Clone Sequence Records
BS04449.3prime Sequence
534 bp (533 high quality bases) assembled on 2005-12-01
> BS04449.3prime
ATGGTCTAGAAAGCTTTCAGGGCGTCTCCAGCACATGATTCAAATAGGCA
ATGTAGCAGATGGCCAGCTTGAGGATCTCGATCTTGGAAAGCTTCTTGTC
CGGCGGCAATGTGGGCAACAGCTTGCGCAGCTCGGCAAAGGAAACATTGA
ATGCCTCCACCCGTATACGCTCCCGCGTCGCATGTGCCGTTCGGTATTTG
AGTGTCGCTCGCCTGCGACGACGCCGCTCCTCCCGCGATAGACCCACCAA
TTCCGATGGATCCAAATGGGCAATGGGCGTGGTCCGGCGACGTGGCGCCG
GCGTGGGCGGCGGTGGCGGTGCCGGTTGTGCGGCCGTTTCGCACGCCATT
CGCGCCTGAAAACGCTTATCGATATCCAGCGTCGTACTGGCCGCATAGTC
CTCGTTGACCAGATGCGGATTATTTGGCCCAATCATCTCATCATCGTCGA
CCAGATAGTAGCGACTAAGCGAAATGCTTTGCGGCGGACCCGCCGCCATA
TGGCTCATATCGTAGACCATGTCGACTGATAACT
BS04449.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3052-PA | 504 | HLH4C-RA | 1..504 | 520..17 | 2520 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:40:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HLH4C-RB | 1424 | CG3052-RB | 184..687 | 520..17 | 2520 | 100 | Minus |
HLH4C-RA | 1424 | CG3052-RA | 184..687 | 520..17 | 2520 | 100 | Minus |
HLH3B-RA | 1428 | CG2655-RA | 616..685 | 141..72 | 230 | 88.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:40:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 4645864..4646367 | 17..520 | 2520 | 100 | Plus |
X | 23542271 | X | 2680942..2681011 | 72..141 | 230 | 88.6 | Plus |
Blast to na_te.dros performed on 2015-02-11 22:40:16 has no hits.
BS04449.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:48:44 Download gff for
BS04449.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HLH4C-PA | 1..504 | 17..520 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:10:18 Download gff for
BS04449.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3052-PA | 1..504 | 17..520 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 07:47:57 Download gff for
BS04449.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HLH4C-RA | 178..687 | 17..528 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:21:06 Download gff for
BS04449.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HLH4C-RA | 178..687 | 17..528 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:21:06 Download gff for
BS04449.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 4645864..4646373 | 17..528 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 07:47:57 Download gff for
BS04449.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 4539897..4540406 | 17..528 | 99 | | Plus |
BS04449.5prime Sequence
534 bp (533 high quality bases) assembled on 2005-12-01
> BS04449.5prime
GAAGTTATCAGTCGACATGGTCTACGATATGAGCCATATGGCGGCGGGTC
CGCCGCAAAGCATTTCGCTTAGTCGCTACTATCTGGTCGACGATGATGAG
ATGATTGGGCCAAATAATCCGCATCTGGTCAACGAGGACTATGCGGCCAG
TACGACGCTGGATATCGATAAGCGTTTTCAGGCGCGAATGGCGTGCGAAA
CGGCCGCACAACCGGCACCGCCACCGCCGCCCACGCCGGCGCCACGTCGC
CGGACCACGCCCATTGCCCATTTGGATCCATCGGAATTGGTGGGTCTATC
GCGGGAGGAGCGGCGTCGTCGCAGGCGAGCGACACTCAAATACCGAACGG
CACATGCGACGCGGGAGCGTATACGGGTGGAGGCATTCAATGTTTCCTTT
GCCGAGCTGCGCAAGCTGTTGCCCACATTGCCGCCGGACAAGAAGCTTTC
CAAGATCGAGATCCTCAAGCTGGCCATCTGCTACATTGCCTATTTGAATC
ATGTGCTGGAGACGCCCTGAAAGCTTTCTAGACC
BS04449.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3052-PA | 504 | HLH4C-RA | 1..504 | 17..520 | 2520 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:22:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HLH4C-RB | 1424 | CG3052-RB | 184..687 | 17..520 | 2520 | 100 | Plus |
HLH4C-RA | 1424 | CG3052-RA | 184..687 | 17..520 | 2520 | 100 | Plus |
HLH3B-RA | 1428 | CG2655-RA | 616..685 | 396..465 | 230 | 88.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:22:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 4645864..4646367 | 520..17 | 2520 | 100 | Minus |
X | 23542271 | X | 2680942..2681011 | 465..396 | 230 | 88.6 | Minus |
Blast to na_te.dros performed on 2015-02-02 12:22:24 has no hits.
