Clone Sequence Records
BS04457.3prime Sequence
944 bp (827 high quality bases) assembled on 2005-12-01
> BS04457.3prime
ATGGTCTAGAAAGCTTTCAGTCCTCGCCCTTGGTGACCACGGAGACGGGT
GTGGAGGCGTTGCTGCTGGCACCTGCCGCGCTGTTCGGCGATTGGGCGGC
CGTCGAGATCAGTCCGCCCGTTAGCAGTCCGCCGCCTCCGTTGCCGCCCG
CTGGGGGCGTGGCATGCGGCGGTGTGGGATGAGGCACTAGCTTGGGACTC
TCGCGCGGACTGCTGTTGCTGCACGGCGGGCTAACTTGGCTCATCGCAGA
GAGTCCTGCGTGCAGCGATAGATTCTGCGGATAGCCGGCCGATGCTGCCG
CCGCTGCTGCAGCTGCTCCCGCGCCAAAGATCCCATTCAGATTGCTCAGG
CCCATGTACTGGGAGAGCAGGGTGTGGAAGTTGGGCAGCTTGTAGTGGGG
CGCCATCAGGTGCTGGGGCAGCAAGCCGGCGGCAGCGGCTGCAGCGGGAT
TAAAGTGCTGGTGGAGGGCAAAGTGCGGGGGCCAGAACTCCGACTGCATC
GAGCCCGGATGACCCGGAAGTCCATGTGGCGGCAGGGGAATGCCCAGCGG
AAACTCCGGCAGACCTTGTTCGGGCAGAAGGTAACCGGCCTTGTCCTGAT
TCATAAACTTCTCACGTTTGCGCCATTTAGCCCGACGGTTCTGGAACCAC
ACCTGCACGCGTGCTTCGCTCAAATCCAATCGCATGGCCAGATCCTCCCT
TGTGAAAACATCGGGATACTGGGTCTTCTCGAAGGCTCGCTCCAGCTGAT
GCAATTGAAATGTTGTAAATGTTGTGCGAGATCTTCGAACTTTACGCGGC
CTCTCCATATCGCTGAGATCATGGCCATTGTTCAGACTGGAGGACAGCTC
GTCGTCGTTATCCACGTCCAGGCCGCCGTCCGTATTCGTTGGGGAGTCCT
CTCGTTTGGGCCTGACCTTGCATTGTTGCTGCTGCTGCTGCTGC
BS04457.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33152-PA | 1230 | hbn-RA | 338..1230 | 909..17 | 4465 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:34:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hbn-RA | 1798 | CG33152-RA | 625..1557 | 944..12 | 4575 | 99.5 | Minus |
repo-RA | 2996 | CG31240-RA | 1286..1387 | 719..618 | 225 | 82.5 | Minus |
CG34340-RF | 2989 | CG34340-RF | 807..915 | 726..618 | 215 | 79.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:34:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20954909..20955463 | 12..566 | 2760 | 99.8 | Plus |
2R | 25286936 | 2R | 20958539..20958700 | 783..944 | 705 | 95.7 | Plus |
2R | 25286936 | 2R | 20958258..20958391 | 651..784 | 670 | 100 | Plus |
2R | 25286936 | 2R | 20955686..20955780 | 563..657 | 475 | 100 | Plus |
3R | 32079331 | 3R | 18237892..18237993 | 719..618 | 225 | 81.4 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:34:23 has no hits.
