Clone Sequence Records
BS04466.3prime Sequence
829 bp (828 high quality bases) assembled on 2005-12-01
> BS04466.3prime
ATGGTCTAGAAAGCTTTTAATCCGATTTAGTGCCGCATAGGGTTCGCCGC
AGGTGTCGCCCAAGACTGGACTTTTGTGTGTATCGGGTTGAGCAGTGTGA
ACACTTGTAGGGTTTTTCCCCCGTATGCGTTCGCAAGTGTTCCTGGTGTT
CTGCGCTTCTCGCAAACAATTTTGAGCAGTGCGAACACTTGAAGGGCAAT
TCTCCCGTGTGCGTTCGCAAATGCATGTGAAGAGTCGAGCTAGTTGTATA
GGACTTCGAGCAGTGGGGACACTCGAATTGGTTTTTTCCAGTATGCTCTT
GCAGGTGCACCAGCAGTTGCGAGCTTAGTTTAAACTCCTTCGAGCAGTAG
GAACACTTGGGTACCTTTTCTCCAATATGATCAAGCATATGCACCCGAAG
ATGCGTACGACATTTGAAGTCCTTGAAACAGTGGGTACACTTAAAGGGCC
GCTCTCCCGTATGCACTTGCTGATGCTCCACAAGATGTGACTTCTTGAAG
AAAGATTTCGAGCATTCGGCGCACTTGTACTGTCGCTCTCTTGTATGCAA
ACGCACGTGGACTCGATAAAGTGACCTCATGGCAAAGGTGGCTGAGCACT
GGGAACACTTCAGGGGCTCTTTTCCAGCGTGCTCAAGTAAGTGTAGTTGA
AGTCTCGAATTCCTTGCAAAGGTCTCTGAGCAATGGGGACACTTGAACGG
GTCTTCGCCCGCGTGCACTCGCAAATGAATTTGCAAACTATCATTCTGCA
GAAAAGTCTTCGGGCACTGGGTACACTTAAAGGATCGTTCGGCGTGCGTC
AGCAAGTGCTTTTGTAGAATTGATCTTAG
BS04466.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5245-PA | 1506 | CG5245-RA | 694..1506 | 829..17 | 4065 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:16:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5245-RA | 1623 | CG5245-RA | 751..1565 | 829..15 | 4075 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:15:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12430363..12431177 | 829..15 | 4075 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 19:16:02 has no hits.
BS04466.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:49:11 Download gff for
BS04466.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5245-PA | 694..1506 | 17..829 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:10:54 Download gff for
BS04466.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5245-PA | 694..1506 | 17..829 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:16:24 Download gff for
BS04466.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5245-RA | 751..1573 | 6..829 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:58:18 Download gff for
BS04466.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5245-RA | 751..1573 | 6..829 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:58:18 Download gff for
BS04466.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12430363..12431185 | 6..829 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:16:24 Download gff for
BS04466.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8256085..8256907 | 6..829 | 99 | | Minus |
BS04466.5prime Sequence
846 bp (824 high quality bases) assembled on 2005-12-01
> BS04466.5prime
GAAGTTATCAGTCGACATGGATCTGGCGAACGTAGATCAACGCCCCGTGA
AGGACGAACCACCTCAAGAAGACACTTTCGAAGAAGAATTAATCTTCATT
TCTAACAGCGACTTCGAAGAGCTTGAAAGCGAAATAAAGATTGAGAACTT
CTGTAGTTATGGCAAAGATTTGGAGCCAGTTAAAGGCGTCCCGTCGAAGC
TGAAGACGTGTAAATCCAAAATAGCAAAGAAGCGCCCCTTGCGAAAGCAA
ACAGATACGTTTAAGTGTACCCAATGCCAAAAGACGTTTACAAGAAAGGA
AAACCTCGAATCACACTTGCGACTTCACGCAGAAGAACGTCCGTTCGAGT
GTTCCCACTGCTCAAAAACCTTTACCCAGAATTCATCGCTTAAACAACAT
CTGCATGAGCACACAGGAGAGCGCCCCTTTAAGTGTACCCAGTGCTCGAC
GTCGTTCGCGCGAAAATCTCATCTTCAGGTACACTTACGTACGCATAGTG
AAGAACGACCCTTTGAGTGTACCCATTGCGAAAAGGCATTTAAAAACAAT
TCACATCTCCAGGAACACTTGCGAACGCATCAGGAGGCACGGCCCTTTAA
GTGTTCCCACTGCTCAAAGAGTTTTAAGCTAAGATCAATTCTACAAAAGC
ACTTGCTGACGCACGCCGAACGATCCTTTAAGTGTACCCAGTGCCCGAAG
ACTTTTCTGCAGAATGATAGTTTGCAAATTCATTTGCGAGTGCACGCGGG
CGAAGACCCGTTCAAGTGTCCCCATTGCTCAGAGACCTTTGCAAGGAATT
CGAGACTTCAACTACACTTACTTGAGCACGCTGGAAAAGAGCCCCT
BS04466.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5245-PA | 1506 | CG5245-RA | 413..911 | 348..846 | 2495 | 100 | Plus |
CG5245-PA | 1506 | CG5245-RA | 1..347 | 17..363 | 1735 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:32:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5245-RA | 1623 | CG5245-RA | 470..968 | 348..846 | 2495 | 100 | Plus |
CG5245-RA | 1623 | CG5245-RA | 58..414 | 17..373 | 1740 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 00:32:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12430082..12430580 | 348..846 | 2495 | 100 | Plus |
