Clone Sequence Records
BS04448.3prime Sequence
906 bp (882 high quality bases) assembled on 2005-12-01
> BS04448.3prime
ATGGTCTAGAAAGCTTCTACTTAAGCCAATCTGTAATAACTTCCTCGCTG
TGGAAGTTATCCACGTCAAACACAACGCACTCTTCGTAGGTGGGTACGGT
GCCCACGATGTCTACATCGTTTACCACAGCGTTTATGTAAGCGGCATCTG
CCTCGGCTGCCGCTATCAACACCGCAGTCTCGGAATCATCGGTCTCAGCG
ACGTGTGCAGCATCAGTTGAGGTGGCGGGATTCTCCTGCTCCTCCACCAA
ACCGTGAGCCGACTTCATGTGCAGGCGCAGGGCGAAGAGACGTGCGTACT
CAGCTCCACAAGTATTACAATAGAACTTCCCAGCTGCCTGGCTCTTCGAG
GTGGCCGCACTCTTAATGTTCGGCGTACCAGAGCCGACACTTCCTTTGCT
GCTGATCTCCTTATGGGTCTGCATGTGATTCTTGACGGCGTACATCGAAG
AAAATGGGCGATTGCACACGGCACACCGGTAAGGCTTGGTGTGGGTGTTT
TTGTGGGCGTACAGCTGCACGGAGGTCCGAAAAGTCTTGGGGCACGCATC
GCATGAAAACTGTCGTTCGGAGCTGTGGATGCGCAGGTGGTGGGAGTACA
CTTGGTGCGATTTAAAGCGCTTGTTGCACACCGTGCACACATACGGCCGA
ATGTTGGTGTGGGTACGCAGATGAAGGGTCAGGGAATATGACACCCGAAA
TGTCTTGCCGCAGACCTCGCAGGCGTAAGGCTTTTCTCCGGTGTGGACCC
GTTCGTGCTTGACTTTTTCAAAGGGGCGGGTGAACACCCTCTCGCAGTAC
TGGCAGGGAAACCCGGGTTTCTCCTTATCGAGACTAGTACGCTGGGCTAA
TTTACGGGAGGACTCGGAGTCGCGCGGTTTCTCATGGATTTTTTGGTGCA
TCTGAT
BS04448.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30443-PA | 1689 | CG30443-RA | 800..1689 | 906..17 | 4450 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:09:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Opbp-RA | 1829 | CG30443-RA | 898..1787 | 906..17 | 4450 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:09:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6654563..6655110 | 618..71 | 2740 | 100 | Minus |
2R | 25286936 | 2R | 6654221..6654509 | 906..618 | 1445 | 100 | Minus |
2R | 25286936 | 2R | 6655171..6655225 | 71..17 | 275 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 13:09:25 has no hits.
