Clone Sequence Records
BS04464.3prime Sequence
840 bp (813 high quality bases) assembled on 2005-12-01
> BS04464.3prime
ATGGTCTAGAAAGCTTTTATTCTTCTATTTCAGTATTTGGCATGAAACCC
GTGCATTTTGAAGCACCACAGAGGCAAGTCTTTCCACCTGTCATCTTTTT
ATACTGCCCTTCTCCGCCATAATGAAAGCATAACTCCTCCTTGGCCGCAA
TATCCCTTGCTGCGAAAATACCTATTTTTGGTATGGGACAGTCTATTCGT
ACAGCTGCTATATGACAGTTCGGTTCGCAGCTGTGGTTCAGGTAGCGTCC
GATGTTTCCACGTCTTGATGGATCAACGATGGTCACCTGTTGCTTCTTGT
CGCTAGTGTATTCATTAAGCACCAGGATATAGTTCATCAGGCCTAGTTTT
TCATTATCATGCAAGCGGCTTCTTGCCTCGGGAACCGTTAAAAGTTCTCC
GGCATATTCGCAAATGTATCCTCCTTTTGTAATTTTCGCTGTAGTCCGTA
GTCCTTTGGATCCGTACACGGGCGAATCGAATATTTCCAAATGTTTCCTC
GGGCCTGAGTACACAAGCCGATTGGAGCACGTGTTTCTACAGCATTTGCA
CATGTCATTGCACTCAATGACAGGATTTGCGGAATTCCGAAGAATTAATT
CGCTGCCATCTTCTGTGAACTCATATTGGCCTCCATGTGCACAGACTTCG
CTGTTTTCGCAGGCTCCTTTGCAGTGACAGGGGTTCAAAAGAACAGAATT
GTACTCGTCCGCCAAGAATTTGAATTCTTTACTTCCATCGCTGGGCATCA
ACACAGATTCCAATATGTAATCGAGTCCATCTGGGTGCTCATAGTCGTCA
TTCGGAGCTGTTTCAGATTCGTCCATGTCGACTGATAACT
BS04464.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4565-PA | 672 | CG4565-RA | 1..656 | 826..171 | 3280 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:09:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4565-RB | 866 | CG4565-RB | 19..829 | 826..16 | 4055 | 100 | Minus |
CG6567-RB | 1017 | CG6567-RB | 801..942 | 33..174 | 710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:08:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10852742..10853397 | 826..171 | 3280 | 100 | Minus |
3R | 32079331 | 3R | 10853449..10853607 | 174..16 | 795 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 13:09:01 has no hits.
BS04464.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:49:06 Download gff for
BS04464.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4565-PA | 1..662 | 165..826 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:10:49 Download gff for
BS04464.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4565-PA | 1..662 | 165..826 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:57:22 Download gff for
BS04464.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4565-RB | 19..839 | 7..826 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:47:15 Download gff for
BS04464.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4565-RB | 19..839 | 7..826 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:47:15 Download gff for
BS04464.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10852742..10853396 | 172..826 | 100 | -> | Minus |
3R | 10853452..10853617 | 7..171 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:57:22 Download gff for
BS04464.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6678464..6679118 | 172..826 | 100 | -> | Minus |
arm_3R | 6679174..6679339 | 7..171 | 97 | | Minus |
BS04464.5prime Sequence
840 bp (728 high quality bases) assembled on 2005-12-01
> BS04464.5prime
GAAGTTATCAGTCGACATGGACGAATCTGAAACAGCTCCGAATGACGACT
ATGAGCACCCAGATGGACTCGATTACATATTGGAATCTGTGTTGATGCCC
AGCGATGGAAGTAAAGAATTCAAATTCTTGGCGGACGAGTACAATTCTGT
TCTTTTGAACCCCTGTCACTGCAAAGGAGCCTGCGAAAACAGCGAAGTCT
GTGCACATGGAGGCCAATATGAGTTCACAGAAGATGGCAGCGAATTAATT
CTTCGGAATTCCGCAAATCCTGTCATTGAGTGCAATGACATGTGCAAATG
CTGTAGAAACACGTGCTCCAATCGGCTTGTGTACTCAGGCCCGAGGAAAC
ATTTGGAAATATTCGATTCGCCCGTGTACGGATCCAAAGGACTACGGACT
ACAGCGAAAATTACAAAAGGAGGATACATTTGCGAATATGCCGGAGAACT
TTTAACGGTTCCCGAGGCAAGAAGCCGCTTGCATGATAATGAAAAACTAG
GCCTGATGAACTATATCCTGGTGCTTAATGAATACACTAGCGACAAGAAG
CAACAGGTGACCATCGTTGATCCATCAAGACGTGGAAACATCGGACGCTA
CCTGAACCACAGCTGCGAACCGAACTGTCATATAGCAGCTGTACGAATAG
ACTGTCCCATACCAAAAATAGGTATTTTCGCAGCAAGGGATATTGCGGCC
AAGGAGGAGTTATGCTTTCATTATGGCGGAGAAGGGCAGTATAAAAAGAT
GACAGGTGGAAAGACTTGCCTCTGTGGTGCTTCAAAATGCACGGGTTTCA
TGCCAAATACTGAAATAGAAGAATAAAAGCTTTCTAGACC
BS04464.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4565-PA | 672 | CG4565-RA | 1..656 | 17..672 | 3280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:26:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4565-RB | 866 | CG4565-RB | 19..829 | 17..827 | 4055 | 100 | Plus |
CG6567-RB | 1017 | CG6567-RB | 801..942 | 810..669 | 710 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:26:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10852742..10853397 | 17..672 | 3280 | 100 | Plus |
3R | 32079331 | 3R | 10853449..10853607 | 669..827 | 795 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:26:41 has no hits.
