Clone BS04458 Report

Search the DGRC for BS04458

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:44
Well:58
Vector:pDNR-Dual
Associated Gene/TranscriptCdk7-RA
Protein status:BS04458.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04458.3prime Sequence

962 bp (913 high quality bases) assembled on 2005-12-01

> BS04458.3prime
ATGGTCTAGAAAGCTTCTAGAACTGCAGCCGCTTCTTCTGGGCCAATCCA
TTGCCCCTCACCGTAGTCTCGACCAGCTTGCGCTTGAGCGCAGGCTTCGT
GTCGCCGGTCTGCGGATTGGCACCCTCCTTGGCGGCCAGAATGGCCGACG
GCATTGGCAACTTGGGACCCACTGTGGGCGCCGGTTTGTTAGCGAAATAC
GGCATGCTCAGTGCCTCGCGGCAGGACACACGCCGCAGCGGATTCATGGC
AAACAGGCGTTGCATCAGATGGATCAAGTCATTGCCCGCGGCGGTGAATA
TATTGTCCAATGGTGTGCCCGGAAAGTTGCGAAACTGCAGATAGTCGTGC
AGTTTGCTCAAATGCGGCCATTCAGCTTCCGTGGGTGTTCCCAGTGTGGA
AAAGATCCGTGTCAGCTGATCCAGATCCGAATCGCCCGGCATGAACGGCA
CTCGCAGCATAAGTTCAGCCAAAATGCAGCCAACTGCCCACATATCCACA
CCGGTGCCATATTGTCGGGCGCCAAAGAGCAATTCGGGCGAACGATACCA
GCGTGTGACCACGTGGTGCGTGTAAATGCGATTGGGCGAACCGAAGGACT
TGGCCAAACCGAAATCGCCAATCTTTAGGATGCCATCGCTGTTGACCAGC
AAATTGTTGGGCTTCAAATCGCGGTGCAGTATCCAATTGAGATGCAAATA
CTCCAGACCCTTTAGCGTCATGATGGCATAGGCCTTGATGTTCGCCTGCG
TTAATATAATCTTGTTATCCTTGATGATCACCTCCAGATCCGTGTCCATG
AAGTCGAAAACCAGCGAGACATTCGAAAGTTGACCGAAAACGTCCACCAA
GCCAATGATATTCTCGTGCTGCAGCTCCCTGCATATCTTGATCTCACGCA
GCGCTGTCCTGTTGATACCGTCGCGTGCATCCTCGCGCGATCCCCTCTTG
ATCTTCTTTACG

BS04458.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG3319-PA 1062 Cdk7-RA 201..1062 878..17 4285 99.8 Minus
CG3319-PA 1062 Cdk7-RA 117..196 962..883 375 98.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:31:30
Subject Length Description Subject Range Query Range Score Percent Strand
Cdk7-RA 1448 CG3319-RA 206..1151 962..17 4655 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:31:28
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5307762..5308707 17..962 4640 99.4 Plus
Blast to na_te.dros performed on 2015-02-10 18:31:29 has no hits.

BS04458.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:48:56 Download gff for BS04458.3prime
Subject Subject Range Query Range Percent Splice Strand
Cdk7-PA 117..1062 17..962 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:10:35 Download gff for BS04458.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3319-PA 117..1062 17..962 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:01:23 Download gff for BS04458.3prime
Subject Subject Range Query Range Percent Splice Strand
Cdk7-RA 206..1151 17..962 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:04:39 Download gff for BS04458.3prime
Subject Subject Range Query Range Percent Splice Strand
Cdk7-RA 206..1151 17..962 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:04:39 Download gff for BS04458.3prime
Subject Subject Range Query Range Percent Splice Strand
X 5307762..5308707 17..962 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:01:23 Download gff for BS04458.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5201795..5202740 17..962 99   Plus

