Clone Sequence Records
BS04465.3prime Sequence
916 bp (844 high quality bases) assembled on 2005-12-01
> BS04465.3prime
ATGGTCTAGAAAGCTTTTACACTGTCTGCTTCTGGAACCACTGAGTGCCA
TCGGTAGGAAGAGGACTTGAGATCGTTGGAGAGAAAAAAATCCAGAAGCG
CCGTTTTCCCAAGACCATATCAAAATTTCTTCTCCAACCAACATCATAGC
TGCGATCGAGCATCTTATAGCATGTACTATTCCGATATACCATTATCATT
TGAAAGACGAACATGAAGAGGGGGACGCCAAAAAGAAATAAATTCAGTTT
GAAAAGGTTGGCGATTGTGTACTTCCATTTGAAATCAGCATCTTGGGTTG
TATCCTGGAACATTAGCAACAAAGGATCGACGACCAAAAAGGCCTTGTTT
GTCCAATTCAAAATGCCATTGTAGACGAGCGCCTGTCCGCTGCCAAAGCT
CAGGTGAAACAAGAAGGCAAGGAAATACCTCTGATTTTTATGGCCAATGC
AACTGGCAAAGAAGGTGCAGTGGTGATCCCGCTTCAGAATGCAAATGTTG
CACAAACTACAGTGCCAGGACCTCGGTGGCACCAGCTTTTGGCATGTGGA
GCAGTAGTGCCACAGGTGAGCCTCACCTGCCACAGGATACTGTCTTTCCA
GAACTAAGCTATCGACTGAGGTATTGGTCATACAGCCGAGCCACCAGTTG
CCCAATATATTGATGACTGTATAAATTCCCATAAACCAACACAATTTGTG
CCATATACCATGGGGATCAGTTATTTGCGGCAAAACGTAGCATAATTCAT
AGACAAACAGCAATCCAATCAGACAGAGTAAAAATATTGCACAAAACGGA
TGAAGTAGGCCCATAACTTTTATGCGATGTAGTTGAAAGTGACGATGAAA
CCCTTCCTCGGCTCGAAAACACATTCTTCTACTCCAACCGCAAGTAGATC
TTTATAAAACTCGAAA
BS04465.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4956-PA | 909 | CG4956-RA | 10..909 | 916..17 | 4475 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:08:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4956-RA | 1038 | CG4956-RA | 86..986 | 916..16 | 4490 | 99.9 | Minus |
CG17197-RB | 1958 | CG17197-RB | 429..531 | 531..429 | 215 | 80.6 | Minus |
CG17198-RB | 1958 | CG17198-RB | 429..531 | 531..429 | 215 | 80.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:08:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25777320..25778220 | 16..916 | 4490 | 99.9 | Plus |
3R | 32079331 | 3R | 25774839..25774941 | 429..531 | 215 | 80.6 | Plus |
Blast to na_te.dros performed on 2015-02-03 13:08:14 has no hits.
