Clone BS04457 Report

Search the DGRC for BS04457

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:44
Well:57
Vector:pDNR-Dual
Associated Gene/Transcripthbn-RA
Protein status:BS04457.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04457.3prime Sequence

944 bp (827 high quality bases) assembled on 2005-12-01

> BS04457.3prime
ATGGTCTAGAAAGCTTTCAGTCCTCGCCCTTGGTGACCACGGAGACGGGT
GTGGAGGCGTTGCTGCTGGCACCTGCCGCGCTGTTCGGCGATTGGGCGGC
CGTCGAGATCAGTCCGCCCGTTAGCAGTCCGCCGCCTCCGTTGCCGCCCG
CTGGGGGCGTGGCATGCGGCGGTGTGGGATGAGGCACTAGCTTGGGACTC
TCGCGCGGACTGCTGTTGCTGCACGGCGGGCTAACTTGGCTCATCGCAGA
GAGTCCTGCGTGCAGCGATAGATTCTGCGGATAGCCGGCCGATGCTGCCG
CCGCTGCTGCAGCTGCTCCCGCGCCAAAGATCCCATTCAGATTGCTCAGG
CCCATGTACTGGGAGAGCAGGGTGTGGAAGTTGGGCAGCTTGTAGTGGGG
CGCCATCAGGTGCTGGGGCAGCAAGCCGGCGGCAGCGGCTGCAGCGGGAT
TAAAGTGCTGGTGGAGGGCAAAGTGCGGGGGCCAGAACTCCGACTGCATC
GAGCCCGGATGACCCGGAAGTCCATGTGGCGGCAGGGGAATGCCCAGCGG
AAACTCCGGCAGACCTTGTTCGGGCAGAAGGTAACCGGCCTTGTCCTGAT
TCATAAACTTCTCACGTTTGCGCCATTTAGCCCGACGGTTCTGGAACCAC
ACCTGCACGCGTGCTTCGCTCAAATCCAATCGCATGGCCAGATCCTCCCT
TGTGAAAACATCGGGATACTGGGTCTTCTCGAAGGCTCGCTCCAGCTGAT
GCAATTGAAATGTTGTAAATGTTGTGCGAGATCTTCGAACTTTACGCGGC
CTCTCCATATCGCTGAGATCATGGCCATTGTTCAGACTGGAGGACAGCTC
GTCGTCGTTATCCACGTCCAGGCCGCCGTCCGTATTCGTTGGGGAGTCCT
CTCGTTTGGGCCTGACCTTGCATTGTTGCTGCTGCTGCTGCTGC

BS04457.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG33152-PA 1230 hbn-RA 338..1230 909..17 4465 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:34:25
Subject Length Description Subject Range Query Range Score Percent Strand
hbn-RA 1798 CG33152-RA 625..1557 944..12 4575 99.5 Minus
repo-RA 2996 CG31240-RA 1286..1387 719..618 225 82.5 Minus
CG34340-RF 2989 CG34340-RF 807..915 726..618 215 79.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:34:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20954909..20955463 12..566 2760 99.8 Plus
2R 25286936 2R 20958539..20958700 783..944 705 95.7 Plus
2R 25286936 2R 20958258..20958391 651..784 670 100 Plus
2R 25286936 2R 20955686..20955780 563..657 475 100 Plus
3R 32079331 3R 18237892..18237993 719..618 225 81.4 Minus
Blast to na_te.dros performed on 2015-02-12 04:34:23 has no hits.