BS04464.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:49:07 Download gff for
BS04464.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4565-PA | 1..662 | 17..678 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:10:51 Download gff for
BS04464.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4565-PA | 1..662 | 17..678 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:18:30 Download gff for
BS04464.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4565-RB | 19..839 | 17..836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:26:09 Download gff for
BS04464.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4565-RB | 19..839 | 17..836 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:26:09 Download gff for
BS04464.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10852742..10853396 | 17..671 | 100 | -> | Plus |
3R | 10853452..10853617 | 672..836 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:18:30 Download gff for
BS04464.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6678464..6679118 | 17..671 | 100 | -> | Plus |
arm_3R | 6679174..6679339 | 672..836 | 97 | | Plus |
BS04464.complete Sequence
842 bp (842 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ634949
> BS04464.complete
GAAGTTATCAGTCGACATGGACGAATCTGAAACAGCTCCGAATGACGACT
ATGAGCACCCAGATGGACTCGATTACATATTGGAATCTGTGTTGATGCCC
AGCGATGGAAGTAAAGAATTCAAATTCTTGGCGGACGAGTACAATTCTGT
TCTTTTGAACCCCTGTCACTGCAAAGGAGCCTGCGAAAACAGCGAAGTCT
GTGCACATGGAGGCCAATATGAGTTCACAGAAGATGGCAGCGAATTAATT
CTTCGGAATTCCGCAAATCCTGTCATTGAGTGCAATGACATGTGCAAATG
CTGTAGAAACACGTGCTCCAATCGGCTTGTGTACTCAGGCCCGAGGAAAC
ATTTGGAAATATTCGATTCGCCCGTGTACGGATCCAAAGGACTACGGACT
ACAGCGAAAATTACAAAAGGAGGATACATTTGCGAATATGCCGGAGAACT
TTTAACGGTTCCCGAGGCAAGAAGCCGCTTGCATGATAATGAAAAACTAG
GCCTGATGAACTATATCCTGGTGCTTAATGAATACACTAGCGACAAGAAG
CAACAGGTGACCATCGTTGATCCATCAAGACGTGGAAACATCGGACGCTA
CCTGAACCACAGCTGCGAACCGAACTGTCATATAGCAGCTGTACGAATAG
ACTGTCCCATACCAAAAATAGGTATTTTCGCAGCAAGGGATATTGCGGCC
AAGGAGGAGTTATGCTTTCATTATGGCGGAGAAGGGCAGTATAAAAAGAT
GACAGGTGGAAAGACTTGCCTCTGTGGTGCTTCAAAATGCACGGGTTTCA
TGCCAAATACTGAAATAGAAGAATAAAAGCTTTCTAGACCAT
BS04464.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:47:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4565-RB | 810 | CG4565-PB | 1..810 | 17..826 | 4050 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:47:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4565-RB | 866 | CG4565-RB | 19..829 | 17..827 | 4055 | 100 | Plus |
CG6567-RB | 1017 | CG6567-RB | 801..942 | 810..669 | 710 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:47:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10852742..10853397 | 17..672 | 3280 | 100 | Plus |
3R | 32079331 | 3R | 10853449..10853607 | 669..827 | 795 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:47:49 has no hits.
BS04464.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:32:02 Download gff for
BS04464.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4565-RB | 1..810 | 17..826 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:16:10 Download gff for
BS04464.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4565-RB | 19..839 | 17..836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:52:01 Download gff for
BS04464.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4565-RB | 19..820 | 17..818 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:32:02 Download gff for
BS04464.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4565-RB | 19..839 | 17..836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:18:51 Download gff for
BS04464.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4565-RB | 19..820 | 17..818 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:18:51 Download gff for
BS04464.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10852742..10853396 | 17..671 | 100 | -> | Plus |
3R | 10853452..10853598 | 672..818 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:52:01 Download gff for
BS04464.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6678464..6679118 | 17..671 | 100 | -> | Plus |
arm_3R | 6679174..6679320 | 672..818 | 100 | | Plus |
BS04464.pep Sequence
Translation from 16 to 825
> BS04464.pep
MDESETAPNDDYEHPDGLDYILESVLMPSDGSKEFKFLADEYNSVLLNPC
HCKGACENSEVCAHGGQYEFTEDGSELILRNSANPVIECNDMCKCCRNTC
SNRLVYSGPRKHLEIFDSPVYGSKGLRTTAKITKGGYICEYAGELLTVPE
ARSRLHDNEKLGLMNYILVLNEYTSDKKQQVTIVDPSRRGNIGRYLNHSC
EPNCHIAAVRIDCPIPKIGIFAARDIAAKEELCFHYGGEGQYKKMTGGKT
CLCGASKCTGFMPNTEIEE*
BS04464.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:03:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4565-PB | 269 | CG4565-PB | 1..269 | 1..269 | 1470 | 100 | Plus |
G9a-PA | 1637 | CG2995-PA | 1398..1599 | 50..258 | 250 | 31.1 | Plus |
G9a-PB | 1657 | CG2995-PB | 1418..1619 | 50..258 | 250 | 31.1 | Plus |
Su(var)3-9-PA | 635 | CG43664-PA | 412..630 | 50..258 | 231 | 30.1 | Plus |
Mes-4-PB | 1423 | CG4976-PB | 1207..1368 | 88..260 | 216 | 32.2 | Plus |