Clone Sequence Records
BS04463.3prime Sequence
741 bp (740 high quality bases) assembled on 2005-12-01
> BS04463.3prime
ATGGTCTAGAAAGCTTTTAATTATGGTGCATGGTCTCGTGGTTCTTAAGG
GCAGAGTTTCTGTTGAAGATCTTGGGGCATCGGGAACACTTGTAGGATCG
TAATTCAGGTCTCGAACTATGTACGCGCTCATGGCGCCTAAGACCGCGGA
TTTGTGCGTAGGACTGGGAGCATTGTAAGCATTTGTAAGGTTTTTCACGC
GCATGGACCCACATGTGACACTTAAGGTGCGCAGGTAACATGAAATACTT
CCCGCAAATGTTACATTTATGTGTCTTCTTCAGCATTTTCTTCTTGGTAT
CCTTCTGGGCGCTGCTCTGGCTCACATTGCCATTCCCGTTGGAGTTTGAG
TTGGGGCACATATTCTCCACGTTGTCCCCCGGTGAATCGATTGTCAAGTC
AATTGTCTCCATCTCCTGGCTGCCATCGACTGGCTCAATCAGTTCAACAT
CGGAGTCATTCGATCCTTCTTCCTCATAATTCATCTCACTGACCACCATC
TCATCCTGCTCAATCACCTGCACGCTGTCCATCCCGTAAGCAGTCTGCGC
ATCCAGCGCACAAGACTGGCAAATGGTCTTGGGAAAAGGATCCTTCGGTA
GAACCGGGAAGCCGCACCAATCGGAAATCATGGTCGCTAGGGAAACGCCG
GGTAGCGGCATCGTTTCGAAGATGCATAGCATGTTCTCCATCTCCCTCAA
ACAGACACGGCACATCCTGGAATCCATGTCGACTGATAACT
BS04463.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4318-PA | 699 | CG4318-RA | 1..699 | 715..17 | 3495 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:42:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4318-RB | 1464 | CG4318-RB | 65..775 | 727..17 | 3555 | 100 | Minus |
CG4318-RB | 1464 | CG4318-RB | 778..861 | 100..17 | 390 | 97.6 | Minus |
CG4318-RB | 1464 | CG4318-RB | 864..947 | 100..17 | 390 | 97.6 | Minus |
CG4318-RB | 1464 | CG4318-RB | 950..1033 | 100..17 | 390 | 97.6 | Minus |
CG4318-RB | 1464 | CG4318-RB | 1036..1119 | 100..17 | 390 | 97.6 | Minus |
CG4318-RB | 1464 | CG4318-RB | 1122..1205 | 100..17 | 390 | 97.6 | Minus |
CG4318-RB | 1464 | CG4318-RB | 1208..1293 | 100..17 | 360 | 95.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:42:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13154150..13154860 | 17..727 | 3555 | 100 | Plus |
X | 23542271 | X | 13153720..13153803 | 17..100 | 390 | 97.6 | Plus |
X | 23542271 | X | 13153806..13153889 | 17..100 | 390 | 97.6 | Plus |
X | 23542271 | X | 13153892..13153975 | 17..100 | 390 | 97.6 | Plus |
X | 23542271 | X | 13153978..13154061 | 17..100 | 390 | 97.6 | Plus |
X | 23542271 | X | 13154064..13154147 | 17..100 | 390 | 97.6 | Plus |
X | 23542271 | X | 13153643..13153717 | 26..100 | 345 | 97.3 | Plus |
Blast to na_te.dros performed on 2015-01-31 14:42:07 has no hits.