BS04449.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:48:45 Download gff for
BS04449.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HLH4C-PA | 1..504 | 17..520 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:10:19 Download gff for
BS04449.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3052-PA | 1..504 | 17..520 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:48:47 Download gff for
BS04449.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HLH4C-RA | 178..687 | 9..520 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:55:14 Download gff for
BS04449.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HLH4C-RA | 178..687 | 9..520 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:55:14 Download gff for
BS04449.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 4645864..4646373 | 9..520 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:48:47 Download gff for
BS04449.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 4539897..4540406 | 9..520 | 99 | | Minus |
BS04449.complete Sequence
536 bp (536 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ634943
> BS04449.complete
GAAGTTATCAGTCGACATGGTCTACGATATGAGCCATATGGCGGCGGGTC
CGCCGCAAAGCATTTCGCTTAGTCGCTACTATCTGGTCGACGATGATGAG
ATGATTGGGCCAAATAATCCGCATCTGGTCAACGAGGACTATGCGGCCAG
TACGACGCTGGATATCGATAAGCGTTTTCAGGCGCGAATGGCGTGCGAAA
CGGCCGCACAACCGGCACCGCCACCGCCGCCCACGCCGGCGCCACGTCGC
CGGACCACGCCCATTGCCCATTTGGATCCATCGGAATTGGTGGGTCTATC
GCGGGAGGAGCGGCGTCGTCGCAGGCGAGCGACACTCAAATACCGAACGG
CACATGCGACGCGGGAGCGTATACGGGTGGAGGCATTCAATGTTTCCTTT
GCCGAGCTGCGCAAGCTGTTGCCCACATTGCCGCCGGACAAGAAGCTTTC
CAAGATCGAGATCCTCAAGCTGGCCATCTGCTACATTGCCTATTTGAATC
ATGTGCTGGAGACGCCCTGAAAGCTTTCTAGACCAT
BS04449.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:52:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HLH4C-RB | 576 | CG3052-PB | 1..504 | 17..520 | 2520 | 100 | Plus |
HLH4C-RA | 504 | CG3052-PA | 1..504 | 17..520 | 2520 | 100 | Plus |
HLH3B-RA | 1131 | CG2655-PA | 551..620 | 396..465 | 230 | 88.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:52:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HLH4C-RB | 1424 | CG3052-RB | 184..687 | 17..520 | 2520 | 100 | Plus |
HLH4C-RA | 1424 | CG3052-RA | 184..687 | 17..520 | 2520 | 100 | Plus |
HLH3B-RA | 1428 | CG2655-RA | 616..685 | 396..465 | 230 | 88.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:52:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 4645864..4646367 | 520..17 | 2520 | 100 | Minus |
X | 23542271 | X | 2680942..2681011 | 465..396 | 230 | 88.6 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:52:38 has no hits.
BS04449.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:32:25 Download gff for
BS04449.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HLH4C-RA | 1..504 | 17..520 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:16:35 Download gff for
BS04449.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HLH4C-RA | 178..687 | 9..520 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:34:14 Download gff for
BS04449.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HLH4C-RA | 184..686 | 17..519 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:32:25 Download gff for
BS04449.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HLH4C-RA | 178..687 | 9..520 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:54:41 Download gff for
BS04449.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HLH4C-RA | 184..686 | 17..519 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:54:41 Download gff for
BS04449.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 4645865..4646367 | 17..519 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:34:14 Download gff for
BS04449.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 4539898..4540400 | 17..519 | 100 | | Minus |
BS04449.pep Sequence
Translation from 16 to 519
> BS04449.pep
MVYDMSHMAAGPPQSISLSRYYLVDDDEMIGPNNPHLVNEDYAASTTLDI
DKRFQARMACETAAQPAPPPPPTPAPRRRTTPIAHLDPSELVGLSREERR
RRRRATLKYRTAHATRERIRVEAFNVSFAELRKLLPTLPPDKKLSKIEIL
KLAICYIAYLNHVLETP*
BS04449.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:30:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HLH4C-PA | 167 | CG3052-PA | 1..167 | 1..167 | 868 | 100 | Plus |
HLH4C-PB | 191 | CG3052-PB | 1..167 | 1..167 | 868 | 100 | Plus |
Fer3-PA | 195 | CG6913-PA | 24..142 | 65..164 | 142 | 35.3 | Plus |