BS04448.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:48:42 Download gff for
BS04448.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30443-PA | 800..1689 | 17..906 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:10:14 Download gff for
BS04448.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30443-PA | 800..1689 | 17..906 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:57:24 Download gff for
BS04448.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Opbp-RA | 898..1792 | 11..906 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:47:17 Download gff for
BS04448.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Opbp-RA | 898..1792 | 11..906 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:47:17 Download gff for
BS04448.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6654221..6654509 | 618..906 | 100 | -> | Minus |
2R | 6654564..6655110 | 71..617 | 100 | -> | Minus |
2R | 6655172..6655230 | 11..70 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:57:24 Download gff for
BS04448.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2541726..2542014 | 618..906 | 100 | -> | Minus |
arm_2R | 2542069..2542615 | 71..617 | 100 | -> | Minus |
arm_2R | 2542677..2542735 | 11..70 | 96 | | Minus |
BS04448.5prime Sequence
827 bp (784 high quality bases) assembled on 2005-12-01
> BS04448.5prime
GAAGTTATCAGTCGACATGTCATCGTCCAACCAGGCCGAGGAGACTACCC
CGAACCTCCACGTGGAGGATGGAGACTTATCCGGAGGCGCCTTGCAGCAG
GAATTCCTCTACTGCGAGAGCTGCGGCAATGTATACGAGGACACCGAGTC
TTACGACAGGGCCCACGGTCCGCAGGCCGGCTGCTGCACCGGCGCTAGCG
GGGAATTGGATTTCATCGAGGAGGTCGCCGAAGATTGCATTTCGGAAGAG
GTCGGGGAAGAGGACATTGTCTACGCAGACGTACCCCTCTGGGAGCTGGT
GGAGGAAGTTCCGGCCAACGTGAAGGCGGAGAAGGACCAAAACGAGCCTA
GCAATTCCGATCGCTACTTCTGTTACGACTGCCACAGCATTTTCGAGAAC
CGAAATAAAGCTGAGGAGCACATATGTCCGCGGGCGGAATCCGGCGGGTC
CAGCCAACAAGATGGCGATGCGAAAGCACCCGTCCGGCGAAAGTTGGCCA
GTGTCAGTGCAAGGACGGGTCCGAGAGACGCATCATCCGTTATTAGCTGC
GGAATCTGCAACACCGTTTTTAGCTCGGAGAAGTTTCTCAAATTCCACAT
GCGCATTCATGAGAATCGAGCTCCCAAGAGCATTCAGGACGCCCTTCCTA
TAGGCGCCCATCAGCAGTACAGCGAGCTGGACCAGTTCTACTGCGAAATA
TGCAACAAAAGCTTCGATGAAACCCTCCTGACGGTACACAAACAGATGCA
CCAACAGGAATCTAGTGAGATTATGTGCAGCATTTTGCACCGGAAGTTTG
AGAACGAAGTTACCTATCAGATGCACC
BS04448.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30443-PA | 1689 | CG30443-RA | 1..769 | 17..785 | 3845 | 100 | Plus |
CG30443-PA | 1689 | CG30443-RA | 773..811 | 789..827 | 195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:14:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Opbp-RA | 1829 | CG30443-RA | 98..909 | 16..827 | 4015 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:14:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6653373..6654060 | 24..711 | 3440 | 100 | Plus |
2R | 25286936 | 2R | 6654115..6654232 | 710..827 | 545 | 97.5 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:14:14 has no hits.
BS04448.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:48:43 Download gff for
BS04448.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30443-PA | 1..811 | 17..827 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:10:16 Download gff for
BS04448.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30443-PA | 1..811 | 17..827 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:46:09 Download gff for
