Clone BS04465 Report

Search the DGRC for BS04465

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:44
Well:65
Vector:pDNR-Dual
Associated Gene/TranscriptCG4956-RA
Protein status:BS04465.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04465.3prime Sequence

916 bp (844 high quality bases) assembled on 2005-12-01

> BS04465.3prime
ATGGTCTAGAAAGCTTTTACACTGTCTGCTTCTGGAACCACTGAGTGCCA
TCGGTAGGAAGAGGACTTGAGATCGTTGGAGAGAAAAAAATCCAGAAGCG
CCGTTTTCCCAAGACCATATCAAAATTTCTTCTCCAACCAACATCATAGC
TGCGATCGAGCATCTTATAGCATGTACTATTCCGATATACCATTATCATT
TGAAAGACGAACATGAAGAGGGGGACGCCAAAAAGAAATAAATTCAGTTT
GAAAAGGTTGGCGATTGTGTACTTCCATTTGAAATCAGCATCTTGGGTTG
TATCCTGGAACATTAGCAACAAAGGATCGACGACCAAAAAGGCCTTGTTT
GTCCAATTCAAAATGCCATTGTAGACGAGCGCCTGTCCGCTGCCAAAGCT
CAGGTGAAACAAGAAGGCAAGGAAATACCTCTGATTTTTATGGCCAATGC
AACTGGCAAAGAAGGTGCAGTGGTGATCCCGCTTCAGAATGCAAATGTTG
CACAAACTACAGTGCCAGGACCTCGGTGGCACCAGCTTTTGGCATGTGGA
GCAGTAGTGCCACAGGTGAGCCTCACCTGCCACAGGATACTGTCTTTCCA
GAACTAAGCTATCGACTGAGGTATTGGTCATACAGCCGAGCCACCAGTTG
CCCAATATATTGATGACTGTATAAATTCCCATAAACCAACACAATTTGTG
CCATATACCATGGGGATCAGTTATTTGCGGCAAAACGTAGCATAATTCAT
AGACAAACAGCAATCCAATCAGACAGAGTAAAAATATTGCACAAAACGGA
TGAAGTAGGCCCATAACTTTTATGCGATGTAGTTGAAAGTGACGATGAAA
CCCTTCCTCGGCTCGAAAACACATTCTTCTACTCCAACCGCAAGTAGATC
TTTATAAAACTCGAAA

BS04465.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG4956-PA 909 CG4956-RA 10..909 916..17 4475 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:08:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG4956-RA 1038 CG4956-RA 86..986 916..16 4490 99.9 Minus
CG17197-RB 1958 CG17197-RB 429..531 531..429 215 80.6 Minus
CG17198-RB 1958 CG17198-RB 429..531 531..429 215 80.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:08:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25777320..25778220 16..916 4490 99.9 Plus
3R 32079331 3R 25774839..25774941 429..531 215 80.6 Plus
Blast to na_te.dros performed on 2015-02-03 13:08:14 has no hits.

BS04465.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:49:08 Download gff for BS04465.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4956-PA 13..909 17..913 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:10:52 Download gff for BS04465.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4956-PA 13..909 17..913 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:57:14 Download gff for BS04465.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4956-RA 89..989 10..913 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:47:07 Download gff for BS04465.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4956-RA 89..989 10..913 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:47:07 Download gff for BS04465.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25777316..25778217 10..913 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:57:14 Download gff for BS04465.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21603038..21603939 10..913 99   Plus