3R | 32079331 | 3R | 12429670..12430026 | 17..373 | 1740 | 99.2 | Plus |
Blast to na_te.dros performed 2015-02-10 00:32:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cr1a | 4470 | Cr1a DMCR1A 4470bp | 1342..1379 | 611..648 | 109 | 76.3 | Plus |
BS04466.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:49:12 Download gff for
BS04466.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5245-PA | 1..334 | 17..349 | 99 | | Plus |
CG5245-PA | 415..911 | 350..846 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:10:56 Download gff for
BS04466.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5245-PA | 1..334 | 17..349 | 99 | -> | Plus |
CG5245-PA | 415..911 | 350..846 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:37:33 Download gff for
BS04466.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5245-RA | 44..391 | 1..349 | 98 | -> | Plus |
CG5245-RA | 472..968 | 350..846 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 01:04:45 Download gff for
BS04466.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5245-RA | 44..391 | 1..349 | 98 | -> | Plus |
CG5245-RA | 472..968 | 350..846 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 01:04:45 Download gff for
BS04466.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12429662..12430003 | 8..349 | 98 | -> | Plus |
3R | 12430084..12430580 | 350..846 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:37:33 Download gff for
BS04466.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8255384..8255725 | 8..349 | 98 | -> | Plus |
arm_3R | 8255806..8256302 | 350..846 | 100 | | Plus |
BS04466.complete Sequence
1457 bp (1457 high quality bases) assembled on 2005-09-13
> BS04466.complete
GAAGTTATCAGTCGACATGGATCTGGCGAACGTAGATCAACGCCCCGTGA
AGGACGAACCACCTCAAGAAGACACTTTCGAAGAAGAATTAATCTTCATT
TCTAACAGCGACTTCGAAGAGCTTGAAAGCGAAATAAAGATTGAGAACTT
CTGTAGTTATGGCAAAGATTTGGAGCCAGTTAAAGGCGTCCCGTCGAAGC
TGAAGACGTGTAAATCCAAAATAGCAAAGAAGCGCCCCTTGCGAAAGCAA
ACAGATACGTTTAAGTGTACCCAATGCCAAAAGACGTTTACAAGAAAGGA
AAACCTCGAATCACACTTGCGACTTCACGCAGAAGAACGTCCGTTCGAGT
GTTCCCACTGCTCAAAAACCTTTACCCAGAATTCATCGCTTAAACAACAT
CTGCATGAGCACACAGGAGAGCGCCCCTTTAAGTGTACCCAGTGCTCGAC
GTCGTTCGCGCGAAAATCTCATCTTCAGGTACACTTACGTACGCATAGTG
AAGAACGACCCTTTGAGTGTACCCATTGCGAAAAGGCATTTAAAAACAAT
TCACATCTCCAGGAACACTTGCGAACGCATCAGGAGGCACGGCCCTTTAA
GTGTTCCCACTGCTCAAAGAGTTTTAAGCTAAGATCAATTCTACAAAAGC
ACTTGCTGACGCACGCCGAACGATCCTTTAAGTGTACCCAGTGCCCGAAG
ACTTTTCTGCAGAATGATAGTTTGCAAATTCATTTGCGAGTGCACGCGGG
CGAAGACCCGTTCAAGTGTCCCCATTGCTCAGAGACCTTTGCAAGGAATT
CGAGACTTCAACTACACTTACTTGAGCACGCTGGAAAAGAGCCCCTGAAG
TGTTCCCAGTGCTCAGCCACCTTTGCCATGAGGTCACTTTATCGAGTCCA
CGTGCGTTTGCATACAAGAGAGCGACAGTACAAGTGCGCCGAATGCTCGA
AATCTTTCTTCAAGAAGTCACATCTTGTGGAGCATCAGCAAGTGCATACG
GGAGAGCGGCCCTTTAAGTGTACCCACTGTTTCAAGGACTTCAAATGTCG
TACGCATCTTCGGGTGCATATGCTTGATCATATTGGAGAAAAGGTACCCA
AGTGTTCCTACTGCTCGAAGGAGTTTAAACTAAGCTCGCAACTGCTGGTG
CACCTGCAAGAGCATACTGGAAAAAACCAATTCGAGTGTCCCCACTGCTC
GAAGTCCTATACAACTAGCTCGACTCTTCACATGCATTTGCGAACGCACA
CGGGAGAATTGCCCTTCAAGTGTTCGCACTGCTCAAAATTGTTTGCGAGA
AGCGCAGAACACCAGGAACACTTGCGAACGCATACGGGGGAAAAACCCTA
CAAGTGTTCACACTGCTCAACCCGATACACACAAAAGTCCAGTCTTGGGC
GACACCTGCGGCGAACCCTATGCGGCACTAAATCGGATTAAAAGCTTTCT
AGACCAT
BS04466.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:23:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5245-RA | 1506 | CG5245-PA | 413..1506 | 348..1441 | 5470 | 100 | Plus |
CG5245-RA | 1506 | CG5245-PA | 1..357 | 17..373 | 1740 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:23:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5245-RA | 1623 | CG5245-RA | 470..1565 | 348..1443 | 5480 | 100 | Plus |
CG5245-RA | 1623 | CG5245-RA | 58..414 | 17..373 | 1740 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:23:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12430082..12431177 | 348..1443 | 5480 | 100 | Plus |
3R | 32079331 | 3R | 12429670..12430026 | 17..373 | 1740 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:23:26 has no hits.
