Clone BS04449 Report

Search the DGRC for BS04449

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:44
Well:49
Vector:pDNR-Dual
Associated Gene/TranscriptHLH4C-RA
Protein status:BS04449.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04449.3prime Sequence

534 bp (533 high quality bases) assembled on 2005-12-01

> BS04449.3prime
ATGGTCTAGAAAGCTTTCAGGGCGTCTCCAGCACATGATTCAAATAGGCA
ATGTAGCAGATGGCCAGCTTGAGGATCTCGATCTTGGAAAGCTTCTTGTC
CGGCGGCAATGTGGGCAACAGCTTGCGCAGCTCGGCAAAGGAAACATTGA
ATGCCTCCACCCGTATACGCTCCCGCGTCGCATGTGCCGTTCGGTATTTG
AGTGTCGCTCGCCTGCGACGACGCCGCTCCTCCCGCGATAGACCCACCAA
TTCCGATGGATCCAAATGGGCAATGGGCGTGGTCCGGCGACGTGGCGCCG
GCGTGGGCGGCGGTGGCGGTGCCGGTTGTGCGGCCGTTTCGCACGCCATT
CGCGCCTGAAAACGCTTATCGATATCCAGCGTCGTACTGGCCGCATAGTC
CTCGTTGACCAGATGCGGATTATTTGGCCCAATCATCTCATCATCGTCGA
CCAGATAGTAGCGACTAAGCGAAATGCTTTGCGGCGGACCCGCCGCCATA
TGGCTCATATCGTAGACCATGTCGACTGATAACT

BS04449.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG3052-PA 504 HLH4C-RA 1..504 520..17 2520 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:40:18
Subject Length Description Subject Range Query Range Score Percent Strand
HLH4C-RB 1424 CG3052-RB 184..687 520..17 2520 100 Minus
HLH4C-RA 1424 CG3052-RA 184..687 520..17 2520 100 Minus
HLH3B-RA 1428 CG2655-RA 616..685 141..72 230 88.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:40:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 4645864..4646367 17..520 2520 100 Plus
X 23542271 X 2680942..2681011 72..141 230 88.6 Plus
Blast to na_te.dros performed on 2015-02-11 22:40:16 has no hits.

BS04449.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:48:44 Download gff for BS04449.3prime
Subject Subject Range Query Range Percent Splice Strand
HLH4C-PA 1..504 17..520 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:10:18 Download gff for BS04449.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3052-PA 1..504 17..520 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 07:47:57 Download gff for BS04449.3prime
Subject Subject Range Query Range Percent Splice Strand
HLH4C-RA 178..687 17..528 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:21:06 Download gff for BS04449.3prime
Subject Subject Range Query Range Percent Splice Strand
HLH4C-RA 178..687 17..528 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:21:06 Download gff for BS04449.3prime
Subject Subject Range Query Range Percent Splice Strand
X 4645864..4646373 17..528 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 07:47:57 Download gff for BS04449.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 4539897..4540406 17..528 99   Plus

BS04449.5prime Sequence

534 bp (533 high quality bases) assembled on 2005-12-01

> BS04449.5prime
GAAGTTATCAGTCGACATGGTCTACGATATGAGCCATATGGCGGCGGGTC
CGCCGCAAAGCATTTCGCTTAGTCGCTACTATCTGGTCGACGATGATGAG
ATGATTGGGCCAAATAATCCGCATCTGGTCAACGAGGACTATGCGGCCAG
TACGACGCTGGATATCGATAAGCGTTTTCAGGCGCGAATGGCGTGCGAAA
CGGCCGCACAACCGGCACCGCCACCGCCGCCCACGCCGGCGCCACGTCGC
CGGACCACGCCCATTGCCCATTTGGATCCATCGGAATTGGTGGGTCTATC
GCGGGAGGAGCGGCGTCGTCGCAGGCGAGCGACACTCAAATACCGAACGG
CACATGCGACGCGGGAGCGTATACGGGTGGAGGCATTCAATGTTTCCTTT
GCCGAGCTGCGCAAGCTGTTGCCCACATTGCCGCCGGACAAGAAGCTTTC
CAAGATCGAGATCCTCAAGCTGGCCATCTGCTACATTGCCTATTTGAATC
ATGTGCTGGAGACGCCCTGAAAGCTTTCTAGACC

BS04449.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG3052-PA 504 HLH4C-RA 1..504 17..520 2520 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:22:27
Subject Length Description Subject Range Query Range Score Percent Strand
HLH4C-RB 1424 CG3052-RB 184..687 17..520 2520 100 Plus
HLH4C-RA 1424 CG3052-RA 184..687 17..520 2520 100 Plus
HLH3B-RA 1428 CG2655-RA 616..685 396..465 230 88.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:22:21
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 4645864..4646367 520..17 2520 100 Minus
X 23542271 X 2680942..2681011 465..396 230 88.6 Minus
Blast to na_te.dros performed on 2015-02-02 12:22:24 has no hits.