BS04465.5prime Sequence

884 bp (749 high quality bases) assembled on 2005-12-01

> BS04465.5prime
GAAGTTATCAGTCGACATGCTTCGATTTCGAGTTTTATTAAGATCTACTT
GCGGTTGGAGTAGAAGAATGTGTTTTCGAGCCGAGGAAGGGTTTCATCGT
CACTTTCAACTACATCGCATAAAAGTTATGGGCCTACTTCATCCGTTTTG
TGCAATATTTTTACTCTGTCTGATTGGATTGCTGTTTGTCTATGAATTAT
GCTACGTTTTGCCGCAAATAACTGATCCCCATGGTATATGGCACAAATTG
TGTTGGTTTATGGGAATTTATACAGTCATCAATATATTGGGCAACTGGTG
GCTCGGCTGTATGACCAATACCTCAGTCGATAGCTTAGTTCTGGAAAGAC
AGTATCCTGTGGCAGGTGAGGCTCACCTGTGGCACTACTGCTCCACATGC
CAAAAGCTGGTGCCACCGAGGTCCTGGCACTGTAGTTTGTGCAACATTTG
CATTCTGAAGCGGGATCACCACTGCACCTTCTTTGCCAGTTGCATTGGCC
ATAAAAATCAGAGGTATTTCCTTGCCTTCTTGTTTCACCTGAGCTTTGGC
AGCGGACAGGCGCTCGTCTACAATGGCATTTTGAATTGGACAAACAAGGC
CTTTTTGGTCGTCGATCCTTTGTTGCTAATGTTCCAGGATACAACCCAAG
ATGCTGATTTCAAATGGAAGTACACAATCGCCAACCTTTTCAAACTGAAT
TTATTTCTTTTTGGCGTCCCCCTCTTCATGTTCGTCTTTCAAATGATAAT
GGTATATCGGAATAGTACATGCTATAAGATGCTCGATCGCAGCTATGATG
TTGGGTGGAGAAGAAATTTTGATATGGTCTTGGGAAAACGGCGCTTCTGG
ATTTTTTTCTCTCCAACGATCTCAAGTCCTCTTC

BS04465.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG4956-PA 909 CG4956-RA 1..868 17..884 4315 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:15:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG4956-RA 1038 CG4956-RA 77..944 17..884 4325 99.9 Plus
CG17197-RB 1958 CG17197-RB 429..531 411..513 215 80.6 Plus
CG17198-RB 1958 CG17198-RB 429..531 411..513 215 80.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:15:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25777362..25778229 884..17 4325 99.9 Minus
3R 32079331 3R 25774839..25774941 513..411 215 80.6 Minus
Blast to na_te.dros performed on 2015-02-12 05:15:14 has no hits.

BS04465.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:49:10 Download gff for BS04465.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4956-PA 1..868 17..884 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:10:53 Download gff for BS04465.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4956-PA 1..868 17..884 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:30:27 Download gff for BS04465.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4956-RA 77..944 17..884 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:21:01 Download gff for BS04465.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4956-RA 77..944 17..884 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:21:01 Download gff for BS04465.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25777362..25778229 17..884 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:30:27 Download gff for BS04465.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21603084..21603951 17..884 99   Minus

BS04465.complete Sequence

941 bp (941 high quality bases) assembled on 2005-09-13

GenBank Submission: FJ634950

> BS04465.complete
GAAGTTATCAGTCGACATGCTTCGATTTCGAGTTTTATTAAGATCTACTT
GCGGTTGGAGTAGAAGAATGTGTTTTCGAGCCGAGGAAGGGTTTCATCGT
CACTTTCAACTACATCGCATAAAAGTTATGGGCCTACTTCATCCGTTTTG
TGCAATATTTTTACTCTGTCTGATTGGATTGCTGTTTGTCTATGAATTAT
GCTACGTTTTGCCGCAAATAACTGATCCCCATGGTATATGGCACAAATTG
TGTTGGTTTATGGGAATTTATACAGTCATCAATATATTGGGCAACTGGTG
GCTCGGCTGTATGACCAATACCTCAGTCGATAGCTTAGTTCTGGAAAGAC
AGTATCCTGTGGCAGGTGAGGCTCACCTGTGGCACTACTGCTCCACATGC
CAAAAGCTGGTGCCACCGAGGTCCTGGCACTGTAGTTTGTGCAACATTTG
CATTCTGAAGCGGGATCACCACTGCACCTTCTTTGCCAGTTGCATTGGCC
ATAAAAATCAGAGGTATTTCCTTGCCTTCTTGTTTCACCTGAGCTTTGGC
AGCGGACAGGCGCTCGTCTACAATGGCATTTTGAATTGGACAAACAAGGC
CTTTTTGGTCGTCGATCCTTTGTTGCTAATGTTCCAGGATACAACCCAAG
ATGCTGATTTCAAATGGAAGTACACAATCGCCAACCTTTTCAAACTGAAT
TTATTTCTTTTTGGCGTCCCCCTCTTCATGTTCGTCTTTCAAATGATAAT
GGTATATCGGAATAGTACATGCTATAAGATGCTCGATCGCAGCTATGATG
TTGGTTGGAGAAGAAATTTTGATATGGTCTTGGGAAAACGGCGCTTCTGG
ATTTTTTTCTCTCCAACGATCTCAAGTCCTCTTCCTACCGATGGCACTCA
GTGGTTCCAGAAGCAGACAGTGTAAAAGCTTTCTAGACCAT

