Clone Sequence Records
BS04459.3prime Sequence
876 bp (767 high quality bases) assembled on 2005-12-01
> BS04459.3prime
ATGGTCTAGAAAGCTTTCAAAATCCAAAGTATGGATAGGTTGGTGCAGTG
GTCATCATTGAGCTCTTCTGATCAACCTGATGATGGTAGCCGCTAATATG
GTTGCCTGCGGCAGAAGCGGGAGGGAAAAAGGAACCCGCAAAGTTGTAGC
TGTCCCACGTGGAGGGGTGGTGAGAGCCCGAAGCGGCGGCAGATGCAAAC
TGGGATCTCAGCTGCTCCGAGGATGTAGCAGGAGTCTGCGGCATTGAATA
GGCAGCCGATGGGTAAGTAGCATTGCTCGATCCCACGCCGTAAGTGGAGG
TCATAAACTCGCTTCCAGTTCCTGGCTGCTGCGCTTGCGTCTGTACGGGA
CTGTGGGCGGCAGAGCTGGTACCCGAGGTGCTGCTGGCGGGGGACATGGA
TGCAACCGATCCACCATAGGCAGCATGATTTTCATAGGCTCCGGATGATG
GCCAGCTCTGTGAACTGTAAAGGCTCATTCCCATGTTTGGAGCAGGGGCG
GCACTGGTAGTGGGAGTTGCGCCAAAAGAAGTAGATGTGGGAGCAAAGCT
AGGCACCTGCTGGGTGTTCAGTTGCTTGCGCAGACGAGCACGGCGATTAG
AGAACCAAACTTGGACACGGGCCTCGGTCAATCCCGTGCTCTGGGCCAAC
TCCTCCCGGGTGTAGACATCGGGGTACTGTGTACGGGCGAAGATGCGCTC
TAGGGCGTCGATCTGGTCGTTGGAGAATGTCGTCCGGGAACGCCTTTGTT
TCCTTTTTAACTGCACACTGGGCTCGGCATCGTCCTCGCTCTCATCCTCG
CTTCCCACAGAACCAGCGCCTCCGCCGAGGATGCCGTCGATGCTGTGGGA
GGTCCCTGATCCGGAGGATCCTCGCA
BS04459.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3388-PA | 1284 | gsb-RA | 425..1284 | 876..17 | 4275 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:28:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gsb-RA | 1649 | CG3388-RA | 609..1468 | 876..17 | 4285 | 99.9 | Minus |
gsb-n-RA | 2237 | CG2692-RA | 876..1042 | 739..573 | 220 | 75.4 | Minus |
prd-RB | 2459 | CG6716-RB | 991..1110 | 692..573 | 180 | 77.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 13:28:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 25063603..25064462 | 876..17 | 4285 | 99.9 | Minus |
2R | 25286936 | 2R | 25041692..25041858 | 573..739 | 220 | 75.4 | Plus |
Blast to na_te.dros performed on 2015-02-06 13:28:37 has no hits.
BS04459.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:48:58 Download gff for
BS04459.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3388-PA | 426..1284 | 17..875 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:10:38 Download gff for
BS04459.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3388-PA | 426..1284 | 17..875 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:53:12 Download gff for
BS04459.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gsb-RA | 610..1475 | 9..875 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 14:00:04 Download gff for
BS04459.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gsb-RA | 610..1475 | 9..875 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 14:00:04 Download gff for
BS04459.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 25063604..25064469 | 9..875 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:53:12 Download gff for
BS04459.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20951127..20951992 | 9..875 | 99 | | Minus |
BS04459.5prime Sequence
873 bp (673 high quality bases) assembled on 2005-12-01
> BS04459.5prime
GAAGTTATCAGTCGACATGGCTGTTTCGGCTCTCAACATGACACCCTACT
TTGGCGGATATCCCTTTCAAGGACAAGGTCGTGTCAACCAGTTGGGTGGC
GTCTTCATCAACGGCCGTCCGTTGCCCAATCACATCCGTCGCCAAATCGT
GGAGATGGCAGCAGCTGGAGTCCGTCCCTGTGTCATCTCCCGCCAGCTGC
GCGTCTCTCATGGCTGCGTCTCAAAGATTCTAAACCGCTTCCAGGAGACT
GGCTCCATTCGGCCCGGAGTAATCGGTGGCAGCAAGCCCCGTGTAGCCAC
GCCAGACATTGAGTCCAGAATCGAGGAACTTAAACAGTCGCAGCCCGGTA
TTTTTAGTTGGGAAATCCGCGCCAAGCTAATCGAAGCGGGAGTCTGCGAC
AAGCAAAATGCTCCGTCGGTGAGCTCTATTTCGCGTCTTCTGCGAGGATC
CTCCGGATCAGGGACCTCCCACAGCATCGACGGCATCCTCGGCGGAGGCG
CTGGTTCTGTGGGAAGCGAGGATGAGAGCGAGGACGATGCCGAGCCCAGT
GTGCAGTTAAAAAGGAAACAAAGGCGTTCCCGGACGACATTCTCCAACGA
CCAGATCGACGCCCTAGAGCGCATCTTCGCCCGTACACAGTACCCCGATG
TCTACACCCGGGAGGAGTTGGCCCAGAGCACGGGATTGACCGAGGCCCGT
GTCCAAGTTTGGTTCTCTAATCGCCGTGCTCGTCTGCGCAAGCAACTGAA