BS04457.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:48:54 Download gff for
BS04457.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hbn-PA | 303..1230 | 17..944 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:10:32 Download gff for
BS04457.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33152-PA | 303..1230 | 17..944 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:06:18 Download gff for
BS04457.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hbn-RA | 625..1561 | 9..944 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:01:47 Download gff for
BS04457.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hbn-RA | 625..1561 | 9..944 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:01:47 Download gff for
BS04457.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20958539..20958700 | 783..944 | 97 | | Plus |
2R | 20954905..20955461 | 9..564 | 99 | <- | Plus |
2R | 20955688..20955775 | 565..652 | 100 | <- | Plus |
2R | 20958260..20958389 | 653..782 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:06:18 Download gff for
BS04457.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16842410..16842966 | 9..564 | 99 | <- | Plus |
arm_2R | 16843193..16843280 | 565..652 | 100 | <- | Plus |
arm_2R | 16845765..16845894 | 653..782 | 100 | <- | Plus |
arm_2R | 16846044..16846205 | 783..944 | 97 | | Plus |
BS04457.5prime Sequence
888 bp (868 high quality bases) assembled on 2005-12-01
> BS04457.5prime
GAAGTTATCAGTCGACATGATGACCACGACGACCTCGCAGCACCATCAGC
ACCATCCAATCATGCCGCCAGCCATGCGCCCCGCCCCCGTTCAGGAGAGT
CCTGTCTCACGCCCCCGCGCCGTCTACAGCATCGATCAGATCCTGGGCAA
TCAGCACCAGATCAAGCGCAGTGATACACCCAGCGAAGTGCTGATTACGC
ATCCCCACCACGGCCATCCGCATCACATCCATCATTTGCACAGCAGCAAT
AGCAACGGCAGCAATCACTTGTCGCATCAGCAGCAGCAGCAGCACTCGCA
ACAGCAACACCATTCGCAGCAGCAGCAGCAGCAGCAACAATTGCAGGTTC
AGGCCAAACGAGAGGACTCCCCAACGAATACGGACGGCGGCCTGGACGTG
GATAACGACGACGAGCTGTCCTCCAGTCTGAACAATGGCCATGATCTCAG
CGATATGGAGAGGCCGCGTAAAGTTCGAAGATCTCGCACAACATTTACAA
CATTTCAATTGCATCAGCTGGAGCGAGCCTTCGAGAAGACCCAGTATCCC
GATGTTTTCACAAGGGAGGATCTGGCCATGCGATTGGATTTGAGCGAAGC
ACGCGTGCAGGTGTGGTTCCAGAACCGTCGGGCTAAATGGCGCAAACGTG
AGAAGTTTATGAATCAGGACAAGGCCGGTTACCTTCTGCCCGAACAAGGT
CTGCCGGAGTTTCCGCTGGGCATTCCCCTGCCGCCACATGGACTTCCGGG
TCATCCGGGCTCGATGCAGTCGGAGTTCTGGCCCCCGCACTTTGCCCTCC
ACCAGCACTTTAATCCCGCTGCAGCCGCTGCCGCCGGCTTGCTGCCCCAG
CACCTGATGGCGCCCCACTACAAGCTGCCCCACTTCCA
BS04457.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33152-PA | 1230 | hbn-RA | 1..872 | 17..888 | 4335 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:37:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hbn-RA | 1798 | CG33152-RA | 323..1194 | 17..888 | 4345 | 99.9 | Plus |
repo-RA | 2996 | CG31240-RA | 1286..1387 | 544..645 | 225 | 82.5 | Plus |
CG34340-RF | 2989 | CG34340-RF | 807..915 | 537..645 | 215 | 79.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:37:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20958539..20958846 | 480..173 | 1540 | 100 | Minus |
2R | 25286936 | 2R | 20955272..20955463 | 888..697 | 945 | 99.5 | Minus |
2R | 25286936 | 2R | 20960431..20960587 | 173..17 | 785 | 100 | Minus |
2R | 25286936 | 2R | 20958258..20958391 | 612..479 | 670 | 100 | Minus |
2R | 25286936 | 2R | 20955686..20955780 | 700..606 | 475 | 100 | Minus |
3R | 32079331 | 3R | 18237892..18237993 | 544..645 | 225 | 81.4 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:37:06 has no hits.