BS04463.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:49:04 Download gff for
BS04463.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4318-PA | 1..699 | 17..715 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:10:46 Download gff for
BS04463.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4318-PA | 1..699 | 17..715 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:20:21 Download gff for
BS04463.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4318-RB | 57..782 | 9..738 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:37:52 Download gff for
BS04463.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4318-RB | 57..782 | 9..738 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:37:52 Download gff for
BS04463.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13154143..13154868 | 9..738 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:20:21 Download gff for
BS04463.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13048176..13048901 | 9..738 | 98 | | Plus |
BS04463.5prime Sequence
741 bp (740 high quality bases) assembled on 2005-12-01
> BS04463.5prime
GAAGTTATCAGTCGACATGGATTCCAGGATGTGCCGTGTCTGTTTGAGGG
AGATGGAGAACATGCTATGCATCTTCGAAACGATGCCGCTACCCGGCGTT
TCCCTAGCGACCATGATTTCCGATTGGTGCGGCTTCCCGGTTCTACCGAA
GGATCCTTTTCCCAAGACCATTTGCCAGTCTTGTGCGCTGGATGCGCAGA
CTGCTTACGGGATGGACAGCGTGCAGGTGATTGAGCAGGATGAGATGGTG
GTCAGTGAGATGAATTATGAGGAAGAAGGATCGAATGACTCCGATGTTGA
ACTGATTGAGCCAGTCGATGGCAGCCAGGAGATGGAGACAATTGACTTGA
CAATCGATTCACCGGGGGACAACGTGGAGAATATGTGCCCCAACTCAAAC
TCCAACGGGAATGGCAATGTGAGCCAGAGCAGCGCCCAGAAGGATACCAA
GAAGAAAATGCTGAAGAAGACACATAAATGTAACATTTGCGGGAAGTATT
TCATGTTACCTGCGCACCTTAAGTGTCACATGTGGGTCCATGCGCGTGAA
AAACCTTACAAATGCTTACAATGCTCCCAGTCCTACGCACAAATCCGCGG
TCTTAGGCGCCATGAGCGCGTACATAGTTCGAGACCTGAATTACGATCCT
ACAAGTGTTCCCGATGCCCCAAGATCTTCAACAGAAACTCTGCCCTTAAG
AACCACGAGACCATGCACCATAATTAAAAGCTTTCTAGACC
BS04463.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4318-PA | 699 | CG4318-RA | 1..699 | 29..727 | 3495 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:21:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4318-RB | 1464 | CG4318-RB | 65..775 | 17..727 | 3555 | 100 | Plus |
CG4318-RB | 1464 | CG4318-RB | 778..861 | 644..727 | 390 | 97.6 | Plus |
CG4318-RB | 1464 | CG4318-RB | 864..947 | 644..727 | 390 | 97.6 | Plus |
CG4318-RB | 1464 | CG4318-RB | 950..1033 | 644..727 | 390 | 97.6 | Plus |
CG4318-RB | 1464 | CG4318-RB | 1036..1119 | 644..727 | 390 | 97.6 | Plus |
CG4318-RB | 1464 | CG4318-RB | 1122..1205 | 644..727 | 390 | 97.6 | Plus |
CG4318-RB | 1464 | CG4318-RB | 1208..1293 | 644..727 | 360 | 95.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:21:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13154150..13154860 | 727..17 | 3555 | 100 | Minus |
X | 23542271 | X | 13153720..13153803 | 727..644 | 390 | 97.6 | Minus |
X | 23542271 | X | 13153806..13153889 | 727..644 | 390 | 97.6 | Minus |
X | 23542271 | X | 13153892..13153975 | 727..644 | 390 | 97.6 | Minus |
X | 23542271 | X | 13153978..13154061 | 727..644 | 390 | 97.6 | Minus |
X | 23542271 | X | 13154064..13154147 | 727..644 | 390 | 97.6 | Minus |
X | 23542271 | X | 13153643..13153717 | 718..644 | 345 | 97.3 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:21:21 has no hits.
BS04463.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:49:05 Download gff for
BS04463.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4318-PA | 1..699 | 29..727 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:10:47 Download gff for
BS04463.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4318-PA | 1..699 | 29..727 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:31:31 Download gff for
BS04463.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4318-RB | 57..782 | 6..735 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:34:29 Download gff for
BS04463.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4318-RB | 57..782 | 6..735 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:34:29 Download gff for
BS04463.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13154143..13154868 | 6..735 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:31:31 Download gff for
BS04463.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13048176..13048901 | 6..735 | 98 | | Minus |
BS04463.complete Sequence
