Clone BS04466 Report

Search the DGRC for BS04466

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:44
Well:66
Vector:pDNR-Dual
Associated Gene/Transcriptobsolete transcript model
Protein status:BS04466.pep: validated not full length
Sequenced Size:16

Clone Sequence Records

BS04466.3prime Sequence

829 bp (828 high quality bases) assembled on 2005-12-01

> BS04466.3prime
ATGGTCTAGAAAGCTTTTAATCCGATTTAGTGCCGCATAGGGTTCGCCGC
AGGTGTCGCCCAAGACTGGACTTTTGTGTGTATCGGGTTGAGCAGTGTGA
ACACTTGTAGGGTTTTTCCCCCGTATGCGTTCGCAAGTGTTCCTGGTGTT
CTGCGCTTCTCGCAAACAATTTTGAGCAGTGCGAACACTTGAAGGGCAAT
TCTCCCGTGTGCGTTCGCAAATGCATGTGAAGAGTCGAGCTAGTTGTATA
GGACTTCGAGCAGTGGGGACACTCGAATTGGTTTTTTCCAGTATGCTCTT
GCAGGTGCACCAGCAGTTGCGAGCTTAGTTTAAACTCCTTCGAGCAGTAG
GAACACTTGGGTACCTTTTCTCCAATATGATCAAGCATATGCACCCGAAG
ATGCGTACGACATTTGAAGTCCTTGAAACAGTGGGTACACTTAAAGGGCC
GCTCTCCCGTATGCACTTGCTGATGCTCCACAAGATGTGACTTCTTGAAG
AAAGATTTCGAGCATTCGGCGCACTTGTACTGTCGCTCTCTTGTATGCAA
ACGCACGTGGACTCGATAAAGTGACCTCATGGCAAAGGTGGCTGAGCACT
GGGAACACTTCAGGGGCTCTTTTCCAGCGTGCTCAAGTAAGTGTAGTTGA
AGTCTCGAATTCCTTGCAAAGGTCTCTGAGCAATGGGGACACTTGAACGG
GTCTTCGCCCGCGTGCACTCGCAAATGAATTTGCAAACTATCATTCTGCA
GAAAAGTCTTCGGGCACTGGGTACACTTAAAGGATCGTTCGGCGTGCGTC
AGCAAGTGCTTTTGTAGAATTGATCTTAG

BS04466.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG5245-PA 1506 CG5245-RA 694..1506 829..17 4065 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:16:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG5245-RA 1623 CG5245-RA 751..1565 829..15 4075 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:15:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12430363..12431177 829..15 4075 100 Minus
Blast to na_te.dros performed on 2015-02-02 19:16:02 has no hits.

BS04466.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:49:11 Download gff for BS04466.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5245-PA 694..1506 17..829 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:10:54 Download gff for BS04466.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5245-PA 694..1506 17..829 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:16:24 Download gff for BS04466.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5245-RA 751..1573 6..829 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:58:18 Download gff for BS04466.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5245-RA 751..1573 6..829 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:58:18 Download gff for BS04466.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12430363..12431185 6..829 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:16:24 Download gff for BS04466.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8256085..8256907 6..829 99   Minus

BS04466.5prime Sequence

846 bp (824 high quality bases) assembled on 2005-12-01

> BS04466.5prime
GAAGTTATCAGTCGACATGGATCTGGCGAACGTAGATCAACGCCCCGTGA
AGGACGAACCACCTCAAGAAGACACTTTCGAAGAAGAATTAATCTTCATT
TCTAACAGCGACTTCGAAGAGCTTGAAAGCGAAATAAAGATTGAGAACTT
CTGTAGTTATGGCAAAGATTTGGAGCCAGTTAAAGGCGTCCCGTCGAAGC
TGAAGACGTGTAAATCCAAAATAGCAAAGAAGCGCCCCTTGCGAAAGCAA
ACAGATACGTTTAAGTGTACCCAATGCCAAAAGACGTTTACAAGAAAGGA
AAACCTCGAATCACACTTGCGACTTCACGCAGAAGAACGTCCGTTCGAGT
GTTCCCACTGCTCAAAAACCTTTACCCAGAATTCATCGCTTAAACAACAT
CTGCATGAGCACACAGGAGAGCGCCCCTTTAAGTGTACCCAGTGCTCGAC
GTCGTTCGCGCGAAAATCTCATCTTCAGGTACACTTACGTACGCATAGTG
AAGAACGACCCTTTGAGTGTACCCATTGCGAAAAGGCATTTAAAAACAAT
TCACATCTCCAGGAACACTTGCGAACGCATCAGGAGGCACGGCCCTTTAA
GTGTTCCCACTGCTCAAAGAGTTTTAAGCTAAGATCAATTCTACAAAAGC
ACTTGCTGACGCACGCCGAACGATCCTTTAAGTGTACCCAGTGCCCGAAG
ACTTTTCTGCAGAATGATAGTTTGCAAATTCATTTGCGAGTGCACGCGGG
CGAAGACCCGTTCAAGTGTCCCCATTGCTCAGAGACCTTTGCAAGGAATT
CGAGACTTCAACTACACTTACTTGAGCACGCTGGAAAAGAGCCCCT