BS04458.5prime Sequence

832 bp (828 high quality bases) assembled on 2005-12-01

> BS04458.5prime
GAAGTTATCAGTCGACATGCTGCCCAATGCGAATGACAAAACGGAACGCT
ATGCCAAGCTATCCTTCCTCGGCGAGGGTCAGTTTGCCACAGTTTACAAG
GCGCGCGACACGGTGACCAACCAAATTGTGGCCGTAAAGAAGATCAAGAA
GGGATCGCGCGAGGATGCACGCGACGGTATCAACAGGACAGCGCTGCGTG
AGATCAAGATATTGCAGGAGCTGCAGCACGAGAATATCATTGGCTTGGTG
GACGTTTTCGGTCAACTTTCGAATGTCTCGCTGGTTTTCGACTTCATGGA
CACGGATCTGGAGGTGATCATCAAGGATAACAAGATTATATTAACGCAGG
CGAACATCAAGGCCTATGCCATCATGACGCTAAAGGGTCTGGAGTATTTG
CATCTCAATTGGATACTGCACCGCGATTTGAAGCCCAACAATTTGCTGGT
CAACAGCGATGGCATCCTAAAGATTGGCGATTTCGGTTTGGCCAAGTCCT
TCGGTTCGCCCAATCGCATTTACACGCACCACGTGGTCACACGCTGGTAT
CGTTCGCCCGAATTGCTCTTTGGCGCCCGACAATATGGCACCGGTGTGGA
TATGTGGGCAGTTGGCTGCATTTTGGCTGAACTTATGCTGCGAGTGCCGT
TCATGCCGGGCGATTCGGATCTGGATCAGCTGACACGGATCTTTTCCACA
CTGGGAACACCCACGGAAGCTGAATGGCCGCATTTGAGCAAACTGCACGA
CTATCTGCAGTTTCGCAACTTTCCGGGCACACCATTGGACAATATATTCA
CCGCCGCGGGCAATGACTTGATCCATCTGATG

BS04458.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG3319-PA 1062 Cdk7-RA 1..816 17..832 4080 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:18:50
Subject Length Description Subject Range Query Range Score Percent Strand
Cdk7-RA 1448 CG3319-RA 90..905 17..832 4080 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:18:44
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5308008..5308760 832..80 3765 100 Minus
X 23542271 X 5308829..5308894 82..17 330 100 Minus
Blast to na_te.dros performed on 2015-02-02 12:18:47 has no hits.

BS04458.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:48:57 Download gff for BS04458.5prime
Subject Subject Range Query Range Percent Splice Strand
Cdk7-PA 1..816 17..832 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:10:36 Download gff for BS04458.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3319-PA 1..816 17..832 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:47:58 Download gff for BS04458.5prime
Subject Subject Range Query Range Percent Splice Strand
Cdk7-RA 90..905 17..832 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:54:35 Download gff for BS04458.5prime
Subject Subject Range Query Range Percent Splice Strand
Cdk7-RA 90..905 17..832 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:54:35 Download gff for BS04458.5prime
Subject Subject Range Query Range Percent Splice Strand
X 5308008..5308757 83..832 100 <- Minus
X 5308829..5308894 17..82 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:47:58 Download gff for BS04458.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5202041..5202790 83..832 100 <- Minus
arm_X 5202862..5202927 17..82 100   Minus

BS04458.complete Sequence

1094 bp (1094 high quality bases) assembled on 2005-09-13

GenBank Submission: FJ634947

> BS04458.complete
GAAGTTATCAGTCGACATGCTGCCCAATGCGAATGACAAAACGGAACGCT
ATGCCAAGCTATCCTTCCTCGGCGAGGGTCAGTTTGCCACAGTTTACAAG
GCGCGCGACACGGTGACCAACCAAATTGTGGCCGTAAAGAAGATCAAGAA
GGGATCGCGCGAGGATGCACGCGACGGTATCAACAGGACAGCGCTGCGTG
AGATCAAGATATTGCAGGAGCTGCAGCACGAGAATATCATTGGCTTGGTG
GACGTTTTCGGTCAACTTTCGAATGTCTCGCTGGTTTTCGACTTCATGGA
CACGGATCTGGAGGTGATCATCAAGGATAACAAGATTATATTAACGCAGG
CGAACATCAAGGCCTATGCCATCATGACGCTAAAGGGTCTGGAGTATTTG
CATCTCAATTGGATACTGCACCGCGATTTGAAGCCCAACAATTTGCTGGT
CAACAGCGATGGCATCCTAAAGATTGGCGATTTCGGTTTGGCCAAGTCCT
TCGGTTCGCCCAATCGCATTTACACGCACCACGTGGTCACACGCTGGTAT
CGTTCGCCCGAATTGCTCTTTGGCGCCCGACAATATGGCACCGGTGTGGA
TATGTGGGCAGTTGGCTGCATTTTGGCTGAACTTATGCTGCGAGTGCCGT
TCATGCCGGGCGATTCGGATCTGGATCAGCTGACACGGATCTTTTCCACA
CTGGGAACACCCACGGAAGCTGAATGGCCGCATTTGAGCAAACTGCACGA
CTATCTGCAGTTTCGCAACTTTCCGGGCACACCATTGGACAATATATTCA
CCGCCGCGGGCAATGACTTGATCCATCTGATGCAACGCCTGTTTGCCATG
AATCCGCTGCGGCGTGTGTCCTGCCGCGAGGCACTGAGCATGCCGTATTT
CGCTAACAAACCGGCGCCCACAGTGGGTCCCAAGTTGCCAATGCCGTCGG
CCATTCTGGCCGCCAAGGAGGGTGCCAATCCGCAGACCGGCGACACGAAG
CCTGCGCTCAAGCGCAAGCTGGTCGAGACTACGGTGAGGGGCAATGGATT
GGCCCAGAAGAAGCGGCTGCAGTTCTAGAAGCTTTCTAGACCAT

