Clone BS04464 Report

Search the DGRC for BS04464

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:44
Well:64
Vector:pDNR-Dual
Associated Gene/TranscriptCG4565-RB
Protein status:BS04464.pep: gold
Sequenced Size:16

Clone Sequence Records

BS04464.3prime Sequence

840 bp (813 high quality bases) assembled on 2005-12-01

> BS04464.3prime
ATGGTCTAGAAAGCTTTTATTCTTCTATTTCAGTATTTGGCATGAAACCC
GTGCATTTTGAAGCACCACAGAGGCAAGTCTTTCCACCTGTCATCTTTTT
ATACTGCCCTTCTCCGCCATAATGAAAGCATAACTCCTCCTTGGCCGCAA
TATCCCTTGCTGCGAAAATACCTATTTTTGGTATGGGACAGTCTATTCGT
ACAGCTGCTATATGACAGTTCGGTTCGCAGCTGTGGTTCAGGTAGCGTCC
GATGTTTCCACGTCTTGATGGATCAACGATGGTCACCTGTTGCTTCTTGT
CGCTAGTGTATTCATTAAGCACCAGGATATAGTTCATCAGGCCTAGTTTT
TCATTATCATGCAAGCGGCTTCTTGCCTCGGGAACCGTTAAAAGTTCTCC
GGCATATTCGCAAATGTATCCTCCTTTTGTAATTTTCGCTGTAGTCCGTA
GTCCTTTGGATCCGTACACGGGCGAATCGAATATTTCCAAATGTTTCCTC
GGGCCTGAGTACACAAGCCGATTGGAGCACGTGTTTCTACAGCATTTGCA
CATGTCATTGCACTCAATGACAGGATTTGCGGAATTCCGAAGAATTAATT
CGCTGCCATCTTCTGTGAACTCATATTGGCCTCCATGTGCACAGACTTCG
CTGTTTTCGCAGGCTCCTTTGCAGTGACAGGGGTTCAAAAGAACAGAATT
GTACTCGTCCGCCAAGAATTTGAATTCTTTACTTCCATCGCTGGGCATCA
ACACAGATTCCAATATGTAATCGAGTCCATCTGGGTGCTCATAGTCGTCA
TTCGGAGCTGTTTCAGATTCGTCCATGTCGACTGATAACT

BS04464.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG4565-PA 672 CG4565-RA 1..656 826..171 3280 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:09:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG4565-RB 866 CG4565-RB 19..829 826..16 4055 100 Minus
CG6567-RB 1017 CG6567-RB 801..942 33..174 710 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:08:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10852742..10853397 826..171 3280 100 Minus
3R 32079331 3R 10853449..10853607 174..16 795 100 Minus
Blast to na_te.dros performed on 2015-02-03 13:09:01 has no hits.

BS04464.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:49:06 Download gff for BS04464.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4565-PA 1..662 165..826 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:10:49 Download gff for BS04464.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4565-PA 1..662 165..826 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:57:22 Download gff for BS04464.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4565-RB 19..839 7..826 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:47:15 Download gff for BS04464.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4565-RB 19..839 7..826 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:47:15 Download gff for BS04464.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 10852742..10853396 172..826 100 -> Minus
3R 10853452..10853617 7..171 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:57:22 Download gff for BS04464.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6678464..6679118 172..826 100 -> Minus
arm_3R 6679174..6679339 7..171 97   Minus

BS04464.5prime Sequence

840 bp (728 high quality bases) assembled on 2005-12-01

> BS04464.5prime
GAAGTTATCAGTCGACATGGACGAATCTGAAACAGCTCCGAATGACGACT
ATGAGCACCCAGATGGACTCGATTACATATTGGAATCTGTGTTGATGCCC
AGCGATGGAAGTAAAGAATTCAAATTCTTGGCGGACGAGTACAATTCTGT
TCTTTTGAACCCCTGTCACTGCAAAGGAGCCTGCGAAAACAGCGAAGTCT
GTGCACATGGAGGCCAATATGAGTTCACAGAAGATGGCAGCGAATTAATT
CTTCGGAATTCCGCAAATCCTGTCATTGAGTGCAATGACATGTGCAAATG
CTGTAGAAACACGTGCTCCAATCGGCTTGTGTACTCAGGCCCGAGGAAAC
ATTTGGAAATATTCGATTCGCCCGTGTACGGATCCAAAGGACTACGGACT
ACAGCGAAAATTACAAAAGGAGGATACATTTGCGAATATGCCGGAGAACT
TTTAACGGTTCCCGAGGCAAGAAGCCGCTTGCATGATAATGAAAAACTAG
GCCTGATGAACTATATCCTGGTGCTTAATGAATACACTAGCGACAAGAAG
CAACAGGTGACCATCGTTGATCCATCAAGACGTGGAAACATCGGACGCTA
CCTGAACCACAGCTGCGAACCGAACTGTCATATAGCAGCTGTACGAATAG
ACTGTCCCATACCAAAAATAGGTATTTTCGCAGCAAGGGATATTGCGGCC
AAGGAGGAGTTATGCTTTCATTATGGCGGAGAAGGGCAGTATAAAAAGAT
GACAGGTGGAAAGACTTGCCTCTGTGGTGCTTCAAAATGCACGGGTTTCA
TGCCAAATACTGAAATAGAAGAATAAAAGCTTTCTAGACC

BS04464.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG4565-PA 672 CG4565-RA 1..656 17..672 3280 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:26:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG4565-RB 866 CG4565-RB 19..829 17..827 4055 100 Plus
CG6567-RB 1017 CG6567-RB 801..942 810..669 710 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:26:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10852742..10853397 17..672 3280 100 Plus
3R 32079331 3R 10853449..10853607 669..827 795 100 Plus
Blast to na_te.dros performed on 2015-02-12 05:26:41 has no hits.

