Clone Sequence Records
BS04458.3prime Sequence
962 bp (913 high quality bases) assembled on 2005-12-01
> BS04458.3prime
ATGGTCTAGAAAGCTTCTAGAACTGCAGCCGCTTCTTCTGGGCCAATCCA
TTGCCCCTCACCGTAGTCTCGACCAGCTTGCGCTTGAGCGCAGGCTTCGT
GTCGCCGGTCTGCGGATTGGCACCCTCCTTGGCGGCCAGAATGGCCGACG
GCATTGGCAACTTGGGACCCACTGTGGGCGCCGGTTTGTTAGCGAAATAC
GGCATGCTCAGTGCCTCGCGGCAGGACACACGCCGCAGCGGATTCATGGC
AAACAGGCGTTGCATCAGATGGATCAAGTCATTGCCCGCGGCGGTGAATA
TATTGTCCAATGGTGTGCCCGGAAAGTTGCGAAACTGCAGATAGTCGTGC
AGTTTGCTCAAATGCGGCCATTCAGCTTCCGTGGGTGTTCCCAGTGTGGA
AAAGATCCGTGTCAGCTGATCCAGATCCGAATCGCCCGGCATGAACGGCA
CTCGCAGCATAAGTTCAGCCAAAATGCAGCCAACTGCCCACATATCCACA
CCGGTGCCATATTGTCGGGCGCCAAAGAGCAATTCGGGCGAACGATACCA
GCGTGTGACCACGTGGTGCGTGTAAATGCGATTGGGCGAACCGAAGGACT
TGGCCAAACCGAAATCGCCAATCTTTAGGATGCCATCGCTGTTGACCAGC
AAATTGTTGGGCTTCAAATCGCGGTGCAGTATCCAATTGAGATGCAAATA
CTCCAGACCCTTTAGCGTCATGATGGCATAGGCCTTGATGTTCGCCTGCG
TTAATATAATCTTGTTATCCTTGATGATCACCTCCAGATCCGTGTCCATG
AAGTCGAAAACCAGCGAGACATTCGAAAGTTGACCGAAAACGTCCACCAA
GCCAATGATATTCTCGTGCTGCAGCTCCCTGCATATCTTGATCTCACGCA
GCGCTGTCCTGTTGATACCGTCGCGTGCATCCTCGCGCGATCCCCTCTTG
ATCTTCTTTACG
BS04458.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3319-PA | 1062 | Cdk7-RA | 201..1062 | 878..17 | 4285 | 99.8 | Minus |
CG3319-PA | 1062 | Cdk7-RA | 117..196 | 962..883 | 375 | 98.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:31:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cdk7-RA | 1448 | CG3319-RA | 206..1151 | 962..17 | 4655 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:31:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5307762..5308707 | 17..962 | 4640 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:31:29 has no hits.