BS04465.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:22:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG4956-RA 909 CG4956-PA 1..909 17..925 4545 100 Plus
CG17197-RB 873 CG17197-PB 341..443 411..513 215 80.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:22:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG4956-RA 1038 CG4956-RA 77..986 17..926 4550 100 Plus
CG17197-RB 1958 CG17197-RB 429..531 411..513 215 80.6 Plus
CG17198-RB 1958 CG17198-RB 429..531 411..513 215 80.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:22:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25777320..25778229 926..17 4550 100 Minus
3R 32079331 3R 25774839..25774941 513..411 215 80.6 Minus
Blast to na_te.dros performed on 2014-11-28 01:22:03 has no hits.

BS04465.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:32:03 Download gff for BS04465.complete
Subject Subject Range Query Range Percent Splice Strand
CG4956-RA 1..909 17..925 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:16:12 Download gff for BS04465.complete
Subject Subject Range Query Range Percent Splice Strand
CG4956-RA 77..989 17..932 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:47:42 Download gff for BS04465.complete
Subject Subject Range Query Range Percent Splice Strand
CG4956-RA 77..983 17..923 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:32:03 Download gff for BS04465.complete
Subject Subject Range Query Range Percent Splice Strand
CG4956-RA 77..989 17..932 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:52:09 Download gff for BS04465.complete
Subject Subject Range Query Range Percent Splice Strand
CG4956-RA 77..983 17..923 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:52:09 Download gff for BS04465.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25777323..25778229 17..923 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:47:42 Download gff for BS04465.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21603045..21603951 17..923 100   Minus

BS04465.pep Sequence

Translation from 16 to 924

> BS04465.pep
MLRFRVLLRSTCGWSRRMCFRAEEGFHRHFQLHRIKVMGLLHPFCAIFLL
CLIGLLFVYELCYVLPQITDPHGIWHKLCWFMGIYTVINILGNWWLGCMT
NTSVDSLVLERQYPVAGEAHLWHYCSTCQKLVPPRSWHCSLCNICILKRD
HHCTFFASCIGHKNQRYFLAFLFHLSFGSGQALVYNGILNWTNKAFLVVD
PLLLMFQDTTQDADFKWKYTIANLFKLNLFLFGVPLFMFVFQMIMVYRNS
TCYKMLDRSYDVGWRRNFDMVLGKRRFWIFFSPTISSPLPTDGTQWFQKQ
TV*

BS04465.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:12:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG4956-PA 302 CG4956-PA 1..302 1..302 1695 100 Plus
CG17196-PA 276 CG17196-PA 14..274 32..300 546 40.9 Plus
CG17197-PB 290 CG17197-PB 24..271 42..296 542 42 Plus
CG17196-PC 253 CG17196-PC 22..251 63..300 510 42.4 Plus
CG17195-PA 283 CG17195-PA 22..282 40..301 502 37.9 Plus