BS04466.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG5245-PA 1506 CG5245-RA 413..911 348..846 2495 100 Plus
CG5245-PA 1506 CG5245-RA 1..347 17..363 1735 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:32:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG5245-RA 1623 CG5245-RA 470..968 348..846 2495 100 Plus
CG5245-RA 1623 CG5245-RA 58..414 17..373 1740 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 00:32:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12430082..12430580 348..846 2495 100 Plus
3R 32079331 3R 12429670..12430026 17..373 1740 99.2 Plus
Blast to na_te.dros performed 2015-02-10 00:32:41
Subject Length Description Subject Range Query Range Score Percent Strand
Cr1a 4470 Cr1a DMCR1A 4470bp 1342..1379 611..648 109 76.3 Plus

BS04466.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:49:12 Download gff for BS04466.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5245-PA 1..334 17..349 99   Plus
CG5245-PA 415..911 350..846 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:10:56 Download gff for BS04466.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5245-PA 1..334 17..349 99 -> Plus
CG5245-PA 415..911 350..846 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:37:33 Download gff for BS04466.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5245-RA 44..391 1..349 98 -> Plus
CG5245-RA 472..968 350..846 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 01:04:45 Download gff for BS04466.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5245-RA 44..391 1..349 98 -> Plus
CG5245-RA 472..968 350..846 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 01:04:45 Download gff for BS04466.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12429662..12430003 8..349 98 -> Plus
3R 12430084..12430580 350..846 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:37:33 Download gff for BS04466.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8255384..8255725 8..349 98 -> Plus
arm_3R 8255806..8256302 350..846 100   Plus

BS04466.complete Sequence

1457 bp (1457 high quality bases) assembled on 2005-09-13

> BS04466.complete
GAAGTTATCAGTCGACATGGATCTGGCGAACGTAGATCAACGCCCCGTGA
AGGACGAACCACCTCAAGAAGACACTTTCGAAGAAGAATTAATCTTCATT
TCTAACAGCGACTTCGAAGAGCTTGAAAGCGAAATAAAGATTGAGAACTT
CTGTAGTTATGGCAAAGATTTGGAGCCAGTTAAAGGCGTCCCGTCGAAGC
TGAAGACGTGTAAATCCAAAATAGCAAAGAAGCGCCCCTTGCGAAAGCAA
ACAGATACGTTTAAGTGTACCCAATGCCAAAAGACGTTTACAAGAAAGGA
AAACCTCGAATCACACTTGCGACTTCACGCAGAAGAACGTCCGTTCGAGT
GTTCCCACTGCTCAAAAACCTTTACCCAGAATTCATCGCTTAAACAACAT
CTGCATGAGCACACAGGAGAGCGCCCCTTTAAGTGTACCCAGTGCTCGAC
GTCGTTCGCGCGAAAATCTCATCTTCAGGTACACTTACGTACGCATAGTG
AAGAACGACCCTTTGAGTGTACCCATTGCGAAAAGGCATTTAAAAACAAT
TCACATCTCCAGGAACACTTGCGAACGCATCAGGAGGCACGGCCCTTTAA
GTGTTCCCACTGCTCAAAGAGTTTTAAGCTAAGATCAATTCTACAAAAGC
ACTTGCTGACGCACGCCGAACGATCCTTTAAGTGTACCCAGTGCCCGAAG
ACTTTTCTGCAGAATGATAGTTTGCAAATTCATTTGCGAGTGCACGCGGG
CGAAGACCCGTTCAAGTGTCCCCATTGCTCAGAGACCTTTGCAAGGAATT
CGAGACTTCAACTACACTTACTTGAGCACGCTGGAAAAGAGCCCCTGAAG
TGTTCCCAGTGCTCAGCCACCTTTGCCATGAGGTCACTTTATCGAGTCCA
CGTGCGTTTGCATACAAGAGAGCGACAGTACAAGTGCGCCGAATGCTCGA
AATCTTTCTTCAAGAAGTCACATCTTGTGGAGCATCAGCAAGTGCATACG
GGAGAGCGGCCCTTTAAGTGTACCCACTGTTTCAAGGACTTCAAATGTCG
TACGCATCTTCGGGTGCATATGCTTGATCATATTGGAGAAAAGGTACCCA
AGTGTTCCTACTGCTCGAAGGAGTTTAAACTAAGCTCGCAACTGCTGGTG
CACCTGCAAGAGCATACTGGAAAAAACCAATTCGAGTGTCCCCACTGCTC
GAAGTCCTATACAACTAGCTCGACTCTTCACATGCATTTGCGAACGCACA
CGGGAGAATTGCCCTTCAAGTGTTCGCACTGCTCAAAATTGTTTGCGAGA
AGCGCAGAACACCAGGAACACTTGCGAACGCATACGGGGGAAAAACCCTA
CAAGTGTTCACACTGCTCAACCCGATACACACAAAAGTCCAGTCTTGGGC
GACACCTGCGGCGAACCCTATGCGGCACTAAATCGGATTAAAAGCTTTCT
AGACCAT