CACCCAGCAGGTGCCTAGCTTTGCTCCCACATCTACTTCTTTTGGCGCAA
CTCCCACTACCAGTGCCGCCCCTGCTCCAAACATGGGAATGAGCCTTTAC
AGTTCACAGAGCTGGCCATCATC
BS04459.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3388-PA | 1284 | gsb-RA | 1..857 | 17..873 | 4285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:15:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gsb-RA | 1649 | CG3388-RA | 185..1041 | 17..873 | 4285 | 100 | Plus |
gsb-n-RA | 2237 | CG2692-RA | 369..589 | 59..279 | 460 | 81.6 | Plus |
prd-RB | 2459 | CG6716-RB | 401..633 | 95..327 | 415 | 78.5 | Plus |
gsb-n-RA | 2237 | CG2692-RA | 876..1042 | 578..744 | 220 | 75.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:15:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 25063228..25064035 | 66..873 | 4025 | 99.9 | Plus |
2L | 23513712 | 2L | 12084821..12085053 | 327..95 | 415 | 78.5 | Minus |
2R | 25286936 | 2R | 25051416..25051625 | 279..70 | 405 | 79.5 | Minus |
2R | 25286936 | 2R | 25062148..25062203 | 17..72 | 280 | 100 | Plus |
2R | 25286936 | 2R | 25041692..25041858 | 744..578 | 220 | 75.4 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:15:54 has no hits.
BS04459.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:48:59 Download gff for
BS04459.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3388-PA | 1..857 | 17..873 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:10:39 Download gff for
BS04459.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3388-PA | 1..857 | 17..873 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:30:34 Download gff for
BS04459.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gsb-RA | 180..1041 | 10..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:22:27 Download gff for
BS04459.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gsb-RA | 180..1041 | 10..873 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:22:27 Download gff for
BS04459.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 25062143..25062202 | 10..71 | 95 | -> | Plus |
2R | 25063234..25064035 | 72..873 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:30:34 Download gff for
BS04459.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20949666..20949725 | 10..71 | 95 | -> | Plus |
arm_2R | 20950757..20951558 | 72..873 | 100 | | Plus |
BS04459.complete Sequence
1316 bp (1316 high quality bases) assembled on 2005-09-13
> BS04459.complete
GAAGTTATCAGTCGACATGGCTGTTTCGGCTCTCAACATGACACCCTACT
TTGGCGGATATCCCTTTCAAGGACAAGGTCGTGTCAACCAGTTGGGTGGC
GTCTTCATCAACGGCCGTCCGTTGCCCAATCACATCCGTCGCCAAATCGT
GGAGATGGCAGCAGCTGGAGTCCGTCCCTGTGTCATCTCCCGCCAGCTGC
GCGTCTCTCATGGCTGCGTCTCAAAGATTCTAAACCGCTTCCAGGAGACT
GGCTCCATTCGGCCCGGAGTAATCGGTGGCAGCAAGCCCCGTGTAGCCAC
GCCAGACATTGAGTCCAGAATCGAGGAACTTAAACAGTCGCAGCCCGGTA
TTTTTAGTTGGGAAATCCGCGCCAAGCTAATCGAAGCGGGAGTCTGCGAC
AAGCAAAATGCTCCGTCGGTGAGCTCTATTTCGCGTCTTCTGCGAGGATC
CTCCGGATCAGGGACCTCCCACAGCATCGACGGCATCCTCGGCGGAGGCG
CTGGTTCTGTGGGAAGCGAGGATGAGAGCGAGGACGATGCCGAGCCCAGT
GTGCAGTTAAAAAGGAAACAAAGGCGTTCCCGGACGACATTCTCCAACGA
CCAGATCGACGCCCTAGAGCGCATCTTCGCCCGTACACAGTACCCCGATG
TCTACACCCGGGAGGAGTTGGCCCAGAGCACGGGATTGACCGAGGCCCGT
GTCCAAGTTTGGTTCTCTAATCGCCGTGCTCGTCTGCGCAAGCAACTGAA
CACCCAGCAGGTGCCTAGCTTTGCTCCCACATCTACTTCTTTTGGCGCAA
CTCCCACTACCAGTGCCGCCCCTGCTCCAAACATGGGAATGAGCCTTTAC
AGTTCACAGAGCTGGCCATCATCCGGAGCCTATGAAAATCATGCTGCCTA
TGGTGGATCGGTTGCATCCATGTCCCCCGCCAGCAGCACCTCGGGTACCA
GCTCTGCCGCCCACAGTCCCGTACAGACGCAAGCGCAGCAGCCAGGAACT
GGAAGCGAGTTTATGACCTCCACTTACGGCGTGGGATCGAGCAATGCTAC
TTACCCATCGGCTGCCTATTCAATGCCGCAGACTCCTGCTACATCCTCGG
AGCAGCTGAGATCCCAGTTTGCATCTGCCGCCGCTTCGGGCTCTCACCAC
CCCTCCACGTGGGACAGCTACAACTTTGCGGGTTCCTTTTTCCCTCCCGC
TTCTGCCGCAGGCAACCATATTAGCGGCTACCATCATCAGGTTGATCAGA
