Clone BS04452 Report

Search the DGRC for BS04452

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:44
Well:52
Vector:pDNR-Dual
Associated Gene/TranscriptCG31612-RA
Protein status:BS04452.pep: full length peptide match
Sequenced Size:2996

Clone Sequence Records

BS04452.3prime Sequence

967 bp (829 high quality bases) assembled on 2005-12-01

> BS04452.3prime
ATGGTCTAGAAAGCTTTCAGCCAGCCTTGTGAGTCTTCAAGTGGTGCTGG
TATTCTTTGTAGCTGTTGCTCTTAAATATTTCACCGGCTTCTTCATCGGA
GCACTTAGCGCAGTGGTAAATGAACATGCCGGGATGCTTTCCCGTCTTGA
TGATGTGCTTACGTAGGTTATCTATGGTGCTGCACTGGAAGTCGCAGTGG
GGGCATTGGTGGGGCTTCTGGCCCGAGTGGCGCAACGAGTGCCGACGGAG
GTGACCCTTGATGCGGGCTCTGAAATCGCATTGATCGCACGAAAACCACT
CCTCACCATTCTTCTCCGTGGAATGAGCCGACTTGAGGTGCCTTTTTAGG
TGCAGCTCGCTCTTTCCCACATAGCTGCAGTTAATCCGCGCACATTTGTG
ATTTTCCTGGGAGTGGGAGACCAAGTGGGTTTTCAGGCTTTCCGGGGTTC
GCCCTGCATATGAGCAGTCCGCAAAATGGCAGAGATAATTGCGCTCAACT
GCCTTCGAGTGGCTAATCTCATGAAGTTTAAGGGAATACTTTTTGGCCAG
TAATTTTCCACATGTCCCACACTGATATTTGGGTTTTGATTGTTCAACAT
CTTTCGCAGCATATTTTTTCTTCTCCTTGTCGCCTACTTTGGCATGCTTT
GTGATTACGTGGTTCTTAAGGTTGTGTCTTCTAGCAAATTTCTGAAGGCA
CTCAGTGCATTCAAAAATTTTTTCATTTGTATGGTTCCTTAGGTGAGCCC
TAAGCGAGTGCTTTTTGAAATTCTTCGGGCACAAAGGGCACTGAAGAACC
TCGTTTTTCCCTATTGTTCCGGATCGTGTGTGAAAAATGCGGTGATAAAC
TAGATCGGACTCATATTGAGATTGGAAGCGACATTGATCGCAGGAGTACA
TTGATTTCTTTTGAGCTTGTGATAGATCAGCGGGGGGTTGATGTGCTGGC
CAGGGGTTGACAGCTGC

BS04452.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG31612-PA 2964 CG31612-RA 2045..2964 936..17 4600 100 Minus
CG31612-PA 2964 CG31612-RA 2015..2049 967..933 175 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:31:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG31612-RB 3433 CG31612-RB 2223..3172 967..17 4730 99.9 Minus
CG31612-RA 3285 CG31612-RA 2075..3024 967..17 4730 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:31:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21772998..21773426 538..967 2100 99.8 Plus
2L 23513712 2L 21762575..21762901 17..343 1635 100 Plus
2L 23513712 2L 21765962..21766160 341..539 995 100 Plus
Blast to na_te.dros performed on 2015-02-10 18:31:38 has no hits.

BS04452.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:48:48 Download gff for BS04452.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31612-PA 2015..2964 17..967 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:10:23 Download gff for BS04452.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31612-PA 2015..2964 17..967 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:01:26 Download gff for BS04452.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31612-RA 2075..3024 17..967 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:05:07 Download gff for BS04452.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31612-RA 2075..3024 17..967 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:05:07 Download gff for BS04452.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 21762575..21762899 17..341 100 <- Plus
2L 21765963..21766160 342..539 100 <- Plus
2L 21773000..21773426 540..967 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:01:26 Download gff for BS04452.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21762575..21762899 17..341 100 <- Plus
arm_2L 21765963..21766160 342..539 100 <- Plus
arm_2L 21773000..21773426 540..967 99   Plus

