Clone Sequence Records
BS04456.3prime Sequence
933 bp (838 high quality bases) assembled on 2005-12-01
> BS04456.3prime
ATGGTCTAGAAAGCTTCTAGAACAGCAGCGAATACAGTTGACCTCCAATG
CGCCGACACACGTTTGAGACCATATATGCGCCTGCAGAGATAGTCACGAA
CAGCGTCAACCATCCCAAGAACGTAAATTCGCCGACCCGGGGTCGGATGT
GCCGCGACAGGCCCAACCATCCGCCGTTGTCGATCAGCCAGTAGACCAGG
TCGTCCTCTATGATCTCAGCCAGACCGTCAATCAGGCACTGTAGGTAGTC
GAAATGTCCCTGGCGCACGCAGTCTATGGCAAAGCCGCCGCATACGGCAA
ATATCGAGATTATCTTGCCCCAGGTGATGCTGGAGCGAAAAAGATCCTTG
GCAACTAGGTTGAGCAACATGGGCGCCATGTCGCTGTCCTCCAGCTCGCC
AAACGGGGCCCTCGACAGCTGTCGCGATATGTTTGTGTACACCCGCGGGT
GCATCCGCTCCAGTTCCTCGCCCATGCTGTTCAGTGCCGGGAAAACTTCA
TAGACCACGTGCGAGGAGCCGGGGTCCAGGATGTTGCGCAAACGCTGTGT
CACCTTCCGGTTGAGGACTCCTGCCCGTCGCAGCCGCGCTCTGATGTACT
GACCACACAGACATTTCCCCTGGTTGATGATATCCATTTTGTACTCCTGG
TAGTTAGTCATCGTGCGCGTACTGCTAGCCAGCGAGGATGTGGAGGCGGC
CCGTGTCATGGGTCCGCCGGCGTGAAGGGAGCGTCCGTTAGAGGGATTGG
GTACGCTACCGGGTCCTCCTGCTCCTCCACCGACGCCTCCGCGGAGCGCC
TTCCAGTCGCTGGAGGCCGTTGCAATGGTGCCGCGGCGATTGGGCGTGTA
GATCTCGTGGTCCAGCGACGAGGACTTGAACTTGGCCAGCTTGGGTGGCG
GACTGGTTGTGGGAGCCATGTCGACTGATAACT
BS04456.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33134-PA | 903 | debcl-RA | 1..903 | 919..17 | 4440 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:12:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Debcl-RA | 1724 | CG33134-RA | 625..1529 | 920..16 | 4480 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:12:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6652188..6652647 | 475..16 | 2300 | 100 | Minus |
| 2R | 25286936 | 2R | 6649278..6649579 | 920..619 | 1465 | 99 | Minus |
| 2R | 25286936 | 2R | 6651985..6652132 | 623..476 | 740 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:12:06 has no hits.
BS04456.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:48:52 Download gff for
BS04456.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| debcl-PA | 1..903 | 17..919 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:10:29 Download gff for
BS04456.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33134-PA | 1..903 | 17..919 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:09:02 Download gff for
BS04456.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| debcl-RA | 620..1529 | 16..924 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:33:33 Download gff for
BS04456.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Debcl-RA | 620..1529 | 16..924 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:33:33 Download gff for
BS04456.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6649273..6649578 | 620..924 | 98 | -> | Minus |
| 2R | 6651989..6652132 | 476..619 | 100 | -> | Minus |
| 2R | 6652188..6652647 | 16..475 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:09:02 Download gff for
BS04456.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2539494..2539637 | 476..619 | 100 | -> | Minus |
| arm_2R | 2536778..2537083 | 620..924 | 98 | -> | Minus |
| arm_2R | 2539693..2540152 | 16..475 | 100 | | Minus |
BS04456.5prime Sequence
894 bp (765 high quality bases) assembled on 2005-12-01
> BS04456.5prime
GAAGTTATCAGTCGACATGGCTCCCACAACCAGTCCGCCACCCAAGCTGG
CCAAGTTCAAGTCCTCGTCGCTGGACCACGAGATCTACACGGCCAATCGC
CGCGGCACCATTGCAACGGCCTCCAGCGACTGGAAGGCGCTCCGCGGAGG
CGTCGGTGGAGGAGCAGGAGGACCCGGTAGCGTACCCAATCCCTCTAACG
