Clone Sequence Records
BS04460.3prime Sequence
636 bp (635 high quality bases) assembled on 2005-12-01
> BS04460.3prime
ATGGTCTAGAAAGCTTTTACAGGTCGTCCTGCCAGAGTGATATATAGTCG
AGGATGTCCTCATCTTCAGTACCAGAACTGCAGGAATTGTTACGGTAGTC
TTCAAAACTGGCTTCCAACTTGGTATGAAAATTGTTAGGAGGTGTTGCTC
CCGGAATCGTCGATGTTGCTGGCTTGCAATAAGAGCTAATGCTGTTGCAG
GAACTTGTGCTGCCAGTTGGAGATTGCAACTGCAACTCTTGGTGCCAGGC
GTATAAGTGTTGATGCTGTTGCTGCTGCTGAAAGTGCAAATGTTGCTGCT
GCAAATGCAACTGTTTCTGTTTCTGCTGGTCGTTTTCATGAAGAACTTTC
TGCAAGCGCCGTATGTACTCTACTGCCATTTTCAGTGTGCTAACTTTGCT
CAGTTTTTTATTGGCGCCGGGACCAATTCCCCGGCGACCATTGCTTAAAT
CGGCTATTACGGCCGCAGGGATATGTTGTCGTAGTTGGCTGAAGCCATTG
TTGACCTGCTTTACGCGGTTGCGTTCCCGGGCATTTCTCCGGATAACAGA
GGGTCCATTAAAGGCCGAAGATGACTCCTCGTCGTCGTTGAAAACAGAGT
GATTTTCGCTGCCCAAAGCCATGTCGACTGATAACT
BS04460.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3796-PA | 606 | ac-RA | 1..606 | 622..17 | 3030 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:40:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ac-RA | 917 | CG3796-RA | 64..671 | 622..15 | 3040 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:40:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 370094..370701 | 622..15 | 3040 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 22:40:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-A | 13424 | TART-A 13424bp | 9927..10002 | 286..211 | 110 | 60.5 | Minus |
BS04460.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 07:49:00 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:10:40 Download gff for
BS04460.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3796-PA | 1..606 | 17..622 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:32:35 Download gff for
BS04460.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ac-RA | 64..671 | 15..622 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:10:14 Download gff for
BS04460.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ac-RA | 64..671 | 15..622 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:10:14 Download gff for
BS04460.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 370094..370701 | 15..622 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:32:35 Download gff for
BS04460.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 264127..264734 | 15..622 | 100 | | Minus |
BS04460.5prime Sequence
636 bp (635 high quality bases) assembled on 2005-12-01
> BS04460.5prime
GAAGTTATCAGTCGACATGGCTTTGGGCAGCGAAAATCACTCTGTTTTCA
ACGACGACGAGGAGTCATCTTCGGCCTTTAATGGACCCTCTGTTATCCGG
AGAAATGCCCGGGAACGCAACCGCGTAAAGCAGGTCAACAATGGCTTCAG
CCAACTACGACAACATATCCCTGCGGCCGTAATAGCCGATTTAAGCAATG
GTCGCCGGGGAATTGGTCCCGGCGCCAATAAAAAACTGAGCAAAGTTAGC
ACACTGAAAATGGCAGTAGAGTACATACGGCGCTTGCAGAAAGTTCTTCA
TGAAAACGACCAGCAGAAACAGAAACAGTTGCATTTGCAGCAGCAACATT
TGCACTTTCAGCAGCAGCAACAGCATCAACACTTATACGCCTGGCACCAA
GAGTTGCAGTTGCAATCTCCAACTGGCAGCACAAGTTCCTGCAACAGCAT
TAGCTCTTATTGCAAGCCAGCAACATCGACGATTCCGGGAGCAACACCTC
CTAACAATTTTCATACCAAGTTGGAAGCCAGTTTTGAAGACTACCGTAAC
AATTCCTGCAGTTCTGGTACTGAAGATGAGGACATCCTCGACTATATATC
ACTCTGGCAGGACGACCTGTAAAAGCTTTCTAGACC
BS04460.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3796-PA | 606 | ac-RA | 1..606 | 17..622 | 3030 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:32:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ac-RA | 917 | CG3796-RA | 64..671 | 17..624 | 3040 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:32:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 370094..370701 | 17..624 | 3040 | 100 | Plus |
Blast to na_te.dros performed 2015-02-04 03:32:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-A | 13424 | TART-A 13424bp | 9927..10002 | 353..428 | 110 | 60.5 | Plus |
BS04460.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 07:49:01 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:10:42 Download gff for
BS04460.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3796-PA | 1..606 | 17..622 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 05:01:49 Download gff for
