Clone BS04460 Report

Search the DGRC for BS04460

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:44
Well:60
Vector:pDNR-Dual
Associated Gene/Transcriptac-RA
Protein status:BS04460.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04460.3prime Sequence

636 bp (635 high quality bases) assembled on 2005-12-01

> BS04460.3prime
ATGGTCTAGAAAGCTTTTACAGGTCGTCCTGCCAGAGTGATATATAGTCG
AGGATGTCCTCATCTTCAGTACCAGAACTGCAGGAATTGTTACGGTAGTC
TTCAAAACTGGCTTCCAACTTGGTATGAAAATTGTTAGGAGGTGTTGCTC
CCGGAATCGTCGATGTTGCTGGCTTGCAATAAGAGCTAATGCTGTTGCAG
GAACTTGTGCTGCCAGTTGGAGATTGCAACTGCAACTCTTGGTGCCAGGC
GTATAAGTGTTGATGCTGTTGCTGCTGCTGAAAGTGCAAATGTTGCTGCT
GCAAATGCAACTGTTTCTGTTTCTGCTGGTCGTTTTCATGAAGAACTTTC
TGCAAGCGCCGTATGTACTCTACTGCCATTTTCAGTGTGCTAACTTTGCT
CAGTTTTTTATTGGCGCCGGGACCAATTCCCCGGCGACCATTGCTTAAAT
CGGCTATTACGGCCGCAGGGATATGTTGTCGTAGTTGGCTGAAGCCATTG
TTGACCTGCTTTACGCGGTTGCGTTCCCGGGCATTTCTCCGGATAACAGA
GGGTCCATTAAAGGCCGAAGATGACTCCTCGTCGTCGTTGAAAACAGAGT
GATTTTCGCTGCCCAAAGCCATGTCGACTGATAACT

BS04460.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG3796-PA 606 ac-RA 1..606 622..17 3030 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:40:37
Subject Length Description Subject Range Query Range Score Percent Strand
ac-RA 917 CG3796-RA 64..671 622..15 3040 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:40:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 370094..370701 622..15 3040 100 Minus
Blast to na_te.dros performed 2015-02-10 22:40:34
Subject Length Description Subject Range Query Range Score Percent Strand
TART-A 13424 TART-A 13424bp 9927..10002 286..211 110 60.5 Minus

BS04460.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 07:49:00 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:10:40 Download gff for BS04460.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3796-PA 1..606 17..622 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:32:35 Download gff for BS04460.3prime
Subject Subject Range Query Range Percent Splice Strand
ac-RA 64..671 15..622 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:10:14 Download gff for BS04460.3prime
Subject Subject Range Query Range Percent Splice Strand
ac-RA 64..671 15..622 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:10:14 Download gff for BS04460.3prime
Subject Subject Range Query Range Percent Splice Strand
X 370094..370701 15..622 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:32:35 Download gff for BS04460.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 264127..264734 15..622 100   Minus

BS04460.5prime Sequence

636 bp (635 high quality bases) assembled on 2005-12-01

> BS04460.5prime
GAAGTTATCAGTCGACATGGCTTTGGGCAGCGAAAATCACTCTGTTTTCA
ACGACGACGAGGAGTCATCTTCGGCCTTTAATGGACCCTCTGTTATCCGG
AGAAATGCCCGGGAACGCAACCGCGTAAAGCAGGTCAACAATGGCTTCAG
CCAACTACGACAACATATCCCTGCGGCCGTAATAGCCGATTTAAGCAATG
GTCGCCGGGGAATTGGTCCCGGCGCCAATAAAAAACTGAGCAAAGTTAGC
ACACTGAAAATGGCAGTAGAGTACATACGGCGCTTGCAGAAAGTTCTTCA
TGAAAACGACCAGCAGAAACAGAAACAGTTGCATTTGCAGCAGCAACATT
TGCACTTTCAGCAGCAGCAACAGCATCAACACTTATACGCCTGGCACCAA
GAGTTGCAGTTGCAATCTCCAACTGGCAGCACAAGTTCCTGCAACAGCAT
TAGCTCTTATTGCAAGCCAGCAACATCGACGATTCCGGGAGCAACACCTC
CTAACAATTTTCATACCAAGTTGGAAGCCAGTTTTGAAGACTACCGTAAC
AATTCCTGCAGTTCTGGTACTGAAGATGAGGACATCCTCGACTATATATC
ACTCTGGCAGGACGACCTGTAAAAGCTTTCTAGACC

BS04460.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG3796-PA 606 ac-RA 1..606 17..622 3030 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:32:58
Subject Length Description Subject Range Query Range Score Percent Strand
ac-RA 917 CG3796-RA 64..671 17..624 3040 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:32:51
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 370094..370701 17..624 3040 100 Plus
Blast to na_te.dros performed 2015-02-04 03:32:55
Subject Length Description Subject Range Query Range Score Percent Strand
TART-A 13424 TART-A 13424bp 9927..10002 353..428 110 60.5 Plus

