Clone BS04459 Report

Search the DGRC for BS04459

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:44
Well:59
Vector:pDNR-Dual
Associated Gene/Transcriptobsolete transcript model
Protein status:BS04459.pep: validated not full length
Sequenced Size:16

Clone Sequence Records

BS04459.3prime Sequence

876 bp (767 high quality bases) assembled on 2005-12-01

> BS04459.3prime
ATGGTCTAGAAAGCTTTCAAAATCCAAAGTATGGATAGGTTGGTGCAGTG
GTCATCATTGAGCTCTTCTGATCAACCTGATGATGGTAGCCGCTAATATG
GTTGCCTGCGGCAGAAGCGGGAGGGAAAAAGGAACCCGCAAAGTTGTAGC
TGTCCCACGTGGAGGGGTGGTGAGAGCCCGAAGCGGCGGCAGATGCAAAC
TGGGATCTCAGCTGCTCCGAGGATGTAGCAGGAGTCTGCGGCATTGAATA
GGCAGCCGATGGGTAAGTAGCATTGCTCGATCCCACGCCGTAAGTGGAGG
TCATAAACTCGCTTCCAGTTCCTGGCTGCTGCGCTTGCGTCTGTACGGGA
CTGTGGGCGGCAGAGCTGGTACCCGAGGTGCTGCTGGCGGGGGACATGGA
TGCAACCGATCCACCATAGGCAGCATGATTTTCATAGGCTCCGGATGATG
GCCAGCTCTGTGAACTGTAAAGGCTCATTCCCATGTTTGGAGCAGGGGCG
GCACTGGTAGTGGGAGTTGCGCCAAAAGAAGTAGATGTGGGAGCAAAGCT
AGGCACCTGCTGGGTGTTCAGTTGCTTGCGCAGACGAGCACGGCGATTAG
AGAACCAAACTTGGACACGGGCCTCGGTCAATCCCGTGCTCTGGGCCAAC
TCCTCCCGGGTGTAGACATCGGGGTACTGTGTACGGGCGAAGATGCGCTC
TAGGGCGTCGATCTGGTCGTTGGAGAATGTCGTCCGGGAACGCCTTTGTT
TCCTTTTTAACTGCACACTGGGCTCGGCATCGTCCTCGCTCTCATCCTCG
CTTCCCACAGAACCAGCGCCTCCGCCGAGGATGCCGTCGATGCTGTGGGA
GGTCCCTGATCCGGAGGATCCTCGCA

BS04459.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG3388-PA 1284 gsb-RA 425..1284 876..17 4275 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:28:40
Subject Length Description Subject Range Query Range Score Percent Strand
gsb-RA 1649 CG3388-RA 609..1468 876..17 4285 99.9 Minus
gsb-n-RA 2237 CG2692-RA 876..1042 739..573 220 75.4 Minus
prd-RB 2459 CG6716-RB 991..1110 692..573 180 77.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 13:28:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 25063603..25064462 876..17 4285 99.9 Minus
2R 25286936 2R 25041692..25041858 573..739 220 75.4 Plus
Blast to na_te.dros performed on 2015-02-06 13:28:37 has no hits.

BS04459.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:48:58 Download gff for BS04459.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3388-PA 426..1284 17..875 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:10:38 Download gff for BS04459.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3388-PA 426..1284 17..875 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:53:12 Download gff for BS04459.3prime
Subject Subject Range Query Range Percent Splice Strand
gsb-RA 610..1475 9..875 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 14:00:04 Download gff for BS04459.3prime
Subject Subject Range Query Range Percent Splice Strand
gsb-RA 610..1475 9..875 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 14:00:04 Download gff for BS04459.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 25063604..25064469 9..875 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:53:12 Download gff for BS04459.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20951127..20951992 9..875 99   Minus

BS04459.5prime Sequence

873 bp (673 high quality bases) assembled on 2005-12-01

> BS04459.5prime
GAAGTTATCAGTCGACATGGCTGTTTCGGCTCTCAACATGACACCCTACT
TTGGCGGATATCCCTTTCAAGGACAAGGTCGTGTCAACCAGTTGGGTGGC
GTCTTCATCAACGGCCGTCCGTTGCCCAATCACATCCGTCGCCAAATCGT
GGAGATGGCAGCAGCTGGAGTCCGTCCCTGTGTCATCTCCCGCCAGCTGC
GCGTCTCTCATGGCTGCGTCTCAAAGATTCTAAACCGCTTCCAGGAGACT
GGCTCCATTCGGCCCGGAGTAATCGGTGGCAGCAAGCCCCGTGTAGCCAC
GCCAGACATTGAGTCCAGAATCGAGGAACTTAAACAGTCGCAGCCCGGTA
TTTTTAGTTGGGAAATCCGCGCCAAGCTAATCGAAGCGGGAGTCTGCGAC
AAGCAAAATGCTCCGTCGGTGAGCTCTATTTCGCGTCTTCTGCGAGGATC
CTCCGGATCAGGGACCTCCCACAGCATCGACGGCATCCTCGGCGGAGGCG
CTGGTTCTGTGGGAAGCGAGGATGAGAGCGAGGACGATGCCGAGCCCAGT
GTGCAGTTAAAAAGGAAACAAAGGCGTTCCCGGACGACATTCTCCAACGA
CCAGATCGACGCCCTAGAGCGCATCTTCGCCCGTACACAGTACCCCGATG
TCTACACCCGGGAGGAGTTGGCCCAGAGCACGGGATTGACCGAGGCCCGT
GTCCAAGTTTGGTTCTCTAATCGCCGTGCTCGTCTGCGCAAGCAACTGAA
CACCCAGCAGGTGCCTAGCTTTGCTCCCACATCTACTTCTTTTGGCGCAA
CTCCCACTACCAGTGCCGCCCCTGCTCCAAACATGGGAATGAGCCTTTAC
AGTTCACAGAGCTGGCCATCATC