BS04465.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:49:08 Download gff for
BS04465.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4956-PA | 13..909 | 17..913 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:10:52 Download gff for
BS04465.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4956-PA | 13..909 | 17..913 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:57:14 Download gff for
BS04465.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4956-RA | 89..989 | 10..913 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:47:07 Download gff for
BS04465.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4956-RA | 89..989 | 10..913 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:47:07 Download gff for
BS04465.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25777316..25778217 | 10..913 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:57:14 Download gff for
BS04465.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21603038..21603939 | 10..913 | 99 | | Plus |
BS04465.5prime Sequence
884 bp (749 high quality bases) assembled on 2005-12-01
> BS04465.5prime
GAAGTTATCAGTCGACATGCTTCGATTTCGAGTTTTATTAAGATCTACTT
GCGGTTGGAGTAGAAGAATGTGTTTTCGAGCCGAGGAAGGGTTTCATCGT
CACTTTCAACTACATCGCATAAAAGTTATGGGCCTACTTCATCCGTTTTG
TGCAATATTTTTACTCTGTCTGATTGGATTGCTGTTTGTCTATGAATTAT
GCTACGTTTTGCCGCAAATAACTGATCCCCATGGTATATGGCACAAATTG
TGTTGGTTTATGGGAATTTATACAGTCATCAATATATTGGGCAACTGGTG
GCTCGGCTGTATGACCAATACCTCAGTCGATAGCTTAGTTCTGGAAAGAC
AGTATCCTGTGGCAGGTGAGGCTCACCTGTGGCACTACTGCTCCACATGC
CAAAAGCTGGTGCCACCGAGGTCCTGGCACTGTAGTTTGTGCAACATTTG
CATTCTGAAGCGGGATCACCACTGCACCTTCTTTGCCAGTTGCATTGGCC
ATAAAAATCAGAGGTATTTCCTTGCCTTCTTGTTTCACCTGAGCTTTGGC
AGCGGACAGGCGCTCGTCTACAATGGCATTTTGAATTGGACAAACAAGGC
CTTTTTGGTCGTCGATCCTTTGTTGCTAATGTTCCAGGATACAACCCAAG
ATGCTGATTTCAAATGGAAGTACACAATCGCCAACCTTTTCAAACTGAAT
TTATTTCTTTTTGGCGTCCCCCTCTTCATGTTCGTCTTTCAAATGATAAT
GGTATATCGGAATAGTACATGCTATAAGATGCTCGATCGCAGCTATGATG
TTGGGTGGAGAAGAAATTTTGATATGGTCTTGGGAAAACGGCGCTTCTGG
ATTTTTTTCTCTCCAACGATCTCAAGTCCTCTTC
BS04465.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4956-PA | 909 | CG4956-RA | 1..868 | 17..884 | 4315 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:15:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4956-RA | 1038 | CG4956-RA | 77..944 | 17..884 | 4325 | 99.9 | Plus |
CG17197-RB | 1958 | CG17197-RB | 429..531 | 411..513 | 215 | 80.6 | Plus |
CG17198-RB | 1958 | CG17198-RB | 429..531 | 411..513 | 215 | 80.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:15:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25777362..25778229 | 884..17 | 4325 | 99.9 | Minus |
3R | 32079331 | 3R | 25774839..25774941 | 513..411 | 215 | 80.6 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:15:14 has no hits.
BS04465.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:49:10 Download gff for
BS04465.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4956-PA | 1..868 | 17..884 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:10:53 Download gff for
BS04465.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4956-PA | 1..868 | 17..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:30:27 Download gff for
BS04465.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4956-RA | 77..944 | 17..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:21:01 Download gff for
BS04465.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4956-RA | 77..944 | 17..884 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:21:01 Download gff for
BS04465.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25777362..25778229 | 17..884 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:30:27 Download gff for
BS04465.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21603084..21603951 | 17..884 | 99 | | Minus |
BS04465.complete Sequence
941 bp (941 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ634950