BS04458.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:48:56 Download gff for
BS04458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdk7-PA | 117..1062 | 17..962 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:10:35 Download gff for
BS04458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3319-PA | 117..1062 | 17..962 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:01:23 Download gff for
BS04458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdk7-RA | 206..1151 | 17..962 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:04:39 Download gff for
BS04458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdk7-RA | 206..1151 | 17..962 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:04:39 Download gff for
BS04458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5307762..5308707 | 17..962 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:01:23 Download gff for
BS04458.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5201795..5202740 | 17..962 | 99 | | Plus |
BS04458.5prime Sequence
832 bp (828 high quality bases) assembled on 2005-12-01
> BS04458.5prime
GAAGTTATCAGTCGACATGCTGCCCAATGCGAATGACAAAACGGAACGCT
ATGCCAAGCTATCCTTCCTCGGCGAGGGTCAGTTTGCCACAGTTTACAAG
GCGCGCGACACGGTGACCAACCAAATTGTGGCCGTAAAGAAGATCAAGAA
GGGATCGCGCGAGGATGCACGCGACGGTATCAACAGGACAGCGCTGCGTG
AGATCAAGATATTGCAGGAGCTGCAGCACGAGAATATCATTGGCTTGGTG
GACGTTTTCGGTCAACTTTCGAATGTCTCGCTGGTTTTCGACTTCATGGA
CACGGATCTGGAGGTGATCATCAAGGATAACAAGATTATATTAACGCAGG
CGAACATCAAGGCCTATGCCATCATGACGCTAAAGGGTCTGGAGTATTTG
CATCTCAATTGGATACTGCACCGCGATTTGAAGCCCAACAATTTGCTGGT
CAACAGCGATGGCATCCTAAAGATTGGCGATTTCGGTTTGGCCAAGTCCT
TCGGTTCGCCCAATCGCATTTACACGCACCACGTGGTCACACGCTGGTAT
CGTTCGCCCGAATTGCTCTTTGGCGCCCGACAATATGGCACCGGTGTGGA
TATGTGGGCAGTTGGCTGCATTTTGGCTGAACTTATGCTGCGAGTGCCGT
TCATGCCGGGCGATTCGGATCTGGATCAGCTGACACGGATCTTTTCCACA
CTGGGAACACCCACGGAAGCTGAATGGCCGCATTTGAGCAAACTGCACGA
CTATCTGCAGTTTCGCAACTTTCCGGGCACACCATTGGACAATATATTCA
CCGCCGCGGGCAATGACTTGATCCATCTGATG
BS04458.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3319-PA | 1062 | Cdk7-RA | 1..816 | 17..832 | 4080 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:18:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cdk7-RA | 1448 | CG3319-RA | 90..905 | 17..832 | 4080 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:18:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5308008..5308760 | 832..80 | 3765 | 100 | Minus |
X | 23542271 | X | 5308829..5308894 | 82..17 | 330 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 12:18:47 has no hits.
BS04458.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:48:57 Download gff for
BS04458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdk7-PA | 1..816 | 17..832 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:10:36 Download gff for
BS04458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3319-PA | 1..816 | 17..832 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:47:58 Download gff for
BS04458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdk7-RA | 90..905 | 17..832 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:54:35 Download gff for
BS04458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdk7-RA | 90..905 | 17..832 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:54:35 Download gff for
BS04458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5308008..5308757 | 83..832 | 100 | <- | Minus |
X | 5308829..5308894 | 17..82 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:47:58 Download gff for
BS04458.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5202041..5202790 | 83..832 | 100 | <- | Minus |
arm_X | 5202862..5202927 | 17..82 | 100 | | Minus |
BS04458.complete Sequence
1094 bp (1094 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ634947
> BS04458.complete
GAAGTTATCAGTCGACATGCTGCCCAATGCGAATGACAAAACGGAACGCT