BS04466.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:23:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG5245-RA 1506 CG5245-PA 413..1506 348..1441 5470 100 Plus
CG5245-RA 1506 CG5245-PA 1..357 17..373 1740 99.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:23:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG5245-RA 1623 CG5245-RA 470..1565 348..1443 5480 100 Plus
CG5245-RA 1623 CG5245-RA 58..414 17..373 1740 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:23:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12430082..12431177 348..1443 5480 100 Plus
3R 32079331 3R 12429670..12430026 17..373 1740 99.2 Plus
Blast to na_te.dros performed on 2014-11-27 14:23:26 has no hits.

BS04466.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:32:04 Download gff for BS04466.complete
Subject Subject Range Query Range Percent Splice Strand
CG5245-RA 1..334 17..349 99 -> Plus
CG5245-RA 415..1506 350..1441 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:16:14 Download gff for BS04466.complete
Subject Subject Range Query Range Percent Splice Strand
CG5245-RA 19..366 1..349 98 -> Plus
CG5245-RA 447..1548 350..1452 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:41:42 Download gff for BS04466.complete
Subject Subject Range Query Range Percent Splice Strand
CG5245-RA 58..391 17..349 99 -> Plus
CG5245-RA 472..1561 350..1439 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:32:05 Download gff for BS04466.complete
Subject Subject Range Query Range Percent Splice Strand
CG5245-RA 1..334 17..349 99 -> Plus
CG5245-RA 415..1506 350..1441 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:10:22 Download gff for BS04466.complete
Subject Subject Range Query Range Percent Splice Strand
CG5245-RA 58..391 17..349 99 -> Plus
CG5245-RA 472..1561 350..1439 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:10:22 Download gff for BS04466.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12429670..12430003 17..349 99 -> Plus
3R 12430084..12431173 350..1439 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:41:42 Download gff for BS04466.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8255392..8255725 17..349 99 -> Plus
arm_3R 8255806..8256895 350..1439 100   Plus

BS04466.pep Sequence

Translation from 16 to 1440

> BS04466.pep
MDLANVDQRPVKDEPPQEDTFEEELIFISNSDFEELESEIKIENFCSYGK
DLEPVKGVPSKLKTCKSKIAKKRPLRKQTDTFKCTQCQKTFTRKENLESH
LRLHAEERPFECSHCSKTFTQNSSLKQHLHEHTGERPFKCTQCSTSFARK
SHLQVHLRTHSEERPFECTHCEKAFKNNSHLQEHLRTHQEARPFKCSHCS
KSFKLRSILQKHLLTHAERSFKCTQCPKTFLQNDSLQIHLRVHAGEDPFK
CPHCSETFARNSRLQLHLLEHAGKEPLKCSQCSATFAMRSLYRVHVRLHT
RERQYKCAECSKSFFKKSHLVEHQQVHTGERPFKCTHCFKDFKCRTHLRV
HMLDHIGEKVPKCSYCSKEFKLSSQLLVHLQEHTGKNQFECPHCSKSYTT
SSTLHMHLRTHTGELPFKCSHCSKLFARSAEHQEHLRTHTGEKPYKCSHC
STRYTQKSSLGRHLRRTLCGTKSD*

BS04466.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:40:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG5245-PA 501 CG5245-PA 1..501 1..474 2574 94.6 Plus
crol-PI 962 CG14938-PI 298..722 76..465 849 36.5 Plus
crol-PE 962 CG14938-PE 298..722 76..465 849 36.5 Plus
crol-PA 962 CG14938-PA 298..722 76..465 849 36.5 Plus
crol-PB 891 CG14938-PB 240..640 73..472 848 36.7 Plus
crol-PI 962 CG14938-PI 240..640 73..472 848 36.7 Plus
crol-PE 962 CG14938-PE 240..640 73..472 848 36.7 Plus
crol-PB 891 CG14938-PB 298..686 76..457 829 38.8 Plus
crol-PB 891 CG14938-PB 218..606 79..466 820 35.5 Plus
crol-PB 891 CG14938-PB 277..662 82..465 820 36.8 Plus
crol-PI 962 CG14938-PI 218..606 79..466 820 35.5 Plus
crol-PE 962 CG14938-PE 218..606 79..466 820 35.5 Plus
crol-PI 962 CG14938-PI 388..722 59..381 681 38.5 Plus
crol-PE 962 CG14938-PE 388..722 59..381 681 38.5 Plus
crol-PB 891 CG14938-PB 388..686 59..345 612 38.1 Plus
crol-PI 962 CG14938-PI 444..724 59..327 522 34.9 Plus
crol-PE 962 CG14938-PE 444..724 59..327 522 34.9 Plus