Clone Sequence Records
BS04452.3prime Sequence
967 bp (829 high quality bases) assembled on 2005-12-01
> BS04452.3prime
ATGGTCTAGAAAGCTTTCAGCCAGCCTTGTGAGTCTTCAAGTGGTGCTGG
TATTCTTTGTAGCTGTTGCTCTTAAATATTTCACCGGCTTCTTCATCGGA
GCACTTAGCGCAGTGGTAAATGAACATGCCGGGATGCTTTCCCGTCTTGA
TGATGTGCTTACGTAGGTTATCTATGGTGCTGCACTGGAAGTCGCAGTGG
GGGCATTGGTGGGGCTTCTGGCCCGAGTGGCGCAACGAGTGCCGACGGAG
GTGACCCTTGATGCGGGCTCTGAAATCGCATTGATCGCACGAAAACCACT
CCTCACCATTCTTCTCCGTGGAATGAGCCGACTTGAGGTGCCTTTTTAGG
TGCAGCTCGCTCTTTCCCACATAGCTGCAGTTAATCCGCGCACATTTGTG
ATTTTCCTGGGAGTGGGAGACCAAGTGGGTTTTCAGGCTTTCCGGGGTTC
GCCCTGCATATGAGCAGTCCGCAAAATGGCAGAGATAATTGCGCTCAACT
GCCTTCGAGTGGCTAATCTCATGAAGTTTAAGGGAATACTTTTTGGCCAG
TAATTTTCCACATGTCCCACACTGATATTTGGGTTTTGATTGTTCAACAT
CTTTCGCAGCATATTTTTTCTTCTCCTTGTCGCCTACTTTGGCATGCTTT
GTGATTACGTGGTTCTTAAGGTTGTGTCTTCTAGCAAATTTCTGAAGGCA
CTCAGTGCATTCAAAAATTTTTTCATTTGTATGGTTCCTTAGGTGAGCCC
TAAGCGAGTGCTTTTTGAAATTCTTCGGGCACAAAGGGCACTGAAGAACC
TCGTTTTTCCCTATTGTTCCGGATCGTGTGTGAAAAATGCGGTGATAAAC
TAGATCGGACTCATATTGAGATTGGAAGCGACATTGATCGCAGGAGTACA
TTGATTTCTTTTGAGCTTGTGATAGATCAGCGGGGGGTTGATGTGCTGGC
CAGGGGTTGACAGCTGC
BS04452.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31612-PA | 2964 | CG31612-RA | 2045..2964 | 936..17 | 4600 | 100 | Minus |
CG31612-PA | 2964 | CG31612-RA | 2015..2049 | 967..933 | 175 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:31:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31612-RB | 3433 | CG31612-RB | 2223..3172 | 967..17 | 4730 | 99.9 | Minus |
CG31612-RA | 3285 | CG31612-RA | 2075..3024 | 967..17 | 4730 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:31:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 21772998..21773426 | 538..967 | 2100 | 99.8 | Plus |
2L | 23513712 | 2L | 21762575..21762901 | 17..343 | 1635 | 100 | Plus |
2L | 23513712 | 2L | 21765962..21766160 | 341..539 | 995 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:31:38 has no hits.