BS04452.5prime Sequence

881 bp (767 high quality bases) assembled on 2005-12-01

> BS04452.5prime
GAAGTTATCAGTCGACATGAACGAAGACCATCTCGAGGACACTCATCTGT
GCATCAGGTGCAACGCAACTATACTTGGACTCTCAAAATATATTGATCAT
CGAAAACGGAACTGTCTTATAACAGGAAAGCAAAATGCTTCGCCAAAAAC
CGATGGACGAACAAGAATCTCTGCTGACACTCATGTTTCGGCGACGCTTA
TCAGTAGCAGTAATTTGGATCATTCATATGATGGCTTCCATTTCACGGAA
CCGGAGGCTCCAAGTAGTTACCTTCGCAAAACTGCCGCCAGTCATGGCGG
TAAGACCTCAAAGTCCTTGACTGAAGCCTATGATCTCCCATACGAACTTG
GAGCCGATCTCTTCTTTTCGTCCCTACAACTGCAGAGCGTCGCCACGGGT
GGGAAAATAGGATCGGTACCCCGTCAAGAGCGAAGCAAAGATGAGTCCTG
GTCCGCGCCAGCTGGCGATCCCCTACTGAAAGCAGTGAGGGAGAACGATG
AAACTGTCTTTAAGCCGCTTCACTTTGACCATGAGTACCCAGAAGCGAGT
GATGAGGAGGATGATGAGGATGAACACGAGGAATTTGATGCGGAAGAAGA
TGAGGAAGAGTACGATGCAAGGCGTCACTCACCGCCCATTGTGCCCGCCA
GTCACACAGGTGGTAAGTGGAAACCAGAACAGCGGCCGCAGCTACGACAT
CCGCATATAGAACGCCTCTCGCCAAGTTGGGATGAGCCCCCCGAAGAAAA
CTACACTCACCCTCCAGCGGAACATACCAAGGGCAAATGGGTTCCGGGTA
GCAAGCAGTTGGAGTACCGCGAAAATTTGGATCTTACCAAGCTGGACCAA
CCGGGAGCTAGTTATTGGTGCAACATTTGCT

BS04452.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG31612-PA 2964 CG31612-RA 1..865 17..881 4300 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:25:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG31612-RB 3433 CG31612-RB 208..1073 16..881 4315 99.9 Plus
CG31612-RA 3285 CG31612-RA 60..925 16..881 4315 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:25:28
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21774576..21775441 881..16 4315 99.9 Minus
Blast to na_te.dros performed 2015-02-02 12:25:31
Subject Length Description Subject Range Query Range Score Percent Strand
Cr1a 4470 Cr1a DMCR1A 4470bp 1424..1459 619..584 108 77.8 Minus

BS04452.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:48:49 Download gff for BS04452.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31612-PA 1..865 17..881 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:10:24 Download gff for BS04452.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31612-PA 1..865 17..881 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:49:29 Download gff for BS04452.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31612-RA 60..925 16..881 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:55:51 Download gff for BS04452.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31612-RA 60..925 16..881 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:55:51 Download gff for BS04452.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 21774576..21775449 9..881 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:49:29 Download gff for BS04452.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21774576..21775449 9..881 99   Minus