BS04457.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:48:54 Download gff for BS04457.3prime
Subject Subject Range Query Range Percent Splice Strand
hbn-PA 303..1230 17..944 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:10:32 Download gff for BS04457.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33152-PA 303..1230 17..944 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:06:18 Download gff for BS04457.3prime
Subject Subject Range Query Range Percent Splice Strand
hbn-RA 625..1561 9..944 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:01:47 Download gff for BS04457.3prime
Subject Subject Range Query Range Percent Splice Strand
hbn-RA 625..1561 9..944 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:01:47 Download gff for BS04457.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 20958539..20958700 783..944 97   Plus
2R 20954905..20955461 9..564 99 <- Plus
2R 20955688..20955775 565..652 100 <- Plus
2R 20958260..20958389 653..782 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:06:18 Download gff for BS04457.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16842410..16842966 9..564 99 <- Plus
arm_2R 16843193..16843280 565..652 100 <- Plus
arm_2R 16845765..16845894 653..782 100 <- Plus
arm_2R 16846044..16846205 783..944 97   Plus

BS04457.5prime Sequence

888 bp (868 high quality bases) assembled on 2005-12-01

> BS04457.5prime
GAAGTTATCAGTCGACATGATGACCACGACGACCTCGCAGCACCATCAGC
ACCATCCAATCATGCCGCCAGCCATGCGCCCCGCCCCCGTTCAGGAGAGT
CCTGTCTCACGCCCCCGCGCCGTCTACAGCATCGATCAGATCCTGGGCAA
TCAGCACCAGATCAAGCGCAGTGATACACCCAGCGAAGTGCTGATTACGC
ATCCCCACCACGGCCATCCGCATCACATCCATCATTTGCACAGCAGCAAT
AGCAACGGCAGCAATCACTTGTCGCATCAGCAGCAGCAGCAGCACTCGCA
ACAGCAACACCATTCGCAGCAGCAGCAGCAGCAGCAACAATTGCAGGTTC
AGGCCAAACGAGAGGACTCCCCAACGAATACGGACGGCGGCCTGGACGTG
GATAACGACGACGAGCTGTCCTCCAGTCTGAACAATGGCCATGATCTCAG
CGATATGGAGAGGCCGCGTAAAGTTCGAAGATCTCGCACAACATTTACAA
CATTTCAATTGCATCAGCTGGAGCGAGCCTTCGAGAAGACCCAGTATCCC
GATGTTTTCACAAGGGAGGATCTGGCCATGCGATTGGATTTGAGCGAAGC
ACGCGTGCAGGTGTGGTTCCAGAACCGTCGGGCTAAATGGCGCAAACGTG
AGAAGTTTATGAATCAGGACAAGGCCGGTTACCTTCTGCCCGAACAAGGT
CTGCCGGAGTTTCCGCTGGGCATTCCCCTGCCGCCACATGGACTTCCGGG
TCATCCGGGCTCGATGCAGTCGGAGTTCTGGCCCCCGCACTTTGCCCTCC
ACCAGCACTTTAATCCCGCTGCAGCCGCTGCCGCCGGCTTGCTGCCCCAG
CACCTGATGGCGCCCCACTACAAGCTGCCCCACTTCCA

BS04457.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG33152-PA 1230 hbn-RA 1..872 17..888 4335 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:37:09
Subject Length Description Subject Range Query Range Score Percent Strand
hbn-RA 1798 CG33152-RA 323..1194 17..888 4345 99.9 Plus
repo-RA 2996 CG31240-RA 1286..1387 544..645 225 82.5 Plus
CG34340-RF 2989 CG34340-RF 807..915 537..645 215 79.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:37:03
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20958539..20958846 480..173 1540 100 Minus
2R 25286936 2R 20955272..20955463 888..697 945 99.5 Minus
2R 25286936 2R 20960431..20960587 173..17 785 100 Minus
2R 25286936 2R 20958258..20958391 612..479 670 100 Minus
2R 25286936 2R 20955686..20955780 700..606 475 100 Minus
3R 32079331 3R 18237892..18237993 544..645 225 81.4 Plus
Blast to na_te.dros performed on 2015-02-12 11:37:06 has no hits.