BS04448.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Opbp-RA | 91..909 | 7..827 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:28:11 Download gff for
BS04448.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Opbp-RA | 91..909 | 7..827 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:28:11 Download gff for
BS04448.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6653365..6654060 | 15..711 | 99 | -> | Plus |
2R | 6654117..6654232 | 712..827 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:46:09 Download gff for
BS04448.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2540870..2541565 | 15..711 | 99 | -> | Plus |
arm_2R | 2541622..2541737 | 712..827 | 98 | | Plus |
BS04448.complete Sequence
1721 bp assembled on 2008-08-15
GenBank Submission: KX796349
> BS04448.complete
GAAGTTATCAGTCGACATGTCATCGTCCAACCAGGCCGAGGAGACTACCC
CGAACCTCCACGTGGAGGATGGAGACTTATCCGGAGGCGCCTTGCAGCAG
GAATTCCTCTACTGCGAGAGCTGCGGCAATGTATACGAGGACACCGAGTC
TTACGACAGGGCCCACGGTCCGCAGGCCGGCTGCTGCACCGGCGCTAGCG
GGGAATTGGATTTCATCGAGGAGGTCGCCGAAGATTGCATTTCGGAAGAG
GTCGGGGAAGAGGACATTGTCTACGCAGACGTACCCCTCTGGGAGCTGGT
GGAGGAAGTTCCGGCCAACGTGAAGGCGGAGAAGGACCAAAACGAGCCTA
GCAATTCCGATCGCTACTTCTGTTACGACTGCCACAGCATTTTCGAGAAC
CGAAATAAAGCTGAGGAGCACATATGTCCGCGGGCGGAATCCGGCGGGTC
CAGCCAACAAGATGGCGATGCGAAAGCACCCGTCCGGCGAAAGTTGGCCA
GTGTCAGTGCAAGGACGGGTCCGAGAGACGCATCATCCGTTATTAGCTGC
GGAATCTGCAACACCGTTTTTAGCTCGGAGAAGTTTCTCAAATTCCACAT
GCGCATTCATGAGAATCGAGCTCCCAAGAGCATTCAGGACGCCCTTCCTA
TAGGCGCCCATCAGCAGTACAGCGAGCTGGACCAGTTCTACTGCGAAATA
TGCAACAAAAGCTTCGATGAAACCCTCCTGACGGTACACAAACAGATGCA
CCAACAGGAATCTAGTGAGATTATGTGCAGCATTTGCAACCGGAAGTTTG
AGAACGAAGTTACCTATCAGATGCACCAAAAAATCCATGAGAAACCGCGC
GACTCCGAGTCCTCCCGTAAATTAGCCCAGCGTACTAGTCTCGATAAGGA
GAAACCCGGGTTTCCCTGCCAGTACTGCGAGAGGGTGTTCACCCGCCCCT
TTGAAAAAGTCAAGCACGAACGGGTCCACACCGGAGAAAAGCCTTACGCC
TGCGAGGTCTGCGGCAAGACATTTCGGGTGTCATATTCCCTGACCCTTCA
TCTGCGTACCCACACCAACATTCGGCCGTATGTGTGCACGGTGTGCAACA
AGCGCTTTAAATCGCACCAAGTGTACTCCCACCACCTGCGCATCCACAGC
TCCGAACGACAGTTTTCATGCGATGCGTGCCCCAAGACTTTTCGGACCTC
CGTGCAGCTGTACGCCCACAAAAACACCCACACCAAGCCTTACCGGTGTG
CCGTGTGCAATCGCCCATTTTCTTCGATGTACGCCGTCAAGAATCACATG
CAGACCCATAAGGAGATCAGCAGCAAAGGAAGTGTCGGCTCTGGTACGCC
GAACATTAAGAGTGCGGCCACCTCGAAGAGCCAGGCAGCTGGGAAGTTCT
ATTGTAATACTTGTGGAGCTGAGTACGCACGTCTCTTCGCCCTGCGCCTG
CACATGAAGTCGGCTCACGGTTTGGTGGAGGAGCAGGAGAATCCCGCCAC
CTCAACTGATGCTGCACACGTCGCTGAGACCGATGATTCCGAGACTGCGG
TGTTGATAGCGGCAGCCGAGGCAGATGCCGCTTACATAAACGCTGTGGTA
AACGATGTAGACATCGTGGGCACCGTACCCACCTACGAAGAGTGCGTTGT
GTTTGACGTGGATAACTTCCACAGCGAGGAAGTTATTACAGATTGGCTTA
AGTAGAAGCTTTCTAGACCAT
BS04448.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:20:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Opbp-RA | 1689 | CG30443-PA | 1..1689 | 17..1705 | 8445 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:20:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Opbp-RA | 1829 | CG30443-RA | 98..1787 | 16..1705 | 8450 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:20:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6653373..6654060 | 24..711 | 3440 | 100 | Plus |
2R | 25286936 | 2R | 6654563..6655110 | 1104..1651 | 2740 | 100 | Plus |
2R | 25286936 | 2R | 6654115..6654509 | 710..1104 | 1975 | 100 | Plus |
2R | 25286936 | 2R | 6655171..6655225 | 1651..1705 | 275 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:20:51 has no hits.