BS04452.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:48:48 Download gff for
BS04452.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31612-PA | 2015..2964 | 17..967 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:10:23 Download gff for
BS04452.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31612-PA | 2015..2964 | 17..967 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:01:26 Download gff for
BS04452.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31612-RA | 2075..3024 | 17..967 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:05:07 Download gff for
BS04452.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31612-RA | 2075..3024 | 17..967 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:05:07 Download gff for
BS04452.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 21762575..21762899 | 17..341 | 100 | <- | Plus |
2L | 21765963..21766160 | 342..539 | 100 | <- | Plus |
2L | 21773000..21773426 | 540..967 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:01:26 Download gff for
BS04452.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 21762575..21762899 | 17..341 | 100 | <- | Plus |
arm_2L | 21765963..21766160 | 342..539 | 100 | <- | Plus |
arm_2L | 21773000..21773426 | 540..967 | 99 | | Plus |
BS04452.5prime Sequence
881 bp (767 high quality bases) assembled on 2005-12-01
> BS04452.5prime
GAAGTTATCAGTCGACATGAACGAAGACCATCTCGAGGACACTCATCTGT
GCATCAGGTGCAACGCAACTATACTTGGACTCTCAAAATATATTGATCAT
CGAAAACGGAACTGTCTTATAACAGGAAAGCAAAATGCTTCGCCAAAAAC
CGATGGACGAACAAGAATCTCTGCTGACACTCATGTTTCGGCGACGCTTA
TCAGTAGCAGTAATTTGGATCATTCATATGATGGCTTCCATTTCACGGAA
CCGGAGGCTCCAAGTAGTTACCTTCGCAAAACTGCCGCCAGTCATGGCGG
TAAGACCTCAAAGTCCTTGACTGAAGCCTATGATCTCCCATACGAACTTG
GAGCCGATCTCTTCTTTTCGTCCCTACAACTGCAGAGCGTCGCCACGGGT
GGGAAAATAGGATCGGTACCCCGTCAAGAGCGAAGCAAAGATGAGTCCTG
GTCCGCGCCAGCTGGCGATCCCCTACTGAAAGCAGTGAGGGAGAACGATG
AAACTGTCTTTAAGCCGCTTCACTTTGACCATGAGTACCCAGAAGCGAGT
GATGAGGAGGATGATGAGGATGAACACGAGGAATTTGATGCGGAAGAAGA
TGAGGAAGAGTACGATGCAAGGCGTCACTCACCGCCCATTGTGCCCGCCA
GTCACACAGGTGGTAAGTGGAAACCAGAACAGCGGCCGCAGCTACGACAT
CCGCATATAGAACGCCTCTCGCCAAGTTGGGATGAGCCCCCCGAAGAAAA
CTACACTCACCCTCCAGCGGAACATACCAAGGGCAAATGGGTTCCGGGTA
GCAAGCAGTTGGAGTACCGCGAAAATTTGGATCTTACCAAGCTGGACCAA
CCGGGAGCTAGTTATTGGTGCAACATTTGCT
BS04452.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31612-PA | 2964 | CG31612-RA | 1..865 | 17..881 | 4300 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:25:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31612-RB | 3433 | CG31612-RB | 208..1073 | 16..881 | 4315 | 99.9 | Plus |