BS04457.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:48:55 Download gff for
BS04457.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hbn-PA | 1..871 | 17..887 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:10:33 Download gff for
BS04457.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33152-PA | 1..871 | 17..887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:16:12 Download gff for
BS04457.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hbn-RA | 315..1193 | 11..887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:40:31 Download gff for
BS04457.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hbn-RA | 315..1193 | 11..887 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:40:31 Download gff for
BS04457.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20955273..20955461 | 699..887 | 99 | <- | Minus |
2R | 20955688..20955775 | 611..698 | 100 | <- | Minus |
2R | 20958260..20958389 | 481..610 | 100 | <- | Minus |
2R | 20958539..20958845 | 174..480 | 100 | <- | Minus |
2R | 20960431..20960595 | 11..173 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:16:12 Download gff for
BS04457.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16842778..16842966 | 699..887 | 99 | <- | Minus |
arm_2R | 16843193..16843280 | 611..698 | 100 | <- | Minus |
arm_2R | 16845765..16845894 | 481..610 | 100 | <- | Minus |
arm_2R | 16846044..16846350 | 174..480 | 100 | <- | Minus |
arm_2R | 16847936..16848100 | 11..173 | 98 | | Minus |
BS04457.complete Sequence
1262 bp (1262 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ634946
> BS04457.complete
GAAGTTATCAGTCGACATGATGACCACGACGACCTCGCAGCACCATCAGC
ACCATCCAATCATGCCGCCAGCCATGCGCCCCGCCCCCGTTCAGGAGAGT
CCTGTCTCACGCCCCCGCGCCGTCTACAGCATCGATCAGATCCTGGGCAA
TCAGCACCAGATCAAGCGCAGTGATACACCCAGCGAAGTGCTGATTACGC
ATCCCCACCACGGCCATCCGCATCACATCCATCATTTGCACAGCAGCAAT
AGCAACGGCAGCAATCACTTGTCGCATCAGCAGCAGCAGCAGCACTCGCA
ACAGCAACACCATTCGCAGCAGCAGCAGCAGCAGCAACAATTGCAGGTTC
AGGCCAAACGAGAGGACTCCCCAACGAATACGGACGGCGGCCTGGACGTG
GATAACGACGACGAGCTGTCCTCCAGTCTGAACAATGGCCATGATCTCAG
CGATATGGAGAGGCCGCGTAAAGTTCGAAGATCTCGCACAACATTTACAA
CATTTCAATTGCATCAGCTGGAGCGAGCCTTCGAGAAGACCCAGTATCCC
GATGTTTTCACAAGGGAGGATCTGGCCATGCGATTGGATTTGAGCGAAGC
ACGCGTGCAGGTGTGGTTCCAGAACCGTCGGGCTAAATGGCGCAAACGTG
AGAAGTTTATGAATCAGGACAAGGCCGGTTACCTTCTGCCCGAACAAGGT
CTGCCGGAGTTTCCGCTGGGCATTCCCCTGCCGCCACATGGACTTCCGGG
TCATCCGGGCTCGATGCAGTCGGAGTTCTGGCCCCCGCACTTTGCCCTCC
ACCAGCACTTTAATCCCGCTGCAGCCGCTGCCGCCGGCTTGCTGCCCCAG
CACCTGATGGCGCCCCACTACAAGCTGCCCAACTTCCACACCCTGCTCTC
CCAGTACATGGGCCTGAGCAATCTGAATGGGATCTTTGGCGCGGGAGCAG
CTGCAGCAGCGGCGGCAGCATCGGCCGGCTATCCGCAGAATCTATCGCTG
CACGCAGGACTCTCTGCGATGAGCCAAGTTAGCCCGCCGTGCAGCAACAG
CAGTCCGCGCGAGAGTCCCAAGCTAGTGCCTCATCCCACACCGCCGCATG
CCACGCCCCCAGCGGGCGGCAACGGAGGCGGCGGACTGCTAACGGGCGGA
CTGATCTCGACGGCCGCCCAATCGCCGAACAGCGCGGCAGGTGCCAGCAG
CAACGCCTCCACACCCGTCTCCGTGGTCACCAAGGGCGAGGACTGAAAGC
TTTCTAGACCAT
BS04457.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:38:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hbn-RA | 1230 | CG33152-PA | 1..1230 | 17..1246 | 6150 | 100 | Plus |
repo-RA | 1839 | CG31240-PA | 981..1082 | 544..645 | 225 | 81.4 | Plus |
CG34340-RF | 1764 | CG34340-PF | 218..326 | 537..645 | 215 | 79.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:38:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hbn-RA | 1798 | CG33152-RA | 323..1557 | 17..1251 | 6160 | 99.9 | Plus |
repo-RA | 2996 | CG31240-RA | 1286..1387 | 544..645 | 225 | 81.4 | Plus |
CG34340-RF | 2989 | CG34340-RF | 807..915 | 537..645 | 215 | 79.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:38:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20954909..20955463 | 1251..697 | 2760 | 99.8 | Minus |
2R | 25286936 | 2R | 20958539..20958846 | 480..173 | 1540 | 100 | Minus |
2R | 25286936 | 2R | 20960431..20960587 | 173..17 | 785 | 100 | Minus |
2R | 25286936 | 2R | 20958258..20958391 | 612..479 | 670 | 100 | Minus |
2R | 25286936 | 2R | 20955686..20955780 | 700..606 | 475 | 100 | Minus |
3R | 32079331 | 3R | 18237892..18237993 | 544..645 | 225 | 81.4 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:38:51 has no hits.