743 bp (743 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ634948
> BS04463.complete
GAAGTTATCAGTCGACATGGATTCCAGGATGTGCCGTGTCTGTTTGAGGG
AGATGGAGAACATGCTATGCATCTTCGAAACGATGCCGCTACCCGGCGTT
TCCCTAGCGACCATGATTTCCGATTGGTGCGGCTTCCCGGTTCTACCGAA
GGATCCTTTTCCCAAGACCATTTGCCAGTCTTGTGCGCTGGATGCGCAGA
CTGCTTACGGGATGGACAGCGTGCAGGTGATTGAGCAGGATGAGATGGTG
GTCAGTGAGATGAATTATGAGGAAGAAGGATCGAATGACTCCGATGTTGA
ACTGATTGAGCCAGTCGATGGCAGCCAGGAGATGGAGACAATTGACTTGA
CAATCGATTCACCGGGGGACAACGTGGAGAATATGTGCCCCAACTCAAAC
TCCAACGGGAATGGCAATGTGAGCCAGAGCAGCGCCCAGAAGGATACCAA
GAAGAAAATGCTGAAGAAGACACATAAATGTAACATTTGCGGGAAGTATT
TCATGTTACCTGCGCACCTTAAGTGTCACATGTGGGTCCATGCGCGTGAA
AAACCTTACAAATGCTTACAATGCTCCCAGTCCTACGCACAAATCCGCGG
TCTTAGGCGCCATGAGCGCGTACATAGTTCGAGACCTGAATTACGATCCT
ACAAGTGTTCCCGATGCCCCAAGATCTTCAACAGAAACTCTGCCCTTAAG
AACCACGAGACCATGCACCATAATTAAAAGCTTTCTAGACCAT
BS04463.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:57:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4318-RB | 711 | CG4318-PB | 1..711 | 17..727 | 3555 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:57:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4318-RB | 1464 | CG4318-RB | 65..775 | 17..727 | 3555 | 100 | Plus |
CG4318-RB | 1464 | CG4318-RB | 778..861 | 644..727 | 390 | 97.6 | Plus |
CG4318-RB | 1464 | CG4318-RB | 864..947 | 644..727 | 390 | 97.6 | Plus |
CG4318-RB | 1464 | CG4318-RB | 950..1033 | 644..727 | 390 | 97.6 | Plus |
CG4318-RB | 1464 | CG4318-RB | 1036..1119 | 644..727 | 390 | 97.6 | Plus |
CG4318-RB | 1464 | CG4318-RB | 1122..1205 | 644..727 | 390 | 97.6 | Plus |
CG4318-RB | 1464 | CG4318-RB | 1208..1282 | 644..718 | 345 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:57:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13154150..13154860 | 727..17 | 3555 | 100 | Minus |
X | 23542271 | X | 13153720..13153803 | 727..644 | 390 | 97.6 | Minus |
X | 23542271 | X | 13153806..13153889 | 727..644 | 390 | 97.6 | Minus |
X | 23542271 | X | 13153892..13153975 | 727..644 | 390 | 97.6 | Minus |
X | 23542271 | X | 13153978..13154061 | 727..644 | 390 | 97.6 | Minus |
X | 23542271 | X | 13154064..13154147 | 727..644 | 390 | 97.6 | Minus |
X | 23542271 | X | 13153643..13153717 | 718..644 | 345 | 97.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:57:29 has no hits.
BS04463.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:32:01 Download gff for
BS04463.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4318-RA | 1..699 | 29..727 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:16:09 Download gff for
BS04463.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4318-RA | 57..782 | 6..735 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:35:07 Download gff for
BS04463.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4318-RB | 65..773 | 17..725 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:32:01 Download gff for
BS04463.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4318-RA | 1..699 | 29..727 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:41:10 Download gff for
BS04463.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4318-RB | 65..773 | 17..725 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:41:10 Download gff for
BS04463.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13154152..13154860 | 17..725 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:35:07 Download gff for
BS04463.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13048185..13048893 | 17..725 | 100 | | Minus |
BS04463.pep Sequence
Translation from 16 to 726
> BS04463.pep
MDSRMCRVCLREMENMLCIFETMPLPGVSLATMISDWCGFPVLPKDPFPK
TICQSCALDAQTAYGMDSVQVIEQDEMVVSEMNYEEEGSNDSDVELIEPV
DGSQEMETIDLTIDSPGDNVENMCPNSNSNGNGNVSQSSAQKDTKKKMLK
KTHKCNICGKYFMLPAHLKCHMWVHAREKPYKCLQCSQSYAQIRGLRRHE
RVHSSRPELRSYKCSRCPKIFNRNSALKNHETMHHN*
BS04463.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:51:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4318-PB | 236 | CG4318-PB | 1..236 | 1..236 | 1287 | 100 | Plus |
CG15436-PA | 346 | CG15436-PA | 2..232 | 3..234 | 248 | 30 | Plus |
Neu2-PB | 308 | CG7204-PB | 1..197 | 16..234 | 246 | 30.8 | Plus |
Neu2-PA | 382 | CG7204-PA | 1..197 | 16..234 | 246 | 30.8 | Plus |
CG6808-PB | 375 | CG6808-PB | 162..333 | 72..234 | 199 | 28.6 | Plus |
CG15436-PA | 346 | CG15436-PA | 220..317 | 135..235 | 173 | 32.7 | Plus |