BS04458.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:27:01
Subject Length Description Subject Range Query Range Score Percent Strand
Cdk7-RA 1062 CG3319-PA 1..1062 17..1078 5295 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:27:02
Subject Length Description Subject Range Query Range Score Percent Strand
Cdk7-RA 1448 CG3319-RA 90..1151 17..1078 5295 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:26:59
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5307762..5308760 1078..80 4980 99.9 Minus
X 23542271 X 5308829..5308894 82..17 330 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:27:00 has no hits.

BS04458.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:32:15 Download gff for BS04458.complete
Subject Subject Range Query Range Percent Splice Strand
Cdk7-RA 1..1062 17..1078 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:16:25 Download gff for BS04458.complete
Subject Subject Range Query Range Percent Splice Strand
Cdk7-RA 35..1096 17..1078 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:41:14 Download gff for BS04458.complete
Subject Subject Range Query Range Percent Splice Strand
Cdk7-RA 90..1151 17..1078 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:32:15 Download gff for BS04458.complete
Subject Subject Range Query Range Percent Splice Strand
Cdk7-RA 35..1096 17..1078 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:08:01 Download gff for BS04458.complete
Subject Subject Range Query Range Percent Splice Strand
Cdk7-RA 90..1151 17..1078 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:08:01 Download gff for BS04458.complete
Subject Subject Range Query Range Percent Splice Strand
X 5307762..5308757 83..1078 99 <- Minus
X 5308829..5308894 17..82 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:41:14 Download gff for BS04458.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5201795..5202790 83..1078 99 <- Minus
arm_X 5202862..5202927 17..82 100   Minus

BS04458.pep Sequence

Translation from 16 to 1077

> BS04458.pep
MLPNANDKTERYAKLSFLGEGQFATVYKARDTVTNQIVAVKKIKKGSRED
ARDGINRTALREIKILQELQHENIIGLVDVFGQLSNVSLVFDFMDTDLEV
IIKDNKIILTQANIKAYAIMTLKGLEYLHLNWILHRDLKPNNLLVNSDGI
LKIGDFGLAKSFGSPNRIYTHHVVTRWYRSPELLFGARQYGTGVDMWAVG
CILAELMLRVPFMPGDSDLDQLTRIFSTLGTPTEAEWPHLSKLHDYLQFR
NFPGTPLDNIFTAAGNDLIHLMQRLFAMNPLRRVSCREALSMPYFANKPA
PTVGPKLPMPSAILAAKEGANPQTGDTKPALKRKLVETTVRGNGLAQKKR
LQF*

BS04458.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:30:11
Subject Length Description Subject Range Query Range Score Percent Strand
Cdk7-PA 353 CG3319-PA 1..353 1..353 1831 100 Plus
Cdk2-PC 314 CG10498-PC 6..289 10..297 605 41.2 Plus
Cdk2-PB 314 CG10498-PB 6..289 10..297 605 41.2 Plus
Cdk2-PA 314 CG10498-PA 6..289 10..297 605 41.2 Plus
Cdk1-PA 297 CG5363-PA 2..287 10..295 592 40.5 Plus