CG31612-RA | 3285 | CG31612-RA | 60..925 | 16..881 | 4315 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:25:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 21774576..21775441 | 881..16 | 4315 | 99.9 | Minus |
Blast to na_te.dros performed 2015-02-02 12:25:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cr1a | 4470 | Cr1a DMCR1A 4470bp | 1424..1459 | 619..584 | 108 | 77.8 | Minus |
BS04452.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:48:49 Download gff for
BS04452.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31612-PA | 1..865 | 17..881 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:10:24 Download gff for
BS04452.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31612-PA | 1..865 | 17..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:49:29 Download gff for
BS04452.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31612-RA | 60..925 | 16..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:55:51 Download gff for
BS04452.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31612-RA | 60..925 | 16..881 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:55:51 Download gff for
BS04452.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 21774576..21775449 | 9..881 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:49:29 Download gff for
BS04452.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 21774576..21775449 | 9..881 | 99 | | Minus |
BS04452.complete Sequence
2996 bp assembled on 2008-08-15
GenBank Submission: KX798363
> BS04452.complete
GAAGTTATCAGTCGACATGAACGAAGACCATCTCGAGGACACTCATCTGT
GCATCAGGTGCAACGCAACTATACTTGGACTCTCAAAATATATTGATCAT
CGAAAACGGAACTGTCTTATAACAGGAAAGCAAAATGCTTCGCCAAAAAC
CGATGGACGAACAAGAATCTCTGCTGACACTCATGTTTCGGCGACGCTTA
TCAGTAGCAGTAATTTGGATCATTCATATGATGGCTTCCATTTCACGGAA
CCGGAGGCTCCAAGTAGTTACCTTCGCAAAACTGCCGCCAGTCATGGCGG
TAAGACCTCAAAGTCCTTGACTGAAGCCTATGATCTCCCATACGAACTTG
GAGCCGATCTCTTCTTTTCGTCCCTACAACTGCAGAGCGTCGCCACGGGT
GGGAAAATAGGATCGGTACCCCGTCAAGAGCGAAGCAAAGATGAGTCCTG
GTCCGCGCCAGCTGGCGATCCCCTACTGAAAGCAGTGAGGGAGAACGATG
AAACTGTCTTTAAGCCGCTTCACTTTGACCATGAGTACCCAGAAGCGAGT
GATGAGGAGGATGATGAGGATGAACACGAGGAATTTGATGCGGAAGAAGA
TGAGGAAGAGTACGATGCAAGGCGTCACTCACCGCCCATTGTGCCCGCCA
GTCACACAGGTGGTAAGTGGAAACCAGAACAGCGGCCGCAGCTACGACAT
CCGCATATAGAACGCCTCTCGCCAAGTTGGGATGAGCCCCCCGAAGAAAA
CTACACTCACCCTCCAGCGGACCATACCAAGGGCAAATGGGTTCCGGGTA
GCAAGCAGTTGGAGTACCGCGAAAATTTGGATCTTACCAAGCTGGACCAA
CCGGGAGCTAGTTATTGGTGCAACATTTGCTGCAGGCGGCTGAAAAGTCG
CTTATATTATAACCAACATTTGAGGAGTGGCTATCACATCAAAAGAGCTG
AAGCAGAGTGCGAATTAGAGCAGGCTACTCTGGGCAGGGAACTTACCCTA
AGCAAGGACTTCTCAATAAAAGACGATGCGGACAAAAATGAACCAAAGCC
ACCGAAACGACAGAGGAGAGCAAATCTTCTGCGATGCGATCTATGCCGGC
ACACAATGGCAAGGCATTTGATTGGCAAACATTTAATTTCCCATTATCAT
TTCAGAAGACTCCAACAGCAGAGTCGAATTAGAAGACAAGCTTGCTTGCA
GGAAATACTTAAGCACATGGGAAGCATAGTGAGGCAATCTCCATTTCAAT