BS04448.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:28:45 Download gff for
BS04448.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Opbp-RA | 75..1771 | 7..1705 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:05 Download gff for
BS04448.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Opbp-RA | 99..1787 | 17..1705 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:08:23 Download gff for
BS04448.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Opbp-RA | 83..1771 | 17..1705 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:16:29 Download gff for
BS04448.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Opbp-RA | 99..1787 | 17..1705 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:16:29 Download gff for
BS04448.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6653367..6654060 | 17..711 | 99 | -> | Plus |
2R | 6654117..6654509 | 712..1104 | 100 | -> | Plus |
2R | 6654564..6655110 | 1105..1651 | 100 | -> | Plus |
2R | 6655172..6655225 | 1652..1705 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:05 Download gff for
BS04448.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2540872..2541565 | 17..711 | 99 | -> | Plus |
arm_2R | 2541622..2542014 | 712..1104 | 100 | -> | Plus |
arm_2R | 2542069..2542615 | 1105..1651 | 100 | -> | Plus |
arm_2R | 2542677..2542730 | 1652..1705 | 100 | | Plus |
BS04448.pep Sequence
Translation from 16 to 1704
> BS04448.pep
MSSSNQAEETTPNLHVEDGDLSGGALQQEFLYCESCGNVYEDTESYDRAH
GPQAGCCTGASGELDFIEEVAEDCISEEVGEEDIVYADVPLWELVEEVPA
NVKAEKDQNEPSNSDRYFCYDCHSIFENRNKAEEHICPRAESGGSSQQDG
DAKAPVRRKLASVSARTGPRDASSVISCGICNTVFSSEKFLKFHMRIHEN
RAPKSIQDALPIGAHQQYSELDQFYCEICNKSFDETLLTVHKQMHQQESS
EIMCSICNRKFENEVTYQMHQKIHEKPRDSESSRKLAQRTSLDKEKPGFP
CQYCERVFTRPFEKVKHERVHTGEKPYACEVCGKTFRVSYSLTLHLRTHT
NIRPYVCTVCNKRFKSHQVYSHHLRIHSSERQFSCDACPKTFRTSVQLYA
HKNTHTKPYRCAVCNRPFSSMYAVKNHMQTHKEISSKGSVGSGTPNIKSA
ATSKSQAAGKFYCNTCGAEYARLFALRLHMKSAHGLVEEQENPATSTDAA
HVAETDDSETAVLIAAAEADAAYINAVVNDVDIVGTVPTYEECVVFDVDN
FHSEEVITDWLK*
BS04448.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:32:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Opbp-PA | 562 | CG30443-PA | 1..562 | 1..562 | 3013 | 100 | Plus |
su(Hw)-PC | 941 | CG8573-PC | 160..545 | 64..431 | 391 | 28.3 | Plus |
su(Hw)-PB | 941 | CG8573-PB | 160..545 | 64..431 | 391 | 28.3 | Plus |
su(Hw)-PA | 941 | CG8573-PA | 160..545 | 64..431 | 391 | 28.3 | Plus |
CG12299-PA | 736 | CG12299-PA | 284..585 | 178..527 | 365 | 27.2 | Plus |
su(Hw)-PC | 941 | CG8573-PC | 321..620 | 178..433 | 308 | 28.4 | Plus |
su(Hw)-PB | 941 | CG8573-PB | 321..620 | 178..433 | 308 | 28.4 | Plus |
su(Hw)-PA | 941 | CG8573-PA | 321..620 | 178..433 | 308 | 28.4 | Plus |
su(Hw)-PC | 941 | CG8573-PC | 287..518 | 221..482 | 268 | 27 | Plus |
su(Hw)-PB | 941 | CG8573-PB | 287..518 | 221..482 | 268 | 27 | Plus |
su(Hw)-PA | 941 | CG8573-PA | 287..518 | 221..482 | 268 | 27 | Plus |