BS04466.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:32:04 Download gff for
BS04466.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5245-RA | 1..334 | 17..349 | 99 | -> | Plus |
CG5245-RA | 415..1506 | 350..1441 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:16:14 Download gff for
BS04466.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5245-RA | 19..366 | 1..349 | 98 | -> | Plus |
CG5245-RA | 447..1548 | 350..1452 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:41:42 Download gff for
BS04466.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5245-RA | 58..391 | 17..349 | 99 | -> | Plus |
CG5245-RA | 472..1561 | 350..1439 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:32:05 Download gff for
BS04466.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5245-RA | 1..334 | 17..349 | 99 | -> | Plus |
CG5245-RA | 415..1506 | 350..1441 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:10:22 Download gff for
BS04466.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5245-RA | 58..391 | 17..349 | 99 | -> | Plus |
CG5245-RA | 472..1561 | 350..1439 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:10:22 Download gff for
BS04466.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12429670..12430003 | 17..349 | 99 | -> | Plus |
3R | 12430084..12431173 | 350..1439 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:41:42 Download gff for
BS04466.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8255392..8255725 | 17..349 | 99 | -> | Plus |
arm_3R | 8255806..8256895 | 350..1439 | 100 | | Plus |
BS04466.pep Sequence
Translation from 16 to 1440
> BS04466.pep
MDLANVDQRPVKDEPPQEDTFEEELIFISNSDFEELESEIKIENFCSYGK
DLEPVKGVPSKLKTCKSKIAKKRPLRKQTDTFKCTQCQKTFTRKENLESH
LRLHAEERPFECSHCSKTFTQNSSLKQHLHEHTGERPFKCTQCSTSFARK
SHLQVHLRTHSEERPFECTHCEKAFKNNSHLQEHLRTHQEARPFKCSHCS
KSFKLRSILQKHLLTHAERSFKCTQCPKTFLQNDSLQIHLRVHAGEDPFK
CPHCSETFARNSRLQLHLLEHAGKEPLKCSQCSATFAMRSLYRVHVRLHT
RERQYKCAECSKSFFKKSHLVEHQQVHTGERPFKCTHCFKDFKCRTHLRV
HMLDHIGEKVPKCSYCSKEFKLSSQLLVHLQEHTGKNQFECPHCSKSYTT
SSTLHMHLRTHTGELPFKCSHCSKLFARSAEHQEHLRTHTGEKPYKCSHC
STRYTQKSSLGRHLRRTLCGTKSD*
BS04466.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:40:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5245-PA | 501 | CG5245-PA | 1..501 | 1..474 | 2574 | 94.6 | Plus |
crol-PI | 962 | CG14938-PI | 298..722 | 76..465 | 849 | 36.5 | Plus |
crol-PE | 962 | CG14938-PE | 298..722 | 76..465 | 849 | 36.5 | Plus |
crol-PA | 962 | CG14938-PA | 298..722 | 76..465 | 849 | 36.5 | Plus |
crol-PB | 891 | CG14938-PB | 240..640 | 73..472 | 848 | 36.7 | Plus |
crol-PI | 962 | CG14938-PI | 240..640 | 73..472 | 848 | 36.7 | Plus |
crol-PE | 962 | CG14938-PE | 240..640 | 73..472 | 848 | 36.7 | Plus |
crol-PB | 891 | CG14938-PB | 298..686 | 76..457 | 829 | 38.8 | Plus |
crol-PB | 891 | CG14938-PB | 218..606 | 79..466 | 820 | 35.5 | Plus |
crol-PB | 891 | CG14938-PB | 277..662 | 82..465 | 820 | 36.8 | Plus |
crol-PI | 962 | CG14938-PI | 218..606 | 79..466 | 820 | 35.5 | Plus |
crol-PE | 962 | CG14938-PE | 218..606 | 79..466 | 820 | 35.5 | Plus |
crol-PI | 962 | CG14938-PI | 388..722 | 59..381 | 681 | 38.5 | Plus |
crol-PE | 962 | CG14938-PE | 388..722 | 59..381 | 681 | 38.5 | Plus |
crol-PB | 891 | CG14938-PB | 388..686 | 59..345 | 612 | 38.1 | Plus |
crol-PI | 962 | CG14938-PI | 444..724 | 59..327 | 522 | 34.9 | Plus |
crol-PE | 962 | CG14938-PE | 444..724 | 59..327 | 522 | 34.9 | Plus |