BS04449.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:48:45 Download gff for BS04449.5prime
Subject Subject Range Query Range Percent Splice Strand
HLH4C-PA 1..504 17..520 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:10:19 Download gff for BS04449.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3052-PA 1..504 17..520 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:48:47 Download gff for BS04449.5prime
Subject Subject Range Query Range Percent Splice Strand
HLH4C-RA 178..687 9..520 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:55:14 Download gff for BS04449.5prime
Subject Subject Range Query Range Percent Splice Strand
HLH4C-RA 178..687 9..520 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:55:14 Download gff for BS04449.5prime
Subject Subject Range Query Range Percent Splice Strand
X 4645864..4646373 9..520 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:48:47 Download gff for BS04449.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 4539897..4540406 9..520 99   Minus

BS04449.complete Sequence

536 bp (536 high quality bases) assembled on 2005-09-13

GenBank Submission: FJ634943

> BS04449.complete
GAAGTTATCAGTCGACATGGTCTACGATATGAGCCATATGGCGGCGGGTC
CGCCGCAAAGCATTTCGCTTAGTCGCTACTATCTGGTCGACGATGATGAG
ATGATTGGGCCAAATAATCCGCATCTGGTCAACGAGGACTATGCGGCCAG
TACGACGCTGGATATCGATAAGCGTTTTCAGGCGCGAATGGCGTGCGAAA
CGGCCGCACAACCGGCACCGCCACCGCCGCCCACGCCGGCGCCACGTCGC
CGGACCACGCCCATTGCCCATTTGGATCCATCGGAATTGGTGGGTCTATC
GCGGGAGGAGCGGCGTCGTCGCAGGCGAGCGACACTCAAATACCGAACGG
CACATGCGACGCGGGAGCGTATACGGGTGGAGGCATTCAATGTTTCCTTT
GCCGAGCTGCGCAAGCTGTTGCCCACATTGCCGCCGGACAAGAAGCTTTC
CAAGATCGAGATCCTCAAGCTGGCCATCTGCTACATTGCCTATTTGAATC
ATGTGCTGGAGACGCCCTGAAAGCTTTCTAGACCAT

BS04449.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:52:39
Subject Length Description Subject Range Query Range Score Percent Strand
HLH4C-RB 576 CG3052-PB 1..504 17..520 2520 100 Plus
HLH4C-RA 504 CG3052-PA 1..504 17..520 2520 100 Plus
HLH3B-RA 1131 CG2655-PA 551..620 396..465 230 88.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:52:40
Subject Length Description Subject Range Query Range Score Percent Strand
HLH4C-RB 1424 CG3052-RB 184..687 17..520 2520 100 Plus
HLH4C-RA 1424 CG3052-RA 184..687 17..520 2520 100 Plus
HLH3B-RA 1428 CG2655-RA 616..685 396..465 230 88.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:52:37
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 4645864..4646367 520..17 2520 100 Minus
X 23542271 X 2680942..2681011 465..396 230 88.6 Minus
Blast to na_te.dros performed on 2014-11-27 14:52:38 has no hits.

BS04449.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:32:25 Download gff for BS04449.complete
Subject Subject Range Query Range Percent Splice Strand
HLH4C-RA 1..504 17..520 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:16:35 Download gff for BS04449.complete
Subject Subject Range Query Range Percent Splice Strand
HLH4C-RA 178..687 9..520 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:34:14 Download gff for BS04449.complete
Subject Subject Range Query Range Percent Splice Strand
HLH4C-RA 184..686 17..519 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:32:25 Download gff for BS04449.complete
Subject Subject Range Query Range Percent Splice Strand
HLH4C-RA 178..687 9..520 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:54:41 Download gff for BS04449.complete
Subject Subject Range Query Range Percent Splice Strand
HLH4C-RA 184..686 17..519 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:54:41 Download gff for BS04449.complete
Subject Subject Range Query Range Percent Splice Strand
X 4645865..4646367 17..519 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:34:14 Download gff for BS04449.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 4539898..4540400 17..519 100   Minus

BS04449.pep Sequence

Translation from 16 to 519

> BS04449.pep
MVYDMSHMAAGPPQSISLSRYYLVDDDEMIGPNNPHLVNEDYAASTTLDI
DKRFQARMACETAAQPAPPPPPTPAPRRRTTPIAHLDPSELVGLSREERR
RRRRATLKYRTAHATRERIRVEAFNVSFAELRKLLPTLPPDKKLSKIEIL
KLAICYIAYLNHVLETP*

BS04449.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:30:30
Subject Length Description Subject Range Query Range Score Percent Strand
HLH4C-PA 167 CG3052-PA 1..167 1..167 868 100 Plus
HLH4C-PB 191 CG3052-PB 1..167 1..167 868 100 Plus
Fer3-PA 195 CG6913-PA 24..142 65..164 142 35.3 Plus