BS04459.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG3388-PA 1284 gsb-RA 1..857 17..873 4285 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:15:57
Subject Length Description Subject Range Query Range Score Percent Strand
gsb-RA 1649 CG3388-RA 185..1041 17..873 4285 100 Plus
gsb-n-RA 2237 CG2692-RA 369..589 59..279 460 81.6 Plus
prd-RB 2459 CG6716-RB 401..633 95..327 415 78.5 Plus
gsb-n-RA 2237 CG2692-RA 876..1042 578..744 220 75.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:15:51
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 25063228..25064035 66..873 4025 99.9 Plus
2L 23513712 2L 12084821..12085053 327..95 415 78.5 Minus
2R 25286936 2R 25051416..25051625 279..70 405 79.5 Minus
2R 25286936 2R 25062148..25062203 17..72 280 100 Plus
2R 25286936 2R 25041692..25041858 744..578 220 75.4 Minus
Blast to na_te.dros performed on 2015-02-12 05:15:54 has no hits.

BS04459.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:48:59 Download gff for BS04459.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3388-PA 1..857 17..873 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:10:39 Download gff for BS04459.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3388-PA 1..857 17..873 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:30:34 Download gff for BS04459.5prime
Subject Subject Range Query Range Percent Splice Strand
gsb-RA 180..1041 10..873 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:22:27 Download gff for BS04459.5prime
Subject Subject Range Query Range Percent Splice Strand
gsb-RA 180..1041 10..873 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:22:27 Download gff for BS04459.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 25062143..25062202 10..71 95 -> Plus
2R 25063234..25064035 72..873 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:30:34 Download gff for BS04459.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20949666..20949725 10..71 95 -> Plus
arm_2R 20950757..20951558 72..873 100   Plus

BS04459.complete Sequence

1316 bp (1316 high quality bases) assembled on 2005-09-13

> BS04459.complete
GAAGTTATCAGTCGACATGGCTGTTTCGGCTCTCAACATGACACCCTACT
TTGGCGGATATCCCTTTCAAGGACAAGGTCGTGTCAACCAGTTGGGTGGC
GTCTTCATCAACGGCCGTCCGTTGCCCAATCACATCCGTCGCCAAATCGT
GGAGATGGCAGCAGCTGGAGTCCGTCCCTGTGTCATCTCCCGCCAGCTGC
GCGTCTCTCATGGCTGCGTCTCAAAGATTCTAAACCGCTTCCAGGAGACT
GGCTCCATTCGGCCCGGAGTAATCGGTGGCAGCAAGCCCCGTGTAGCCAC
GCCAGACATTGAGTCCAGAATCGAGGAACTTAAACAGTCGCAGCCCGGTA
TTTTTAGTTGGGAAATCCGCGCCAAGCTAATCGAAGCGGGAGTCTGCGAC
AAGCAAAATGCTCCGTCGGTGAGCTCTATTTCGCGTCTTCTGCGAGGATC
CTCCGGATCAGGGACCTCCCACAGCATCGACGGCATCCTCGGCGGAGGCG
CTGGTTCTGTGGGAAGCGAGGATGAGAGCGAGGACGATGCCGAGCCCAGT
GTGCAGTTAAAAAGGAAACAAAGGCGTTCCCGGACGACATTCTCCAACGA
CCAGATCGACGCCCTAGAGCGCATCTTCGCCCGTACACAGTACCCCGATG
TCTACACCCGGGAGGAGTTGGCCCAGAGCACGGGATTGACCGAGGCCCGT
GTCCAAGTTTGGTTCTCTAATCGCCGTGCTCGTCTGCGCAAGCAACTGAA
CACCCAGCAGGTGCCTAGCTTTGCTCCCACATCTACTTCTTTTGGCGCAA
CTCCCACTACCAGTGCCGCCCCTGCTCCAAACATGGGAATGAGCCTTTAC
AGTTCACAGAGCTGGCCATCATCCGGAGCCTATGAAAATCATGCTGCCTA
TGGTGGATCGGTTGCATCCATGTCCCCCGCCAGCAGCACCTCGGGTACCA
GCTCTGCCGCCCACAGTCCCGTACAGACGCAAGCGCAGCAGCCAGGAACT
GGAAGCGAGTTTATGACCTCCACTTACGGCGTGGGATCGAGCAATGCTAC
TTACCCATCGGCTGCCTATTCAATGCCGCAGACTCCTGCTACATCCTCGG
AGCAGCTGAGATCCCAGTTTGCATCTGCCGCCGCTTCGGGCTCTCACCAC
CCCTCCACGTGGGACAGCTACAACTTTGCGGGTTCCTTTTTCCCTCCCGC
TTCTGCCGCAGGCAACCATATTAGCGGCTACCATCATCAGGTTGATCAGA
AGAGCTCAATGATGACCACTGCACCAACCTATCCATACTTTGGATTTTGA
AAGCTTTCTAGACCAT