BS04452.complete Sequence

2996 bp assembled on 2008-08-15

GenBank Submission: KX798363

> BS04452.complete
GAAGTTATCAGTCGACATGAACGAAGACCATCTCGAGGACACTCATCTGT
GCATCAGGTGCAACGCAACTATACTTGGACTCTCAAAATATATTGATCAT
CGAAAACGGAACTGTCTTATAACAGGAAAGCAAAATGCTTCGCCAAAAAC
CGATGGACGAACAAGAATCTCTGCTGACACTCATGTTTCGGCGACGCTTA
TCAGTAGCAGTAATTTGGATCATTCATATGATGGCTTCCATTTCACGGAA
CCGGAGGCTCCAAGTAGTTACCTTCGCAAAACTGCCGCCAGTCATGGCGG
TAAGACCTCAAAGTCCTTGACTGAAGCCTATGATCTCCCATACGAACTTG
GAGCCGATCTCTTCTTTTCGTCCCTACAACTGCAGAGCGTCGCCACGGGT
GGGAAAATAGGATCGGTACCCCGTCAAGAGCGAAGCAAAGATGAGTCCTG
GTCCGCGCCAGCTGGCGATCCCCTACTGAAAGCAGTGAGGGAGAACGATG
AAACTGTCTTTAAGCCGCTTCACTTTGACCATGAGTACCCAGAAGCGAGT
GATGAGGAGGATGATGAGGATGAACACGAGGAATTTGATGCGGAAGAAGA
TGAGGAAGAGTACGATGCAAGGCGTCACTCACCGCCCATTGTGCCCGCCA
GTCACACAGGTGGTAAGTGGAAACCAGAACAGCGGCCGCAGCTACGACAT
CCGCATATAGAACGCCTCTCGCCAAGTTGGGATGAGCCCCCCGAAGAAAA
CTACACTCACCCTCCAGCGGACCATACCAAGGGCAAATGGGTTCCGGGTA
GCAAGCAGTTGGAGTACCGCGAAAATTTGGATCTTACCAAGCTGGACCAA
CCGGGAGCTAGTTATTGGTGCAACATTTGCTGCAGGCGGCTGAAAAGTCG
CTTATATTATAACCAACATTTGAGGAGTGGCTATCACATCAAAAGAGCTG
AAGCAGAGTGCGAATTAGAGCAGGCTACTCTGGGCAGGGAACTTACCCTA
AGCAAGGACTTCTCAATAAAAGACGATGCGGACAAAAATGAACCAAAGCC
ACCGAAACGACAGAGGAGAGCAAATCTTCTGCGATGCGATCTATGCCGGC
ACACAATGGCAAGGCATTTGATTGGCAAACATTTAATTTCCCATTATCAT
TTCAGAAGACTCCAACAGCAGAGTCGAATTAGAAGACAAGCTTGCTTGCA
GGAAATACTTAAGCACATGGGAAGCATAGTGAGGCAATCTCCATTTCAAT
GCATGCCTTGTCGATTCTATGCCAACACTGAGGAGACCTTTCTTTATCAT
TGGAAATCCCACGAGCACTTGGAGTTGACCAAGAGACTGGGGGGGACTTT
TTGGTGTTCCTTTTGCCAGTTTAACTCGAACACCAATAATTCCATGTTGC
TGCATTTGTTGGATTCCTCCCATAAGGAGGTGCTTTTAGCCCTTAATAGA
TCAGTTCCCATATGTATCGCCCAAAGAAGACGGATCCAGTGCTCTAGGTG
TGGAATGGAATTTTTGTACAACATCCAACTACGTCAACACTCGATCACTG
AGCATCCAGGACTTGCTCTTACAGGGACTGCAGCCGATGAATACCAGAGT
AGGTTTCGATGCAATTTGTGTGGATCCTCACAGAAATCTCGCTTAGCTCT
TCAACGCCATAAAAAGCACAAACACCACTTAGCAAGGTATTTTTGTGCCA
TTTGCCGTTTGGAATTCGACAACTCTTTGGATGCGCGTCGTCATAGAAGC
TTGGTGATACATAAGCAAAAAGCCCGACCCCAAACGTCTATTCCACAACC
CGAAAACGAAATAGAACATATGCTAAGAGAAGTCCTAGAGGAGACAGTTC
CTAGTCCACCCGCCAAAAGAAGTGCGGATGTTAACGCAAAGTGCTCGAAC
AGCAGAAAAACGATTGAATCGTCCCAAAGATTAGCCCAACATCAAGCAGA
AGTTCATTCCTCGGATAATCATTTGTGTTTGAGCTGTGGAATAAGCTTTG
AGTCAGCTCAGGCACTCGGACGACACACCCGCAGCTGTCAACCCCTGGCC
AGCACATCAACCCCCGCTGATCTATCACAAGCTCAAAAGAAATCAATGTA
CTCCTGCGATCAATGTCGCTTCCAATCTCAATATGAGTCCGATCTAGTTT
ATCACCGCATTTTTCACACACGATCCGGAACAATAGGGAAAAACGAGGTT
CTTCAGTGCCCTTTGTGCCCGAAGAATTTCAAAAAGCACTCGCTTAGGGC
TCACCTAAGGAACCATACAAATGAAAAAATTTTTGAATGCACTGAGTGCC
TTCAGAAATTTGCTAGAAGACACAACCTTAAGAACCACGTAATCACAAAG
CATGCCAAAGTAGGCGACAAGGAGAAGAAAAAATATGCTGCGAAAGATGT
TGAACAATCAAAACCCAAATATCAGTGTGGGACATGTGGAAAATTACTGG
CCAAAAAGTATTCCCTTAAACTTCATGAGATTAGCCACTCGAAGGCAGTT
GAGCGCAATTATCTCTGCCATTTTGCGGACTGCTCATATGCAGGGCGAAC
CCCGGAAAGCCTGAAAACCCACTTGGTCTCCCACTCCCAGGAAAATCACA
AATGTGCGCGGATTAACTGCAGCTATGTGGGAAAGAGCGAGCTGCACCTA
AAAAGGCACCTCAAGTCGGCTCATTCCACGGAGAAGAATGGTGAGGAGTG
GTTTTCGTGCGATCAATGCGATTTCAGAGCCCGCATCAAGGGTCACCTCC
GTCGGCACTCGTTGCGCCACTCGGGCCAGAAGCCCCACCAATGCCCCCAC
TGCGACTTCCAGTGCAGCACCATAGATAACCTACGTAAGCACATCATCAA
GACGGGAAAGCATCCCGGCATGTTCATTTACCACTGCGCTAAGTGCTCCG
ATGAAGAAGCCGGTGAAATATTTAAGAGCAACAGCTACAAAGAATACCAG
CACCACTTGAAGACTCACAAGGCTGGCTGAAAGCTTTCTAGACCAT

BS04452.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:16:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG31612-RB 2964 CG31612-PB 1..2964 17..2980 14820 100 Plus
CG31612-RA 2964 CG31612-PA 1..2964 17..2980 14820 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:16:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG31612-RB 3433 CG31612-RB 208..3172 16..2980 14825 100 Plus
CG31612-RA 3285 CG31612-RA 60..3024 16..2980 14825 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:16:07
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21772998..21775441 2459..16 12220 100 Minus
2L 23513712 2L 21762575..21762901 2980..2654 1635 100 Minus
2L 23513712 2L 21765962..21766160 2656..2458 995 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:16:08 has no hits.