BS04457.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:32:14 Download gff for
BS04457.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hbn-RA | 1..1230 | 17..1246 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:16:24 Download gff for
BS04457.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hbn-RA | 315..1561 | 11..1254 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:31:20 Download gff for
BS04457.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hbn-RA | 323..1551 | 17..1245 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:32:14 Download gff for
BS04457.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hbn-RA | 315..1561 | 11..1254 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:23:18 Download gff for
BS04457.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hbn-RA | 323..1551 | 17..1245 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:23:18 Download gff for
BS04457.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20954915..20955461 | 699..1245 | 100 | <- | Minus |
2R | 20955688..20955775 | 611..698 | 100 | <- | Minus |
2R | 20958260..20958389 | 481..610 | 100 | <- | Minus |
2R | 20958539..20958845 | 174..480 | 100 | <- | Minus |
2R | 20960431..20960587 | 17..173 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:31:20 Download gff for
BS04457.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16842420..16842966 | 699..1245 | 100 | <- | Minus |
arm_2R | 16843193..16843280 | 611..698 | 100 | <- | Minus |
arm_2R | 16845765..16845894 | 481..610 | 100 | <- | Minus |
arm_2R | 16846044..16846350 | 174..480 | 100 | <- | Minus |
arm_2R | 16847936..16848092 | 17..173 | 100 | | Minus |
BS04457.pep Sequence
Translation from 16 to 1245
> BS04457.pep
MMTTTTSQHHQHHPIMPPAMRPAPVQESPVSRPRAVYSIDQILGNQHQIK
RSDTPSEVLITHPHHGHPHHIHHLHSSNSNGSNHLSHQQQQQHSQQQHHS
QQQQQQQQLQVQAKREDSPTNTDGGLDVDNDDELSSSLNNGHDLSDMERP
RKVRRSRTTFTTFQLHQLERAFEKTQYPDVFTREDLAMRLDLSEARVQVW
FQNRRAKWRKREKFMNQDKAGYLLPEQGLPEFPLGIPLPPHGLPGHPGSM
QSEFWPPHFALHQHFNPAAAAAAGLLPQHLMAPHYKLPNFHTLLSQYMGL
SNLNGIFGAGAAAAAAAASAGYPQNLSLHAGLSAMSQVSPPCSNSSPRES
PKLVPHPTPPHATPPAGGNGGGGLLTGGLISTAAQSPNSAAGASSNASTP
VSVVTKGED*
BS04457.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:50:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hbn-PA | 409 | CG33152-PA | 1..409 | 1..409 | 2193 | 100 | Plus |
Rx-PB | 904 | CG10052-PB | 460..736 | 87..365 | 332 | 34.7 | Plus |
al-PA | 408 | CG3935-PA | 71..306 | 139..364 | 312 | 35.6 | Plus |
otp-PE | 409 | CG10036-PE | 74..323 | 117..361 | 273 | 32.4 | Plus |
otp-PK | 416 | CG10036-PK | 74..330 | 117..361 | 272 | 32.1 | Plus |