AGAGCTCAATGATGACCACTGCACCAACCTATCCATACTTTGGATTTTGA
AAGCTTTCTAGACCAT
BS04459.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:42:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gsb-RA | 1284 | CG3388-PA | 1..1284 | 17..1300 | 6405 | 99.9 | Plus |
gsb-n-RA | 1350 | CG2692-PA | 46..266 | 59..279 | 460 | 80.5 | Plus |
prd-RB | 1842 | CG6716-PB | 103..335 | 95..327 | 415 | 78.5 | Plus |
gsb-n-RA | 1350 | CG2692-PA | 553..719 | 578..744 | 220 | 75.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:42:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gsb-RA | 1649 | CG3388-RA | 185..1468 | 17..1300 | 6405 | 99.9 | Plus |
gsb-n-RA | 2237 | CG2692-RA | 369..589 | 59..279 | 460 | 80.5 | Plus |
prd-RB | 2459 | CG6716-RB | 401..633 | 95..327 | 415 | 78.5 | Plus |
gsb-n-RA | 2237 | CG2692-RA | 876..1042 | 578..744 | 220 | 75.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:42:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 25063228..25064462 | 66..1300 | 6145 | 99.8 | Plus |
2L | 23513712 | 2L | 12084821..12085053 | 327..95 | 415 | 78.5 | Minus |
2R | 25286936 | 2R | 25051416..25051625 | 279..70 | 405 | 79.5 | Minus |
2R | 25286936 | 2R | 25062148..25062203 | 17..72 | 280 | 100 | Plus |
2R | 25286936 | 2R | 25041692..25041858 | 744..578 | 220 | 75.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:42:46 has no hits.
BS04459.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:32:16 Download gff for
BS04459.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gsb-RA | 1..1284 | 17..1300 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:16:27 Download gff for
BS04459.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gsb-RA | 164..1452 | 10..1300 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:30:05 Download gff for
BS04459.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gsb-RA | 185..1467 | 17..1299 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:32:16 Download gff for
BS04459.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gsb-RA | 164..1452 | 10..1300 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:36:40 Download gff for
BS04459.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gsb-RA | 185..1467 | 17..1299 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:36:40 Download gff for
BS04459.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 25062148..25062202 | 17..71 | 100 | -> | Plus |
2R | 25063234..25064461 | 72..1299 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:30:05 Download gff for
BS04459.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20949671..20949725 | 17..71 | 100 | -> | Plus |
arm_2R | 20950757..20951984 | 72..1299 | 99 | | Plus |
BS04459.pep Sequence
Translation from 16 to 1299
> BS04459.pep
MAVSALNMTPYFGGYPFQGQGRVNQLGGVFINGRPLPNHIRRQIVEMAAA
GVRPCVISRQLRVSHGCVSKILNRFQETGSIRPGVIGGSKPRVATPDIES
RIEELKQSQPGIFSWEIRAKLIEAGVCDKQNAPSVSSISRLLRGSSGSGT
SHSIDGILGGGAGSVGSEDESEDDAEPSVQLKRKQRRSRTTFSNDQIDAL
ERIFARTQYPDVYTREELAQSTGLTEARVQVWFSNRRARLRKQLNTQQVP
SFAPTSTSFGATPTTSAAPAPNMGMSLYSSQSWPSSGAYENHAAYGGSVA
SMSPASSTSGTSSAAHSPVQTQAQQPGTGSEFMTSTYGVGSSNATYPSAA
YSMPQTPATSSEQLRSQFASAAASGSHHPSTWDSYNFAGSFFPPASAAGN
HISGYHHQVDQKSSMMTTAPTYPYFGF*
BS04459.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:41:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gsb-PA | 427 | CG3388-PA | 1..427 | 1..427 | 2202 | 99.8 | Plus |
gsb-n-PA | 449 | CG2692-PA | 5..310 | 4..328 | 892 | 58.3 | Plus |
prd-PB | 613 | CG6716-PB | 5..346 | 2..313 | 859 | 55.6 | Plus |
prd-PA | 590 | CG6716-PA | 4..323 | 19..313 | 847 | 57.5 | Plus |
Poxm-PC | 370 | CG9610-PC | 11..162 | 21..171 | 495 | 63.8 | Plus |