCGGCATCTG
CCTCGGCTGCCGCTATCAACACCGCAGTCTCGGAATCATCGGTCTCAGCG
ACGTGTGCAGCATCAGTTGAGGTGGCGGGATTCTCCTGCTCCTCCACCAA
ACCGTGAGCCGACTTCATGTGCAGGCGCAGGGCGAAGAGACGTGCGTACT
CAGCTCCACAAGTATTACAATAGAACTTCCCAGCTGCCTGGCTCTTCGAG
GTGGCCGCACTCTTAATGTTCGGCGTACCAGAGCCGACACTTCCTTTGCT
GCTGATCTCCTTATGGGTCTGCATGTGATTCTTGACGGCGTACATCGAAG
AAAATGGGCGATTGCACACGGCACACCGGTAAGGCTTGGTGTGGGTGTTT
TTGTGGGCGTACAGCTGCACGGAGGTCCGAAAAGTCTTGGGGCACGCATC
GCATGAAAACTGTCGTTCGGAGCTGTGGATGCGCAGGTGGTGGGAGTACA
CTTGGTGCGATTTAAAGCGCTTGTTGCACACCGTGCACACATACGGCCGA
ATGTTGGTGTGGGTACGCAGATGAAGGGTCAGGGAATATGACACCCGAAA
TGTCTTGCCGCAGACCTCGCAGGCGTAAGGCTTTTCTCCGGTGTGGACCC
GTTCGTGCTTGACTTTTTCAAAGGGGCGGGTGAACACCCTCTCGCAGTAC
TGGCAGGGAAACCCGGGTTTCTCCTTATCGAGACTAGTACGCTGGGCTAA
TTTACGGGAGGACTCGGAGTCGCGCGGTTTCTCATGGATTTTTTGGTGCA
TCTGAT

BS04448.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG30443-PA 1689 CG30443-RA 800..1689 906..17 4450 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:09:28
Subject Length Description Subject Range Query Range Score Percent Strand
Opbp-RA 1829 CG30443-RA 898..1787 906..17 4450 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:09:21
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6654563..6655110 618..71 2740 100 Minus
2R 25286936 2R 6654221..6654509 906..618 1445 100 Minus
2R 25286936 2R 6655171..6655225 71..17 275 100 Minus
Blast to na_te.dros performed on 2015-02-03 13:09:25 has no hits.

BS04448.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:48:42 Download gff for BS04448.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30443-PA 800..1689 17..906 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:10:14 Download gff for BS04448.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30443-PA 800..1689 17..906 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:57:24 Download gff for BS04448.3prime
Subject Subject Range Query Range Percent Splice Strand
Opbp-RA 898..1792 11..906 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:47:17 Download gff for BS04448.3prime
Subject Subject Range Query Range Percent Splice Strand
Opbp-RA 898..1792 11..906 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:47:17 Download gff for BS04448.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 6654221..6654509 618..906 100 -> Minus
2R 6654564..6655110 71..617 100 -> Minus
2R 6655172..6655230 11..70 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:57:24 Download gff for BS04448.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2541726..2542014 618..906 100 -> Minus
arm_2R 2542069..2542615 71..617 100 -> Minus
arm_2R 2542677..2542735 11..70 96   Minus

BS04448.5prime Sequence

827 bp (784 high quality bases) assembled on 2005-12-01

> BS04448.5prime
GAAGTTATCAGTCGACATGTCATCGTCCAACCAGGCCGAGGAGACTACCC
CGAACCTCCACGTGGAGGATGGAGACTTATCCGGAGGCGCCTTGCAGCAG
GAATTCCTCTACTGCGAGAGCTGCGGCAATGTATACGAGGACACCGAGTC
TTACGACAGGGCCCACGGTCCGCAGGCCGGCTGCTGCACCGGCGCTAGCG
GGGAATTGGATTTCATCGAGGAGGTCGCCGAAGATTGCATTTCGGAAGAG
GTCGGGGAAGAGGACATTGTCTACGCAGACGTACCCCTCTGGGAGCTGGT
GGAGGAAGTTCCGGCCAACGTGAAGGCGGAGAAGGACCAAAACGAGCCTA
GCAATTCCGATCGCTACTTCTGTTACGACTGCCACAGCATTTTCGAGAAC
CGAAATAAAGCTGAGGAGCACATATGTCCGCGGGCGGAATCCGGCGGGTC
CAGCCAACAAGATGGCGATGCGAAAGCACCCGTCCGGCGAAAGTTGGCCA
GTGTCAGTGCAAGGACGGGTCCGAGAGACGCATCATCCGTTATTAGCTGC
GGAATCTGCAACACCGTTTTTAGCTCGGAGAAGTTTCTCAAATTCCACAT
GCGCATTCATGAGAATCGAGCTCCCAAGAGCATTCAGGACGCCCTTCCTA
TAGGCGCCCATCAGCAGTACAGCGAGCTGGACCAGTTCTACTGCGAAATA
TGCAACAAAAGCTTCGATGAAACCCTCCTGACGGTACACAAACAGATGCA
CCAACAGGAATCTAGTGAGATTATGTGCAGCATTTTGCACCGGAAGTTTG
AGAACGAAGTTACCTATCAGATGCACC