BS04457.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:48:55 Download gff for BS04457.5prime
Subject Subject Range Query Range Percent Splice Strand
hbn-PA 1..871 17..887 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:10:33 Download gff for BS04457.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33152-PA 1..871 17..887 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:16:12 Download gff for BS04457.5prime
Subject Subject Range Query Range Percent Splice Strand
hbn-RA 315..1193 11..887 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:40:31 Download gff for BS04457.5prime
Subject Subject Range Query Range Percent Splice Strand
hbn-RA 315..1193 11..887 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:40:31 Download gff for BS04457.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 20955273..20955461 699..887 99 <- Minus
2R 20955688..20955775 611..698 100 <- Minus
2R 20958260..20958389 481..610 100 <- Minus
2R 20958539..20958845 174..480 100 <- Minus
2R 20960431..20960595 11..173 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:16:12 Download gff for BS04457.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16842778..16842966 699..887 99 <- Minus
arm_2R 16843193..16843280 611..698 100 <- Minus
arm_2R 16845765..16845894 481..610 100 <- Minus
arm_2R 16846044..16846350 174..480 100 <- Minus
arm_2R 16847936..16848100 11..173 98   Minus

BS04457.complete Sequence

1262 bp (1262 high quality bases) assembled on 2005-09-13

GenBank Submission: FJ634946

> BS04457.complete
GAAGTTATCAGTCGACATGATGACCACGACGACCTCGCAGCACCATCAGC
ACCATCCAATCATGCCGCCAGCCATGCGCCCCGCCCCCGTTCAGGAGAGT
CCTGTCTCACGCCCCCGCGCCGTCTACAGCATCGATCAGATCCTGGGCAA
TCAGCACCAGATCAAGCGCAGTGATACACCCAGCGAAGTGCTGATTACGC
ATCCCCACCACGGCCATCCGCATCACATCCATCATTTGCACAGCAGCAAT
AGCAACGGCAGCAATCACTTGTCGCATCAGCAGCAGCAGCAGCACTCGCA
ACAGCAACACCATTCGCAGCAGCAGCAGCAGCAGCAACAATTGCAGGTTC
AGGCCAAACGAGAGGACTCCCCAACGAATACGGACGGCGGCCTGGACGTG
GATAACGACGACGAGCTGTCCTCCAGTCTGAACAATGGCCATGATCTCAG
CGATATGGAGAGGCCGCGTAAAGTTCGAAGATCTCGCACAACATTTACAA
CATTTCAATTGCATCAGCTGGAGCGAGCCTTCGAGAAGACCCAGTATCCC
GATGTTTTCACAAGGGAGGATCTGGCCATGCGATTGGATTTGAGCGAAGC
ACGCGTGCAGGTGTGGTTCCAGAACCGTCGGGCTAAATGGCGCAAACGTG
AGAAGTTTATGAATCAGGACAAGGCCGGTTACCTTCTGCCCGAACAAGGT
CTGCCGGAGTTTCCGCTGGGCATTCCCCTGCCGCCACATGGACTTCCGGG
TCATCCGGGCTCGATGCAGTCGGAGTTCTGGCCCCCGCACTTTGCCCTCC
ACCAGCACTTTAATCCCGCTGCAGCCGCTGCCGCCGGCTTGCTGCCCCAG
CACCTGATGGCGCCCCACTACAAGCTGCCCAACTTCCACACCCTGCTCTC
CCAGTACATGGGCCTGAGCAATCTGAATGGGATCTTTGGCGCGGGAGCAG
CTGCAGCAGCGGCGGCAGCATCGGCCGGCTATCCGCAGAATCTATCGCTG
CACGCAGGACTCTCTGCGATGAGCCAAGTTAGCCCGCCGTGCAGCAACAG
CAGTCCGCGCGAGAGTCCCAAGCTAGTGCCTCATCCCACACCGCCGCATG
CCACGCCCCCAGCGGGCGGCAACGGAGGCGGCGGACTGCTAACGGGCGGA
CTGATCTCGACGGCCGCCCAATCGCCGAACAGCGCGGCAGGTGCCAGCAG
CAACGCCTCCACACCCGTCTCCGTGGTCACCAAGGGCGAGGACTGAAAGC
TTTCTAGACCAT