GCATGCCTTGTCGATTCTATGCCAACACTGAGGAGACCTTTCTTTATCAT
TGGAAATCCCACGAGCACTTGGAGTTGACCAAGAGACTGGGGGGGACTTT
TTGGTGTTCCTTTTGCCAGTTTAACTCGAACACCAATAATTCCATGTTGC
TGCATTTGTTGGATTCCTCCCATAAGGAGGTGCTTTTAGCCCTTAATAGA
TCAGTTCCCATATGTATCGCCCAAAGAAGACGGATCCAGTGCTCTAGGTG
TGGAATGGAATTTTTGTACAACATCCAACTACGTCAACACTCGATCACTG
AGCATCCAGGACTTGCTCTTACAGGGACTGCAGCCGATGAATACCAGAGT
AGGTTTCGATGCAATTTGTGTGGATCCTCACAGAAATCTCGCTTAGCTCT
TCAACGCCATAAAAAGCACAAACACCACTTAGCAAGGTATTTTTGTGCCA
TTTGCCGTTTGGAATTCGACAACTCTTTGGATGCGCGTCGTCATAGAAGC
TTGGTGATACATAAGCAAAAAGCCCGACCCCAAACGTCTATTCCACAACC
CGAAAACGAAATAGAACATATGCTAAGAGAAGTCCTAGAGGAGACAGTTC
CTAGTCCACCCGCCAAAAGAAGTGCGGATGTTAACGCAAAGTGCTCGAAC
AGCAGAAAAACGATTGAATCGTCCCAAAGATTAGCCCAACATCAAGCAGA
AGTTCATTCCTCGGATAATCATTTGTGTTTGAGCTGTGGAATAAGCTTTG
AGTCAGCTCAGGCACTCGGACGACACACCCGCAGCTGTCAACCCCTGGCC
AGCACATCAACCCCCGCTGATCTATCACAAGCTCAAAAGAAATCAATGTA
CTCCTGCGATCAATGTCGCTTCCAATCTCAATATGAGTCCGATCTAGTTT
ATCACCGCATTTTTCACACACGATCCGGAACAATAGGGAAAAACGAGGTT
CTTCAGTGCCCTTTGTGCCCGAAGAATTTCAAAAAGCACTCGCTTAGGGC
TCACCTAAGGAACCATACAAATGAAAAAATTTTTGAATGCACTGAGTGCC
TTCAGAAATTTGCTAGAAGACACAACCTTAAGAACCACGTAATCACAAAG
CATGCCAAAGTAGGCGACAAGGAGAAGAAAAAATATGCTGCGAAAGATGT
TGAACAATCAAAACCCAAATATCAGTGTGGGACATGTGGAAAATTACTGG
CCAAAAAGTATTCCCTTAAACTTCATGAGATTAGCCACTCGAAGGCAGTT
GAGCGCAATTATCTCTGCCATTTTGCGGACTGCTCATATGCAGGGCGAAC
CCCGGAAAGCCTGAAAACCCACTTGGTCTCCCACTCCCAGGAAAATCACA
AATGTGCGCGGATTAACTGCAGCTATGTGGGAAAGAGCGAGCTGCACCTA
AAAAGGCACCTCAAGTCGGCTCATTCCACGGAGAAGAATGGTGAGGAGTG
GTTTTCGTGCGATCAATGCGATTTCAGAGCCCGCATCAAGGGTCACCTCC
GTCGGCACTCGTTGCGCCACTCGGGCCAGAAGCCCCACCAATGCCCCCAC
TGCGACTTCCAGTGCAGCACCATAGATAACCTACGTAAGCACATCATCAA
GACGGGAAAGCATCCCGGCATGTTCATTTACCACTGCGCTAAGTGCTCCG
ATGAAGAAGCCGGTGAAATATTTAAGAGCAACAGCTACAAAGAATACCAG
CACCACTTGAAGACTCACAAGGCTGGCTGAAAGCTTTCTAGACCAT
BS04452.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:16:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31612-RB | 2964 | CG31612-PB | 1..2964 | 17..2980 | 14820 | 100 | Plus |
CG31612-RA | 2964 | CG31612-PA | 1..2964 | 17..2980 | 14820 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:16:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31612-RB | 3433 | CG31612-RB | 208..3172 | 16..2980 | 14825 | 100 | Plus |
CG31612-RA | 3285 | CG31612-RA | 60..3024 | 16..2980 | 14825 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:16:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 21772998..21775441 | 2459..16 | 12220 | 100 | Minus |
2L | 23513712 | 2L | 21762575..21762901 | 2980..2654 | 1635 | 100 | Minus |
2L | 23513712 | 2L | 21765962..21766160 | 2656..2458 | 995 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:16:08 has no hits.