> BS04465.complete
GAAGTTATCAGTCGACATGCTTCGATTTCGAGTTTTATTAAGATCTACTT
GCGGTTGGAGTAGAAGAATGTGTTTTCGAGCCGAGGAAGGGTTTCATCGT
CACTTTCAACTACATCGCATAAAAGTTATGGGCCTACTTCATCCGTTTTG
TGCAATATTTTTACTCTGTCTGATTGGATTGCTGTTTGTCTATGAATTAT
GCTACGTTTTGCCGCAAATAACTGATCCCCATGGTATATGGCACAAATTG
TGTTGGTTTATGGGAATTTATACAGTCATCAATATATTGGGCAACTGGTG
GCTCGGCTGTATGACCAATACCTCAGTCGATAGCTTAGTTCTGGAAAGAC
AGTATCCTGTGGCAGGTGAGGCTCACCTGTGGCACTACTGCTCCACATGC
CAAAAGCTGGTGCCACCGAGGTCCTGGCACTGTAGTTTGTGCAACATTTG
CATTCTGAAGCGGGATCACCACTGCACCTTCTTTGCCAGTTGCATTGGCC
ATAAAAATCAGAGGTATTTCCTTGCCTTCTTGTTTCACCTGAGCTTTGGC
AGCGGACAGGCGCTCGTCTACAATGGCATTTTGAATTGGACAAACAAGGC
CTTTTTGGTCGTCGATCCTTTGTTGCTAATGTTCCAGGATACAACCCAAG
ATGCTGATTTCAAATGGAAGTACACAATCGCCAACCTTTTCAAACTGAAT
TTATTTCTTTTTGGCGTCCCCCTCTTCATGTTCGTCTTTCAAATGATAAT
GGTATATCGGAATAGTACATGCTATAAGATGCTCGATCGCAGCTATGATG
TTGGTTGGAGAAGAAATTTTGATATGGTCTTGGGAAAACGGCGCTTCTGG
ATTTTTTTCTCTCCAACGATCTCAAGTCCTCTTCCTACCGATGGCACTCA
GTGGTTCCAGAAGCAGACAGTGTAAAAGCTTTCTAGACCAT
BS04465.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:22:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4956-RA | 909 | CG4956-PA | 1..909 | 17..925 | 4545 | 100 | Plus |
CG17197-RB | 873 | CG17197-PB | 341..443 | 411..513 | 215 | 80.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:22:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4956-RA | 1038 | CG4956-RA | 77..986 | 17..926 | 4550 | 100 | Plus |
CG17197-RB | 1958 | CG17197-RB | 429..531 | 411..513 | 215 | 80.6 | Plus |
CG17198-RB | 1958 | CG17198-RB | 429..531 | 411..513 | 215 | 80.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:22:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25777320..25778229 | 926..17 | 4550 | 100 | Minus |
3R | 32079331 | 3R | 25774839..25774941 | 513..411 | 215 | 80.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:22:03 has no hits.
BS04465.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:32:03 Download gff for
BS04465.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4956-RA | 1..909 | 17..925 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:16:12 Download gff for
BS04465.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4956-RA | 77..989 | 17..932 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:47:42 Download gff for
BS04465.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4956-RA | 77..983 | 17..923 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:32:03 Download gff for
BS04465.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4956-RA | 77..989 | 17..932 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:52:09 Download gff for
BS04465.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4956-RA | 77..983 | 17..923 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:52:09 Download gff for
BS04465.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25777323..25778229 | 17..923 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:47:42 Download gff for
BS04465.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21603045..21603951 | 17..923 | 100 | | Minus |
BS04465.pep Sequence
Translation from 16 to 924
> BS04465.pep
MLRFRVLLRSTCGWSRRMCFRAEEGFHRHFQLHRIKVMGLLHPFCAIFLL
CLIGLLFVYELCYVLPQITDPHGIWHKLCWFMGIYTVINILGNWWLGCMT
NTSVDSLVLERQYPVAGEAHLWHYCSTCQKLVPPRSWHCSLCNICILKRD
HHCTFFASCIGHKNQRYFLAFLFHLSFGSGQALVYNGILNWTNKAFLVVD
PLLLMFQDTTQDADFKWKYTIANLFKLNLFLFGVPLFMFVFQMIMVYRNS
TCYKMLDRSYDVGWRRNFDMVLGKRRFWIFFSPTISSPLPTDGTQWFQKQ
TV*
BS04465.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:12:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4956-PA | 302 | CG4956-PA | 1..302 | 1..302 | 1695 | 100 | Plus |
CG17196-PA | 276 | CG17196-PA | 14..274 | 32..300 | 546 | 40.9 | Plus |
CG17197-PB | 290 | CG17197-PB | 24..271 | 42..296 | 542 | 42 | Plus |
CG17196-PC | 253 | CG17196-PC | 22..251 | 63..300 | 510 | 42.4 | Plus |
CG17195-PA | 283 | CG17195-PA | 22..282 | 40..301 | 502 | 37.9 | Plus |