BS04464.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:49:07 Download gff for BS04464.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4565-PA 1..662 17..678 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:10:51 Download gff for BS04464.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4565-PA 1..662 17..678 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:18:30 Download gff for BS04464.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4565-RB 19..839 17..836 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:26:09 Download gff for BS04464.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4565-RB 19..839 17..836 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:26:09 Download gff for BS04464.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 10852742..10853396 17..671 100 -> Plus
3R 10853452..10853617 672..836 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:18:30 Download gff for BS04464.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6678464..6679118 17..671 100 -> Plus
arm_3R 6679174..6679339 672..836 97   Plus

BS04464.complete Sequence

842 bp (842 high quality bases) assembled on 2005-09-13

GenBank Submission: FJ634949

> BS04464.complete
GAAGTTATCAGTCGACATGGACGAATCTGAAACAGCTCCGAATGACGACT
ATGAGCACCCAGATGGACTCGATTACATATTGGAATCTGTGTTGATGCCC
AGCGATGGAAGTAAAGAATTCAAATTCTTGGCGGACGAGTACAATTCTGT
TCTTTTGAACCCCTGTCACTGCAAAGGAGCCTGCGAAAACAGCGAAGTCT
GTGCACATGGAGGCCAATATGAGTTCACAGAAGATGGCAGCGAATTAATT
CTTCGGAATTCCGCAAATCCTGTCATTGAGTGCAATGACATGTGCAAATG
CTGTAGAAACACGTGCTCCAATCGGCTTGTGTACTCAGGCCCGAGGAAAC
ATTTGGAAATATTCGATTCGCCCGTGTACGGATCCAAAGGACTACGGACT
ACAGCGAAAATTACAAAAGGAGGATACATTTGCGAATATGCCGGAGAACT
TTTAACGGTTCCCGAGGCAAGAAGCCGCTTGCATGATAATGAAAAACTAG
GCCTGATGAACTATATCCTGGTGCTTAATGAATACACTAGCGACAAGAAG
CAACAGGTGACCATCGTTGATCCATCAAGACGTGGAAACATCGGACGCTA
CCTGAACCACAGCTGCGAACCGAACTGTCATATAGCAGCTGTACGAATAG
ACTGTCCCATACCAAAAATAGGTATTTTCGCAGCAAGGGATATTGCGGCC
AAGGAGGAGTTATGCTTTCATTATGGCGGAGAAGGGCAGTATAAAAAGAT
GACAGGTGGAAAGACTTGCCTCTGTGGTGCTTCAAAATGCACGGGTTTCA
TGCCAAATACTGAAATAGAAGAATAAAAGCTTTCTAGACCAT

BS04464.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:47:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG4565-RB 810 CG4565-PB 1..810 17..826 4050 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:47:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG4565-RB 866 CG4565-RB 19..829 17..827 4055 100 Plus
CG6567-RB 1017 CG6567-RB 801..942 810..669 710 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:47:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10852742..10853397 17..672 3280 100 Plus
3R 32079331 3R 10853449..10853607 669..827 795 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:47:49 has no hits.

BS04464.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:32:02 Download gff for BS04464.complete
Subject Subject Range Query Range Percent Splice Strand
CG4565-RB 1..810 17..826 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:16:10 Download gff for BS04464.complete
Subject Subject Range Query Range Percent Splice Strand
CG4565-RB 19..839 17..836 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:52:01 Download gff for BS04464.complete
Subject Subject Range Query Range Percent Splice Strand
CG4565-RB 19..820 17..818 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:32:02 Download gff for BS04464.complete
Subject Subject Range Query Range Percent Splice Strand
CG4565-RB 19..839 17..836 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:18:51 Download gff for BS04464.complete
Subject Subject Range Query Range Percent Splice Strand
CG4565-RB 19..820 17..818 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:18:51 Download gff for BS04464.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10852742..10853396 17..671 100 -> Plus
3R 10853452..10853598 672..818 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:52:01 Download gff for BS04464.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6678464..6679118 17..671 100 -> Plus
arm_3R 6679174..6679320 672..818 100   Plus

BS04464.pep Sequence

Translation from 16 to 825

> BS04464.pep
MDESETAPNDDYEHPDGLDYILESVLMPSDGSKEFKFLADEYNSVLLNPC
HCKGACENSEVCAHGGQYEFTEDGSELILRNSANPVIECNDMCKCCRNTC
SNRLVYSGPRKHLEIFDSPVYGSKGLRTTAKITKGGYICEYAGELLTVPE
ARSRLHDNEKLGLMNYILVLNEYTSDKKQQVTIVDPSRRGNIGRYLNHSC
EPNCHIAAVRIDCPIPKIGIFAARDIAAKEELCFHYGGEGQYKKMTGGKT
CLCGASKCTGFMPNTEIEE*

BS04464.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:03:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG4565-PB 269 CG4565-PB 1..269 1..269 1470 100 Plus
G9a-PA 1637 CG2995-PA 1398..1599 50..258 250 31.1 Plus
G9a-PB 1657 CG2995-PB 1418..1619 50..258 250 31.1 Plus
Su(var)3-9-PA 635 CG43664-PA 412..630 50..258 231 30.1 Plus
Mes-4-PB 1423 CG4976-PB 1207..1368 88..260 216 32.2 Plus