BS04460.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ac-RA | 64..671 | 17..624 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:45:03 Download gff for
BS04460.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ac-RA | 64..671 | 17..624 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:45:03 Download gff for
BS04460.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 370094..370701 | 17..624 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 05:01:49 Download gff for
BS04460.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 264127..264734 | 17..624 | 100 | | Plus |
BS04460.complete Sequence
638 bp (638 high quality bases) assembled on 2005-09-13
> BS04460.complete
GAAGTTATCAGTCGACATGGCTTTGGGCAGCGAAAATCACTCTGTTTTCA
ACGACGACGAGGAGTCATCTTCGGCCTTTAATGGACCCTCTGTTATCCGG
AGAAATGCCCGGGAACGCAACCGCGTAAAGCAGGTCAACAATGGCTTCAG
CCAACTACGACAACATATCCCTGCGGCCGTAATAGCCGATTTAAGCAATG
GTCGCCGGGGAATTGGTCCCGGCGCCAATAAAAAACTGAGCAAAGTTAGC
ACACTGAAAATGGCAGTAGAGTACATACGGCGCTTGCAGAAAGTTCTTCA
TGAAAACGACCAGCAGAAACAGAAACAGTTGCATTTGCAGCAGCAACATT
TGCACTTTCAGCAGCAGCAACAGCATCAACACTTATACGCCTGGCACCAA
GAGTTGCAGTTGCAATCTCCAACTGGCAGCACAAGTTCCTGCAACAGCAT
TAGCTCTTATTGCAAGCCAGCAACATCGACGATTCCGGGAGCAACACCTC
CTAACAATTTTCATACCAAGTTGGAAGCCAGTTTTGAAGACTACCGTAAC
AATTCCTGCAGTTCTGGTACTGAAGATGAGGACATCCTCGACTATATATC
ACTCTGGCAGGACGACCTGTAAAAGCTTTCTAGACCAT
BS04460.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:00:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ac-RA | 606 | CG3796-PA | 1..606 | 17..622 | 3030 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:00:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ac-RA | 917 | CG3796-RA | 64..671 | 17..624 | 3040 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:00:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 370094..370701 | 17..624 | 3040 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 01:00:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-A | 13424 | TART-A 13424bp | 9927..10002 | 353..428 | 110 | 60.5 | Plus |
BS04460.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:32:17 Download gff for
BS04460.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ac-RA | 1..606 | 17..622 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:58:11 Download gff for
BS04460.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ac-RA | 64..671 | 17..624 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:41:48 Download gff for
BS04460.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ac-RA | 64..667 | 17..620 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:32:18 Download gff for
BS04460.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ac-RA | 64..671 | 17..624 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:16:09 Download gff for
BS04460.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ac-RA | 64..667 | 17..620 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:16:09 Download gff for
BS04460.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 370094..370697 | 17..620 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:41:48 Download gff for
BS04460.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 264127..264730 | 17..620 | 100 | | Plus |
BS04460.pep Sequence
Translation from 16 to 621
> BS04460.pep
MALGSENHSVFNDDEESSSAFNGPSVIRRNARERNRVKQVNNGFSQLRQH
IPAAVIADLSNGRRGIGPGANKKLSKVSTLKMAVEYIRRLQKVLHENDQQ
KQKQLHLQQQHLHFQQQQQHQHLYAWHQELQLQSPTGSTSSCNSISSYCK
PATSTIPGATPPNNFHTKLEASFEDYRNNSCSSGTEDEDILDYISLWQDD
L*
BS04460.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:12:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ac-PA | 201 | CG3796-PA | 1..201 | 1..201 | 1057 | 100 | Plus |
l(1)sc-PA | 257 | CG3839-PA | 83..256 | 24..199 | 291 | 41.7 | Plus |
sc-PA | 345 | CG3827-PA | 100..344 | 25..199 | 264 | 35.2 | Plus |
ase-PA | 486 | CG3258-PA | 160..227 | 25..94 | 203 | 64.3 | Plus |