BS04448.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG30443-PA 1689 CG30443-RA 1..769 17..785 3845 100 Plus
CG30443-PA 1689 CG30443-RA 773..811 789..827 195 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:14:18
Subject Length Description Subject Range Query Range Score Percent Strand
Opbp-RA 1829 CG30443-RA 98..909 16..827 4015 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:14:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6653373..6654060 24..711 3440 100 Plus
2R 25286936 2R 6654115..6654232 710..827 545 97.5 Plus
Blast to na_te.dros performed on 2015-02-13 02:14:14 has no hits.

BS04448.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:48:43 Download gff for BS04448.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30443-PA 1..811 17..827 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:10:16 Download gff for BS04448.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30443-PA 1..811 17..827 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:46:09 Download gff for BS04448.5prime
Subject Subject Range Query Range Percent Splice Strand
Opbp-RA 91..909 7..827 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:28:11 Download gff for BS04448.5prime
Subject Subject Range Query Range Percent Splice Strand
Opbp-RA 91..909 7..827 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:28:11 Download gff for BS04448.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 6653365..6654060 15..711 99 -> Plus
2R 6654117..6654232 712..827 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:46:09 Download gff for BS04448.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2540870..2541565 15..711 99 -> Plus
arm_2R 2541622..2541737 712..827 98   Plus

BS04448.complete Sequence

1721 bp assembled on 2008-08-15

GenBank Submission: KX796349

> BS04448.complete
GAAGTTATCAGTCGACATGTCATCGTCCAACCAGGCCGAGGAGACTACCC
CGAACCTCCACGTGGAGGATGGAGACTTATCCGGAGGCGCCTTGCAGCAG
GAATTCCTCTACTGCGAGAGCTGCGGCAATGTATACGAGGACACCGAGTC
TTACGACAGGGCCCACGGTCCGCAGGCCGGCTGCTGCACCGGCGCTAGCG
GGGAATTGGATTTCATCGAGGAGGTCGCCGAAGATTGCATTTCGGAAGAG
GTCGGGGAAGAGGACATTGTCTACGCAGACGTACCCCTCTGGGAGCTGGT
GGAGGAAGTTCCGGCCAACGTGAAGGCGGAGAAGGACCAAAACGAGCCTA
GCAATTCCGATCGCTACTTCTGTTACGACTGCCACAGCATTTTCGAGAAC
CGAAATAAAGCTGAGGAGCACATATGTCCGCGGGCGGAATCCGGCGGGTC
CAGCCAACAAGATGGCGATGCGAAAGCACCCGTCCGGCGAAAGTTGGCCA
GTGTCAGTGCAAGGACGGGTCCGAGAGACGCATCATCCGTTATTAGCTGC
GGAATCTGCAACACCGTTTTTAGCTCGGAGAAGTTTCTCAAATTCCACAT
GCGCATTCATGAGAATCGAGCTCCCAAGAGCATTCAGGACGCCCTTCCTA
TAGGCGCCCATCAGCAGTACAGCGAGCTGGACCAGTTCTACTGCGAAATA
TGCAACAAAAGCTTCGATGAAACCCTCCTGACGGTACACAAACAGATGCA
CCAACAGGAATCTAGTGAGATTATGTGCAGCATTTGCAACCGGAAGTTTG
AGAACGAAGTTACCTATCAGATGCACCAAAAAATCCATGAGAAACCGCGC
GACTCCGAGTCCTCCCGTAAATTAGCCCAGCGTACTAGTCTCGATAAGGA
GAAACCCGGGTTTCCCTGCCAGTACTGCGAGAGGGTGTTCACCCGCCCCT
TTGAAAAAGTCAAGCACGAACGGGTCCACACCGGAGAAAAGCCTTACGCC
TGCGAGGTCTGCGGCAAGACATTTCGGGTGTCATATTCCCTGACCCTTCA
TCTGCGTACCCACACCAACATTCGGCCGTATGTGTGCACGGTGTGCAACA
AGCGCTTTAAATCGCACCAAGTGTACTCCCACCACCTGCGCATCCACAGC
TCCGAACGACAGTTTTCATGCGATGCGTGCCCCAAGACTTTTCGGACCTC
CGTGCAGCTGTACGCCCACAAAAACACCCACACCAAGCCTTACCGGTGTG
CCGTGTGCAATCGCCCATTTTCTTCGATGTACGCCGTCAAGAATCACATG
CAGACCCATAAGGAGATCAGCAGCAAAGGAAGTGTCGGCTCTGGTACGCC
GAACATTAAGAGTGCGGCCACCTCGAAGAGCCAGGCAGCTGGGAAGTTCT
ATTGTAATACTTGTGGAGCTGAGTACGCACGTCTCTTCGCCCTGCGCCTG
CACATGAAGTCGGCTCACGGTTTGGTGGAGGAGCAGGAGAATCCCGCCAC
CTCAACTGATGCTGCACACGTCGCTGAGACCGATGATTCCGAGACTGCGG
TGTTGATAGCGGCAGCCGAGGCAGATGCCGCTTACATAAACGCTGTGGTA
AACGATGTAGACATCGTGGGCACCGTACCCACCTACGAAGAGTGCGTTGT
GTTTGACGTGGATAACTTCCACAGCGAGGAAGTTATTACAGATTGGCTTA
AGTAGAAGCTTTCTAGACCAT