BS04459.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:42:47
Subject Length Description Subject Range Query Range Score Percent Strand
gsb-RA 1284 CG3388-PA 1..1284 17..1300 6405 99.9 Plus
gsb-n-RA 1350 CG2692-PA 46..266 59..279 460 80.5 Plus
prd-RB 1842 CG6716-PB 103..335 95..327 415 78.5 Plus
gsb-n-RA 1350 CG2692-PA 553..719 578..744 220 75.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:42:49
Subject Length Description Subject Range Query Range Score Percent Strand
gsb-RA 1649 CG3388-RA 185..1468 17..1300 6405 99.9 Plus
gsb-n-RA 2237 CG2692-RA 369..589 59..279 460 80.5 Plus
prd-RB 2459 CG6716-RB 401..633 95..327 415 78.5 Plus
gsb-n-RA 2237 CG2692-RA 876..1042 578..744 220 75.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:42:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 25063228..25064462 66..1300 6145 99.8 Plus
2L 23513712 2L 12084821..12085053 327..95 415 78.5 Minus
2R 25286936 2R 25051416..25051625 279..70 405 79.5 Minus
2R 25286936 2R 25062148..25062203 17..72 280 100 Plus
2R 25286936 2R 25041692..25041858 744..578 220 75.4 Minus
Blast to na_te.dros performed on 2014-11-28 00:42:46 has no hits.

BS04459.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:32:16 Download gff for BS04459.complete
Subject Subject Range Query Range Percent Splice Strand
gsb-RA 1..1284 17..1300 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:16:27 Download gff for BS04459.complete
Subject Subject Range Query Range Percent Splice Strand
gsb-RA 164..1452 10..1300 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:30:05 Download gff for BS04459.complete
Subject Subject Range Query Range Percent Splice Strand
gsb-RA 185..1467 17..1299 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:32:16 Download gff for BS04459.complete
Subject Subject Range Query Range Percent Splice Strand
gsb-RA 164..1452 10..1300 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:36:40 Download gff for BS04459.complete
Subject Subject Range Query Range Percent Splice Strand
gsb-RA 185..1467 17..1299 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:36:40 Download gff for BS04459.complete
Subject Subject Range Query Range Percent Splice Strand
2R 25062148..25062202 17..71 100 -> Plus
2R 25063234..25064461 72..1299 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:30:05 Download gff for BS04459.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20949671..20949725 17..71 100 -> Plus
arm_2R 20950757..20951984 72..1299 99   Plus

BS04459.pep Sequence

Translation from 16 to 1299

> BS04459.pep
MAVSALNMTPYFGGYPFQGQGRVNQLGGVFINGRPLPNHIRRQIVEMAAA
GVRPCVISRQLRVSHGCVSKILNRFQETGSIRPGVIGGSKPRVATPDIES
RIEELKQSQPGIFSWEIRAKLIEAGVCDKQNAPSVSSISRLLRGSSGSGT
SHSIDGILGGGAGSVGSEDESEDDAEPSVQLKRKQRRSRTTFSNDQIDAL
ERIFARTQYPDVYTREELAQSTGLTEARVQVWFSNRRARLRKQLNTQQVP
SFAPTSTSFGATPTTSAAPAPNMGMSLYSSQSWPSSGAYENHAAYGGSVA
SMSPASSTSGTSSAAHSPVQTQAQQPGTGSEFMTSTYGVGSSNATYPSAA
YSMPQTPATSSEQLRSQFASAAASGSHHPSTWDSYNFAGSFFPPASAAGN
HISGYHHQVDQKSSMMTTAPTYPYFGF*

BS04459.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:41:14
Subject Length Description Subject Range Query Range Score Percent Strand
gsb-PA 427 CG3388-PA 1..427 1..427 2202 99.8 Plus
gsb-n-PA 449 CG2692-PA 5..310 4..328 892 58.3 Plus
prd-PB 613 CG6716-PB 5..346 2..313 859 55.6 Plus
prd-PA 590 CG6716-PA 4..323 19..313 847 57.5 Plus
Poxm-PC 370 CG9610-PC 11..162 21..171 495 63.8 Plus