GACGCTCCCTTCACGCCGGCGGACCCATGACACGGGCCGCCTCCACATCC
TCGCTGGCTAGCAGTACGCGCACGATGACTAACTACCAGGAGTACAAAAT
GGATATCATCAACCAGGGGAAATGTCTGTGTGGTCAGTACATCAGAGCGC
GGCTGCGACGGGCAGGAGTCCTCAACCGGAAGGTGACACAGCGTTTGCGC
AACATCCTGGACCCCGGCTCCTCGCACGTGGTCTATGAAGTTTTCCCGGC
ACTGAACAGCATGGGCGAGGAACTGGAGCGGATGCACCCGCGGGTGTACA
CAAACATATCGCGACAGCTGTCGAGGGCCCCGTTTGGCGAGCTGGAGGAC
AGCGACATGGCGCCCATGTTGCTCAACCTAGTTGCCAAGGATCTTTTTCG
CTCCAGCATCACCTGGGGCAAGATAATCTCGATATTTGCCGTATGCGGCG
GCTTTGCCATAGACTGCGTGCGCCAGGGACATTTCGACTACCTACAGTGC
CTGATTGACGGTCTGGCTGAGATCATAGAGGACGACCTGGTCTACTGGCT
GATCGACAACGGCGGATGGTTGGGCCTGTCGCGGCACATCCGACCCCGGG
TCGGCGAATTTTACGTTCTTGGGATGGTTGACGCTGTTCGTGACTATCTC
TGCAGGCGCATATATGGTCTCAAACGTGTGTCGGCGCATTGGAG
BS04456.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33134-PA | 903 | debcl-RA | 1..795 | 17..811 | 3925 | 99.7 | Plus |
| CG33134-PA | 903 | debcl-RA | 793..877 | 810..894 | 425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:09:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Debcl-RA | 1724 | CG33134-RA | 625..1502 | 16..894 | 4340 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:09:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6652188..6652620 | 461..894 | 2120 | 99.8 | Plus |
| 2R | 25286936 | 2R | 6649278..6649579 | 16..317 | 1480 | 99.3 | Plus |
| 2R | 25286936 | 2R | 6651985..6652132 | 313..460 | 740 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:09:24 has no hits.
BS04456.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:48:53 Download gff for
BS04456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| debcl-PA | 1..877 | 17..894 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:10:30 Download gff for
BS04456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33134-PA | 1..877 | 17..894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:45:16 Download gff for
BS04456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| debcl-RA | 620..1502 | 12..894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:50:49 Download gff for
BS04456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Debcl-RA | 620..1502 | 12..894 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:50:49 Download gff for
BS04456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6649273..6649578 | 12..316 | 99 | -> | Plus |
| 2R | 6651989..6652132 | 317..460 | 100 | -> | Plus |
| 2R | 6652188..6652620 | 461..894 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:45:16 Download gff for
BS04456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2536778..2537083 | 12..316 | 99 | -> | Plus |
| arm_2R | 2539494..2539637 | 317..460 | 100 | -> | Plus |
| arm_2R | 2539693..2540125 | 461..894 | 99 | | Plus |
BS04456.complete Sequence
935 bp (935 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ634945
> BS04456.complete
GAAGTTATCAGTCGACATGGCTCCCACAACCAGTCCGCCACCCAAGCTGG
CCAAGTTCAAGTCCTCGTCGCTGGACCACGAGATCTACACGGCCAATCGC
CGCGGCACCATTGCAACGGCCTCCAGCGACTGGAAGGCGCTCCGCGGAGG
CGTCGGTGGAGGAGCAGGAGGACCCGGTAGCGTACCCAATCCCTCTAACG
GACGCTCCCTTCACGCCGGCGGACCCATGACACGGGCCGCCTCCACATCC
TCGCTGGCTAGCAGTACGCGCACGATGACTAACTACCAGGAGTACAAAAT
GGATATCATCAACCAGGGGAAATGTCTGTGTGGTCAGTACATCAGAGCGC
GGCTGCGACGGGCAGGAGTCCTCAACCGGAAGGTGACACAGCGTTTGCGC
AACATCCTGGACCCCGGCTCCTCGCACGTGGTCTATGAAGTTTTCCCGGC