BS04452.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:20:11 Download gff for BS04452.complete
Subject Subject Range Query Range Percent Splice Strand
CG31612-RA 58..3022 16..2980 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:44:28 Download gff for BS04452.complete
Subject Subject Range Query Range Percent Splice Strand
CG31612-RA 61..3023 17..2979 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:04:55 Download gff for BS04452.complete
Subject Subject Range Query Range Percent Splice Strand
CG31612-RA 59..3021 17..2979 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:49:25 Download gff for BS04452.complete
Subject Subject Range Query Range Percent Splice Strand
CG31612-RA 61..3023 17..2979 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:49:25 Download gff for BS04452.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21762576..21762899 2656..2979 100 <- Minus
2L 21765963..21766160 2458..2655 100 <- Minus
2L 21773000..21775440 17..2457 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:44:28 Download gff for BS04452.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21762576..21762899 2656..2979 100 <- Minus
arm_2L 21765963..21766160 2458..2655 100 <- Minus
arm_2L 21773000..21775440 17..2457 100   Minus

BS04452.pep Sequence

Translation from 16 to 2979

> BS04452.pep
MNEDHLEDTHLCIRCNATILGLSKYIDHRKRNCLITGKQNASPKTDGRTR
ISADTHVSATLISSSNLDHSYDGFHFTEPEAPSSYLRKTAASHGGKTSKS
LTEAYDLPYELGADLFFSSLQLQSVATGGKIGSVPRQERSKDESWSAPAG
DPLLKAVRENDETVFKPLHFDHEYPEASDEEDDEDEHEEFDAEEDEEEYD
ARRHSPPIVPASHTGGKWKPEQRPQLRHPHIERLSPSWDEPPEENYTHPP
ADHTKGKWVPGSKQLEYRENLDLTKLDQPGASYWCNICCRRLKSRLYYNQ
HLRSGYHIKRAEAECELEQATLGRELTLSKDFSIKDDADKNEPKPPKRQR
RANLLRCDLCRHTMARHLIGKHLISHYHFRRLQQQSRIRRQACLQEILKH
MGSIVRQSPFQCMPCRFYANTEETFLYHWKSHEHLELTKRLGGTFWCSFC
QFNSNTNNSMLLHLLDSSHKEVLLALNRSVPICIAQRRRIQCSRCGMEFL
YNIQLRQHSITEHPGLALTGTAADEYQSRFRCNLCGSSQKSRLALQRHKK
HKHHLARYFCAICRLEFDNSLDARRHRSLVIHKQKARPQTSIPQPENEIE
HMLREVLEETVPSPPAKRSADVNAKCSNSRKTIESSQRLAQHQAEVHSSD
NHLCLSCGISFESAQALGRHTRSCQPLASTSTPADLSQAQKKSMYSCDQC
RFQSQYESDLVYHRIFHTRSGTIGKNEVLQCPLCPKNFKKHSLRAHLRNH
TNEKIFECTECLQKFARRHNLKNHVITKHAKVGDKEKKKYAAKDVEQSKP
KYQCGTCGKLLAKKYSLKLHEISHSKAVERNYLCHFADCSYAGRTPESLK
THLVSHSQENHKCARINCSYVGKSELHLKRHLKSAHSTEKNGEEWFSCDQ
CDFRARIKGHLRRHSLRHSGQKPHQCPHCDFQCSTIDNLRKHIIKTGKHP
GMFIYHCAKCSDEEAGEIFKSNSYKEYQHHLKTHKAG*

BS04452.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:44:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG31612-PB 987 CG31612-PB 1..987 1..987 5370 100 Plus
CG31612-PA 987 CG31612-PA 1..987 1..987 5370 100 Plus
crol-PF 907 CG14938-PF 223..666 492..943 297 22.7 Plus
CG5245-PA 501 CG5245-PA 63..494 391..946 293 22.9 Plus
crol-PG 878 CG14938-PG 223..637 492..943 292 24.7 Plus
CG5245-PA 501 CG5245-PA 78..310 725..961 250 28.7 Plus
crol-PF 907 CG14938-PF 223..670 285..779 243 23.4 Plus
crol-PF 907 CG14938-PF 223..592 626..960 220 23 Plus
CG5245-PA 501 CG5245-PA 66..243 787..984 204 30.7 Plus
crol-PF 907 CG14938-PF 223..424 731..961 178 26.1 Plus