BS04452.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:20:11 Download gff for
BS04452.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31612-RA | 58..3022 | 16..2980 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:44:28 Download gff for
BS04452.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31612-RA | 61..3023 | 17..2979 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:04:55 Download gff for
BS04452.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31612-RA | 59..3021 | 17..2979 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:49:25 Download gff for
BS04452.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31612-RA | 61..3023 | 17..2979 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:49:25 Download gff for
BS04452.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 21762576..21762899 | 2656..2979 | 100 | <- | Minus |
2L | 21765963..21766160 | 2458..2655 | 100 | <- | Minus |
2L | 21773000..21775440 | 17..2457 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:44:28 Download gff for
BS04452.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 21762576..21762899 | 2656..2979 | 100 | <- | Minus |
arm_2L | 21765963..21766160 | 2458..2655 | 100 | <- | Minus |
arm_2L | 21773000..21775440 | 17..2457 | 100 | | Minus |
BS04452.pep Sequence
Translation from 16 to 2979
> BS04452.pep
MNEDHLEDTHLCIRCNATILGLSKYIDHRKRNCLITGKQNASPKTDGRTR
ISADTHVSATLISSSNLDHSYDGFHFTEPEAPSSYLRKTAASHGGKTSKS
LTEAYDLPYELGADLFFSSLQLQSVATGGKIGSVPRQERSKDESWSAPAG
DPLLKAVRENDETVFKPLHFDHEYPEASDEEDDEDEHEEFDAEEDEEEYD
ARRHSPPIVPASHTGGKWKPEQRPQLRHPHIERLSPSWDEPPEENYTHPP
ADHTKGKWVPGSKQLEYRENLDLTKLDQPGASYWCNICCRRLKSRLYYNQ
HLRSGYHIKRAEAECELEQATLGRELTLSKDFSIKDDADKNEPKPPKRQR
RANLLRCDLCRHTMARHLIGKHLISHYHFRRLQQQSRIRRQACLQEILKH
MGSIVRQSPFQCMPCRFYANTEETFLYHWKSHEHLELTKRLGGTFWCSFC
QFNSNTNNSMLLHLLDSSHKEVLLALNRSVPICIAQRRRIQCSRCGMEFL
YNIQLRQHSITEHPGLALTGTAADEYQSRFRCNLCGSSQKSRLALQRHKK
HKHHLARYFCAICRLEFDNSLDARRHRSLVIHKQKARPQTSIPQPENEIE
HMLREVLEETVPSPPAKRSADVNAKCSNSRKTIESSQRLAQHQAEVHSSD
NHLCLSCGISFESAQALGRHTRSCQPLASTSTPADLSQAQKKSMYSCDQC
RFQSQYESDLVYHRIFHTRSGTIGKNEVLQCPLCPKNFKKHSLRAHLRNH
TNEKIFECTECLQKFARRHNLKNHVITKHAKVGDKEKKKYAAKDVEQSKP
KYQCGTCGKLLAKKYSLKLHEISHSKAVERNYLCHFADCSYAGRTPESLK
THLVSHSQENHKCARINCSYVGKSELHLKRHLKSAHSTEKNGEEWFSCDQ
CDFRARIKGHLRRHSLRHSGQKPHQCPHCDFQCSTIDNLRKHIIKTGKHP
GMFIYHCAKCSDEEAGEIFKSNSYKEYQHHLKTHKAG*
BS04452.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:44:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31612-PB | 987 | CG31612-PB | 1..987 | 1..987 | 5370 | 100 | Plus |
CG31612-PA | 987 | CG31612-PA | 1..987 | 1..987 | 5370 | 100 | Plus |
crol-PF | 907 | CG14938-PF | 223..666 | 492..943 | 297 | 22.7 | Plus |
CG5245-PA | 501 | CG5245-PA | 63..494 | 391..946 | 293 | 22.9 | Plus |
crol-PG | 878 | CG14938-PG | 223..637 | 492..943 | 292 | 24.7 | Plus |
CG5245-PA | 501 | CG5245-PA | 78..310 | 725..961 | 250 | 28.7 | Plus |
crol-PF | 907 | CG14938-PF | 223..670 | 285..779 | 243 | 23.4 | Plus |
crol-PF | 907 | CG14938-PF | 223..592 | 626..960 | 220 | 23 | Plus |
CG5245-PA | 501 | CG5245-PA | 66..243 | 787..984 | 204 | 30.7 | Plus |
crol-PF | 907 | CG14938-PF | 223..424 | 731..961 | 178 | 26.1 | Plus |