ACTGAACAGCATGGGCGAGGAACTGGAGCGGATGCACCCGCGGGTGTACA
CAAACATATCGCGACAGCTGTCGAGGGCCCCGTTTGGCGAGCTGGAGGAC
AGCGACATGGCGCCCATGTTGCTCAACCTAGTTGCCAAGGATCTTTTTCG
CTCCAGCATCACCTGGGGCAAGATAATCTCGATATTTGCCGTATGCGGCG
GCTTTGCCATAGACTGCGTGCGCCAGGGACATTTCGACTACCTACAGTGC
CTGATTGACGGTCTGGCTGAGATCATAGAGGACGACCTGGTCTACTGGCT
GATCGACAACGGCGGATGGTTGGGCCTGTCGCGGCACATCCGACCCCGGG
TCGGCGAATTTACGTTCTTGGGATGGTTGACGCTGTTCGTGACTATCTCT
GCAGGCGCATATATGGTCTCAAACGTGTGTCGGCGCATTGGAGGTCAACT
GTATTCGCTGCTGTTCTAGAAGCTTTCTAGACCAT
BS04456.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:16:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Debcl-RA | 903 | CG33134-PA | 1..903 | 17..919 | 4485 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:16:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Debcl-RA | 1724 | CG33134-RA | 625..1529 | 16..920 | 4495 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:16:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6652188..6652647 | 461..920 | 2300 | 100 | Plus |
| 2R | 25286936 | 2R | 6649278..6649579 | 16..317 | 1480 | 99.3 | Plus |
| 2R | 25286936 | 2R | 6651985..6652132 | 313..460 | 740 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:16:05 has no hits.
BS04456.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:32:12 Download gff for
BS04456.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| debcl-RA | 1..903 | 17..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:16:22 Download gff for
BS04456.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| debcl-RA | 533..1442 | 12..920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:39:06 Download gff for
BS04456.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| debcl-RA | 626..1528 | 17..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:32:12 Download gff for
BS04456.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| debcl-RA | 533..1442 | 12..920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:03:44 Download gff for
BS04456.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Debcl-RA | 626..1528 | 17..919 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:03:44 Download gff for
BS04456.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6649279..6649578 | 17..316 | 99 | -> | Plus |
| 2R | 6651989..6652132 | 317..460 | 100 | -> | Plus |
| 2R | 6652188..6652646 | 461..919 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:39:06 Download gff for
BS04456.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2536784..2537083 | 17..316 | 99 | -> | Plus |
| arm_2R | 2539494..2539637 | 317..460 | 100 | -> | Plus |
| arm_2R | 2539693..2540151 | 461..919 | 100 | | Plus |
BS04456.pep Sequence
Translation from 16 to 918
> BS04456.pep
MAPTTSPPPKLAKFKSSSLDHEIYTANRRGTIATASSDWKALRGGVGGGA
GGPGSVPNPSNGRSLHAGGPMTRAASTSSLASSTRTMTNYQEYKMDIINQ
GKCLCGQYIRARLRRAGVLNRKVTQRLRNILDPGSSHVVYEVFPALNSMG
EELERMHPRVYTNISRQLSRAPFGELEDSDMAPMLLNLVAKDLFRSSITW
GKIISIFAVCGGFAIDCVRQGHFDYLQCLIDGLAEIIEDDLVYWLIDNGG
WLGLSRHIRPRVGEFTFLGWLTLFVTISAGAYMVSNVCRRIGGQLYSLLF
*
BS04456.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:09:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Debcl-PA | 300 | CG33134-PA | 1..300 | 1..300 | 1572 | 100 | Plus |
| Buffy-PA | 299 | CG8238-PA | 88..284 | 96..291 | 521 | 47.7 | Plus |