BS04448.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:20:52
Subject Length Description Subject Range Query Range Score Percent Strand
Opbp-RA 1689 CG30443-PA 1..1689 17..1705 8445 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:20:53
Subject Length Description Subject Range Query Range Score Percent Strand
Opbp-RA 1829 CG30443-RA 98..1787 16..1705 8450 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:20:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6653373..6654060 24..711 3440 100 Plus
2R 25286936 2R 6654563..6655110 1104..1651 2740 100 Plus
2R 25286936 2R 6654115..6654509 710..1104 1975 100 Plus
2R 25286936 2R 6655171..6655225 1651..1705 275 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:20:51 has no hits.

BS04448.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:28:45 Download gff for BS04448.complete
Subject Subject Range Query Range Percent Splice Strand
Opbp-RA 75..1771 7..1705 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:05 Download gff for BS04448.complete
Subject Subject Range Query Range Percent Splice Strand
Opbp-RA 99..1787 17..1705 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:08:23 Download gff for BS04448.complete
Subject Subject Range Query Range Percent Splice Strand
Opbp-RA 83..1771 17..1705 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:16:29 Download gff for BS04448.complete
Subject Subject Range Query Range Percent Splice Strand
Opbp-RA 99..1787 17..1705 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:16:29 Download gff for BS04448.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6653367..6654060 17..711 99 -> Plus
2R 6654117..6654509 712..1104 100 -> Plus
2R 6654564..6655110 1105..1651 100 -> Plus
2R 6655172..6655225 1652..1705 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:05 Download gff for BS04448.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2540872..2541565 17..711 99 -> Plus
arm_2R 2541622..2542014 712..1104 100 -> Plus
arm_2R 2542069..2542615 1105..1651 100 -> Plus
arm_2R 2542677..2542730 1652..1705 100   Plus

BS04448.pep Sequence

Translation from 16 to 1704

> BS04448.pep
MSSSNQAEETTPNLHVEDGDLSGGALQQEFLYCESCGNVYEDTESYDRAH
GPQAGCCTGASGELDFIEEVAEDCISEEVGEEDIVYADVPLWELVEEVPA
NVKAEKDQNEPSNSDRYFCYDCHSIFENRNKAEEHICPRAESGGSSQQDG
DAKAPVRRKLASVSARTGPRDASSVISCGICNTVFSSEKFLKFHMRIHEN
RAPKSIQDALPIGAHQQYSELDQFYCEICNKSFDETLLTVHKQMHQQESS
EIMCSICNRKFENEVTYQMHQKIHEKPRDSESSRKLAQRTSLDKEKPGFP
CQYCERVFTRPFEKVKHERVHTGEKPYACEVCGKTFRVSYSLTLHLRTHT
NIRPYVCTVCNKRFKSHQVYSHHLRIHSSERQFSCDACPKTFRTSVQLYA
HKNTHTKPYRCAVCNRPFSSMYAVKNHMQTHKEISSKGSVGSGTPNIKSA
ATSKSQAAGKFYCNTCGAEYARLFALRLHMKSAHGLVEEQENPATSTDAA
HVAETDDSETAVLIAAAEADAAYINAVVNDVDIVGTVPTYEECVVFDVDN
FHSEEVITDWLK*

BS04448.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:32:22
Subject Length Description Subject Range Query Range Score Percent Strand
Opbp-PA 562 CG30443-PA 1..562 1..562 3013 100 Plus
su(Hw)-PC 941 CG8573-PC 160..545 64..431 391 28.3 Plus
su(Hw)-PB 941 CG8573-PB 160..545 64..431 391 28.3 Plus
su(Hw)-PA 941 CG8573-PA 160..545 64..431 391 28.3 Plus
CG12299-PA 736 CG12299-PA 284..585 178..527 365 27.2 Plus
su(Hw)-PC 941 CG8573-PC 321..620 178..433 308 28.4 Plus
su(Hw)-PB 941 CG8573-PB 321..620 178..433 308 28.4 Plus
su(Hw)-PA 941 CG8573-PA 321..620 178..433 308 28.4 Plus
su(Hw)-PC 941 CG8573-PC 287..518 221..482 268 27 Plus
su(Hw)-PB 941 CG8573-PB 287..518 221..482 268 27 Plus
su(Hw)-PA 941 CG8573-PA 287..518 221..482 268 27 Plus