ATGCCAAGCTATCCTTCCTCGGCGAGGGTCAGTTTGCCACAGTTTACAAG
GCGCGCGACACGGTGACCAACCAAATTGTGGCCGTAAAGAAGATCAAGAA
GGGATCGCGCGAGGATGCACGCGACGGTATCAACAGGACAGCGCTGCGTG
AGATCAAGATATTGCAGGAGCTGCAGCACGAGAATATCATTGGCTTGGTG
GACGTTTTCGGTCAACTTTCGAATGTCTCGCTGGTTTTCGACTTCATGGA
CACGGATCTGGAGGTGATCATCAAGGATAACAAGATTATATTAACGCAGG
CGAACATCAAGGCCTATGCCATCATGACGCTAAAGGGTCTGGAGTATTTG
CATCTCAATTGGATACTGCACCGCGATTTGAAGCCCAACAATTTGCTGGT
CAACAGCGATGGCATCCTAAAGATTGGCGATTTCGGTTTGGCCAAGTCCT
TCGGTTCGCCCAATCGCATTTACACGCACCACGTGGTCACACGCTGGTAT
CGTTCGCCCGAATTGCTCTTTGGCGCCCGACAATATGGCACCGGTGTGGA
TATGTGGGCAGTTGGCTGCATTTTGGCTGAACTTATGCTGCGAGTGCCGT
TCATGCCGGGCGATTCGGATCTGGATCAGCTGACACGGATCTTTTCCACA
CTGGGAACACCCACGGAAGCTGAATGGCCGCATTTGAGCAAACTGCACGA
CTATCTGCAGTTTCGCAACTTTCCGGGCACACCATTGGACAATATATTCA
CCGCCGCGGGCAATGACTTGATCCATCTGATGCAACGCCTGTTTGCCATG
AATCCGCTGCGGCGTGTGTCCTGCCGCGAGGCACTGAGCATGCCGTATTT
CGCTAACAAACCGGCGCCCACAGTGGGTCCCAAGTTGCCAATGCCGTCGG
CCATTCTGGCCGCCAAGGAGGGTGCCAATCCGCAGACCGGCGACACGAAG
CCTGCGCTCAAGCGCAAGCTGGTCGAGACTACGGTGAGGGGCAATGGATT
GGCCCAGAAGAAGCGGCTGCAGTTCTAGAAGCTTTCTAGACCAT
BS04458.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:27:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cdk7-RA | 1062 | CG3319-PA | 1..1062 | 17..1078 | 5295 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:27:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cdk7-RA | 1448 | CG3319-RA | 90..1151 | 17..1078 | 5295 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:26:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5307762..5308760 | 1078..80 | 4980 | 99.9 | Minus |
X | 23542271 | X | 5308829..5308894 | 82..17 | 330 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:27:00 has no hits.
BS04458.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:32:15 Download gff for
BS04458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdk7-RA | 1..1062 | 17..1078 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:16:25 Download gff for
BS04458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdk7-RA | 35..1096 | 17..1078 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:41:14 Download gff for
BS04458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdk7-RA | 90..1151 | 17..1078 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:32:15 Download gff for
BS04458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdk7-RA | 35..1096 | 17..1078 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:08:01 Download gff for
BS04458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdk7-RA | 90..1151 | 17..1078 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:08:01 Download gff for
BS04458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5307762..5308757 | 83..1078 | 99 | <- | Minus |
X | 5308829..5308894 | 17..82 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:41:14 Download gff for
BS04458.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5201795..5202790 | 83..1078 | 99 | <- | Minus |
arm_X | 5202862..5202927 | 17..82 | 100 | | Minus |
BS04458.pep Sequence
Translation from 16 to 1077
> BS04458.pep
MLPNANDKTERYAKLSFLGEGQFATVYKARDTVTNQIVAVKKIKKGSRED
ARDGINRTALREIKILQELQHENIIGLVDVFGQLSNVSLVFDFMDTDLEV
IIKDNKIILTQANIKAYAIMTLKGLEYLHLNWILHRDLKPNNLLVNSDGI
LKIGDFGLAKSFGSPNRIYTHHVVTRWYRSPELLFGARQYGTGVDMWAVG
CILAELMLRVPFMPGDSDLDQLTRIFSTLGTPTEAEWPHLSKLHDYLQFR
NFPGTPLDNIFTAAGNDLIHLMQRLFAMNPLRRVSCREALSMPYFANKPA
PTVGPKLPMPSAILAAKEGANPQTGDTKPALKRKLVETTVRGNGLAQKKR
LQF*
BS04458.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:30:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cdk7-PA | 353 | CG3319-PA | 1..353 | 1..353 | 1831 | 100 | Plus |
Cdk2-PC | 314 | CG10498-PC | 6..289 | 10..297 | 605 | 41.2 | Plus |
Cdk2-PB | 314 | CG10498-PB | 6..289 | 10..297 | 605 | 41.2 | Plus |
Cdk2-PA | 314 | CG10498-PA | 6..289 | 10..297 | 605 | 41.2 | Plus |
Cdk1-PA | 297 | CG5363-PA | 2..287 | 10..295 | 592 | 40.5 | Plus |