BS04460.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 07:49:01 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:10:42 Download gff for BS04460.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3796-PA 1..606 17..622 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 05:01:49 Download gff for BS04460.5prime
Subject Subject Range Query Range Percent Splice Strand
ac-RA 64..671 17..624 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:45:03 Download gff for BS04460.5prime
Subject Subject Range Query Range Percent Splice Strand
ac-RA 64..671 17..624 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:45:03 Download gff for BS04460.5prime
Subject Subject Range Query Range Percent Splice Strand
X 370094..370701 17..624 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 05:01:49 Download gff for BS04460.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 264127..264734 17..624 100   Plus

BS04460.complete Sequence

638 bp (638 high quality bases) assembled on 2005-09-13

> BS04460.complete
GAAGTTATCAGTCGACATGGCTTTGGGCAGCGAAAATCACTCTGTTTTCA
ACGACGACGAGGAGTCATCTTCGGCCTTTAATGGACCCTCTGTTATCCGG
AGAAATGCCCGGGAACGCAACCGCGTAAAGCAGGTCAACAATGGCTTCAG
CCAACTACGACAACATATCCCTGCGGCCGTAATAGCCGATTTAAGCAATG
GTCGCCGGGGAATTGGTCCCGGCGCCAATAAAAAACTGAGCAAAGTTAGC
ACACTGAAAATGGCAGTAGAGTACATACGGCGCTTGCAGAAAGTTCTTCA
TGAAAACGACCAGCAGAAACAGAAACAGTTGCATTTGCAGCAGCAACATT
TGCACTTTCAGCAGCAGCAACAGCATCAACACTTATACGCCTGGCACCAA
GAGTTGCAGTTGCAATCTCCAACTGGCAGCACAAGTTCCTGCAACAGCAT
TAGCTCTTATTGCAAGCCAGCAACATCGACGATTCCGGGAGCAACACCTC
CTAACAATTTTCATACCAAGTTGGAAGCCAGTTTTGAAGACTACCGTAAC
AATTCCTGCAGTTCTGGTACTGAAGATGAGGACATCCTCGACTATATATC
ACTCTGGCAGGACGACCTGTAAAAGCTTTCTAGACCAT

BS04460.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:00:25
Subject Length Description Subject Range Query Range Score Percent Strand
ac-RA 606 CG3796-PA 1..606 17..622 3030 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:00:26
Subject Length Description Subject Range Query Range Score Percent Strand
ac-RA 917 CG3796-RA 64..671 17..624 3040 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:00:24
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 370094..370701 17..624 3040 100 Plus
Blast to na_te.dros performed 2014-11-27 01:00:24
Subject Length Description Subject Range Query Range Score Percent Strand
TART-A 13424 TART-A 13424bp 9927..10002 353..428 110 60.5 Plus

BS04460.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:32:17 Download gff for BS04460.complete
Subject Subject Range Query Range Percent Splice Strand
ac-RA 1..606 17..622 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:58:11 Download gff for BS04460.complete
Subject Subject Range Query Range Percent Splice Strand
ac-RA 64..671 17..624 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:41:48 Download gff for BS04460.complete
Subject Subject Range Query Range Percent Splice Strand
ac-RA 64..667 17..620 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:32:18 Download gff for BS04460.complete
Subject Subject Range Query Range Percent Splice Strand
ac-RA 64..671 17..624 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:16:09 Download gff for BS04460.complete
Subject Subject Range Query Range Percent Splice Strand
ac-RA 64..667 17..620 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:16:09 Download gff for BS04460.complete
Subject Subject Range Query Range Percent Splice Strand
X 370094..370697 17..620 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:41:48 Download gff for BS04460.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 264127..264730 17..620 100   Plus

BS04460.pep Sequence

Translation from 16 to 621

> BS04460.pep
MALGSENHSVFNDDEESSSAFNGPSVIRRNARERNRVKQVNNGFSQLRQH
IPAAVIADLSNGRRGIGPGANKKLSKVSTLKMAVEYIRRLQKVLHENDQQ
KQKQLHLQQQHLHFQQQQQHQHLYAWHQELQLQSPTGSTSSCNSISSYCK
PATSTIPGATPPNNFHTKLEASFEDYRNNSCSSGTEDEDILDYISLWQDD
L*

BS04460.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:12:18
Subject Length Description Subject Range Query Range Score Percent Strand
ac-PA 201 CG3796-PA 1..201 1..201 1057 100 Plus
l(1)sc-PA 257 CG3839-PA 83..256 24..199 291 41.7 Plus
sc-PA 345 CG3827-PA 100..344 25..199 264 35.2 Plus
ase-PA 486 CG3258-PA 160..227 25..94 203 64.3 Plus