BS04457.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:38:52
Subject Length Description Subject Range Query Range Score Percent Strand
hbn-RA 1230 CG33152-PA 1..1230 17..1246 6150 100 Plus
repo-RA 1839 CG31240-PA 981..1082 544..645 225 81.4 Plus
CG34340-RF 1764 CG34340-PF 218..326 537..645 215 79.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:38:53
Subject Length Description Subject Range Query Range Score Percent Strand
hbn-RA 1798 CG33152-RA 323..1557 17..1251 6160 99.9 Plus
repo-RA 2996 CG31240-RA 1286..1387 544..645 225 81.4 Plus
CG34340-RF 2989 CG34340-RF 807..915 537..645 215 79.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:38:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20954909..20955463 1251..697 2760 99.8 Minus
2R 25286936 2R 20958539..20958846 480..173 1540 100 Minus
2R 25286936 2R 20960431..20960587 173..17 785 100 Minus
2R 25286936 2R 20958258..20958391 612..479 670 100 Minus
2R 25286936 2R 20955686..20955780 700..606 475 100 Minus
3R 32079331 3R 18237892..18237993 544..645 225 81.4 Plus
Blast to na_te.dros performed on 2014-11-27 13:38:51 has no hits.

BS04457.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:32:14 Download gff for BS04457.complete
Subject Subject Range Query Range Percent Splice Strand
hbn-RA 1..1230 17..1246 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:16:24 Download gff for BS04457.complete
Subject Subject Range Query Range Percent Splice Strand
hbn-RA 315..1561 11..1254 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:31:20 Download gff for BS04457.complete
Subject Subject Range Query Range Percent Splice Strand
hbn-RA 323..1551 17..1245 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:32:14 Download gff for BS04457.complete
Subject Subject Range Query Range Percent Splice Strand
hbn-RA 315..1561 11..1254 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:23:18 Download gff for BS04457.complete
Subject Subject Range Query Range Percent Splice Strand
hbn-RA 323..1551 17..1245 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:23:18 Download gff for BS04457.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20954915..20955461 699..1245 100 <- Minus
2R 20955688..20955775 611..698 100 <- Minus
2R 20958260..20958389 481..610 100 <- Minus
2R 20958539..20958845 174..480 100 <- Minus
2R 20960431..20960587 17..173 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:31:20 Download gff for BS04457.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16842420..16842966 699..1245 100 <- Minus
arm_2R 16843193..16843280 611..698 100 <- Minus
arm_2R 16845765..16845894 481..610 100 <- Minus
arm_2R 16846044..16846350 174..480 100 <- Minus
arm_2R 16847936..16848092 17..173 100   Minus

BS04457.pep Sequence

Translation from 16 to 1245

> BS04457.pep
MMTTTTSQHHQHHPIMPPAMRPAPVQESPVSRPRAVYSIDQILGNQHQIK
RSDTPSEVLITHPHHGHPHHIHHLHSSNSNGSNHLSHQQQQQHSQQQHHS
QQQQQQQQLQVQAKREDSPTNTDGGLDVDNDDELSSSLNNGHDLSDMERP
RKVRRSRTTFTTFQLHQLERAFEKTQYPDVFTREDLAMRLDLSEARVQVW
FQNRRAKWRKREKFMNQDKAGYLLPEQGLPEFPLGIPLPPHGLPGHPGSM
QSEFWPPHFALHQHFNPAAAAAAGLLPQHLMAPHYKLPNFHTLLSQYMGL
SNLNGIFGAGAAAAAAAASAGYPQNLSLHAGLSAMSQVSPPCSNSSPRES
PKLVPHPTPPHATPPAGGNGGGGLLTGGLISTAAQSPNSAAGASSNASTP
VSVVTKGED*

BS04457.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:50:34
Subject Length Description Subject Range Query Range Score Percent Strand
hbn-PA 409 CG33152-PA 1..409 1..409 2193 100 Plus
Rx-PB 904 CG10052-PB 460..736 87..365 332 34.7 Plus
al-PA 408 CG3935-PA 71..306 139..364 312 35.6 Plus
otp-PE 409 CG10036-PE 74..323 117..361 273 32.4 Plus
otp-PK 416 CG10036-PK 74..330 117..361 272 32.1 Plus