Clone Sequence Records
BS04467.3prime Sequence
974 bp (832 high quality bases) assembled on 2005-12-01
> BS04467.3prime
ATGGTCTAGAAAGCTTTCAGACCTCCAGGGCCAGTTCCTCCTCATCATCC
TCGTCCCGCTCTCGTTCCCTTTCGCGCTCCCGCTCGATGTCTCGCTCCTC
GTCCCGCTCCCTGTCCTCCTCCTCGTTGATGCGCTCCCGATGCGGCGGGC
TACCCGGATTCAGGGGCGGACTGGGCGTGATTAGACGCTGGCGACTGCTG
CTGCTGGTCCGCTCGCAGTCCGCTTCGCTATTGGCGCTCTGGCTGGTCGC
TGGGGAGCGGGAAGCTGCTGGCGGCTGTTGCTGCTGCTGTTGGGCACCGG
CGGATGCGGCCGCTGCCGCAGCAGCGGCATAGTAGCCGCTGAGCATGGGT
GCTGCGCCGGGTGGCGGGGGAGCGGGCATGCCCGGTAGCGACATGCCCGG
CGGTATGCTTGATTGATACATGCGGTACGAGGCGGGAAGCGAAGGCTTTT
GCATGGCCGCTGCAGCGGCTGCCTGGCGGTAATAGATATCGATCGCGGAG
GGCGTGGCCCCGTGGGGCGATTGGGCGGCAGCGGCGGCCGCGTATGGCCA
GGCGCTCAAATAGGGCGTGGCACCGCCGTAAAGCCGCTGGAAGGCCGCAT
AGTTTCCAGCCTCGGCCAGCAGTTCCAAGCCAACCGCCGTCTGACGCTTC
CATTTGGTTCTGCGATTCTGGTACCAGGTCTTCACCTGGCAGTCGCTCAG
CTCCAGCTTGTTGGCCAGCTCCATGCGATCCTGCACGCTGAGGTACTTCT
GCCGCTCGAAGGACTTCTCCAGCGTCTGCAGCTGGTGATCCGTGAAGGCG
GTACGCGCCTTTCGCTGCTTCTTGCTGAGGCTCAGGCTCAAGTGCGACGA
GGAGTCGCCGTTTGCCGAGCTGCCGTTTTTCATACTGTCATCTCCATCGT
CGTCTTTGCAACGCAATCATCGCTGTCGCTGTCGTCGATTGTGCTGGCTT
GATCGCCGCTAATGCTGCTGCCGG
BS04467.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5488-PA | 1938 | B-H2-RA | 1046..1938 | 909..17 | 4465 | 100 | Minus |
CG5529-PA | 1635 | B-H1-RA | 886..1067 | 826..645 | 560 | 92.3 | Minus |
CG5488-PA | 1938 | B-H2-RA | 980..1042 | 974..912 | 315 | 100 | Minus |
CG11085-PA | 828 | CG11085-RA | 547..590 | 688..645 | 145 | 93.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:42:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
B-H2-RA | 3102 | CG5488-RA | 1269..2227 | 974..17 | 4755 | 99.8 | Minus |
B-H2-RB | 3142 | CG5488-RB | 1375..2267 | 909..17 | 4465 | 100 | Minus |
B-H1-RB | 2724 | CG5529-RB | 1107..1483 | 826..444 | 960 | 83.9 | Minus |
B-H2-RB | 3142 | CG5488-RB | 1269..1331 | 974..912 | 315 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:42:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17322650..17323300 | 667..17 | 3240 | 99.8 | Minus |
X | 23542271 | X | 17320842..17321091 | 909..660 | 1250 | 100 | Minus |
X | 23542271 | X | 17401527..17401693 | 826..660 | 625 | 91.6 | Minus |
X | 23542271 | X | 17315849..17315911 | 974..912 | 315 | 100 | Minus |
X | 23542271 | X | 17401824..17402037 | 663..444 | 275 | 78 | Minus |
Blast to na_te.dros performed 2015-01-31 14:42:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6891 | 362..196 | 171 | 61.1 | Minus |
Burdock | 6411 | Burdock DMU89994 6411bp Derived from U89994 (g1905850) (Rel. 51, Last updated, Version 1). | 739..771 | 189..221 | 111 | 81.8 | Plus |
BS04467.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:49:13 Download gff for
BS04467.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
B-H2-PA | 980..1938 | 17..974 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:10:57 Download gff for
BS04467.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5488-PA | 980..1938 | 17..974 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:20:25 Download gff for
BS04467.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
B-H2-RA | 1269..2233 | 12..974 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:37:56 Download gff for
BS04467.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
B-H2-RA | 1269..2233 | 12..974 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:37:56 Download gff for
BS04467.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17315849..17315911 | 912..974 | 100 | -> | Minus |
X | 17320839..17321091 | 660..911 | 99 | -> | Minus |
X | 17322658..17323306 | 12..659 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:20:25 Download gff for
BS04467.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17209882..17209944 | 912..974 | 100 | -> | Minus |
arm_X | 17214872..17215124 | 660..911 | 99 | -> | Minus |
arm_X | 17216691..17217339 | 12..659 | 99 | | Minus |
BS04467.5prime Sequence
835 bp (782 high quality bases) assembled on 2005-12-01
> BS04467.5prime
GAAGTTATCAGTCGACATGACCACAATGCCACCGGAAATGTCCGCAACAA
CGGCAGCTCCCGTTGGCAGTGCACCGAGTGCCACCGCTCATCATCCCGCT
GCCGTCGGCGGCGGTATGCCGCGTCCAGCTTCCCCGGCCGTCGGCAGCAA
CACGACGACAGCCACGGCCACAACGGCGACGCGATCCCGCTTTATGATCA
CCGATATTTTGGCAGGAGCCGCGGCCGCATCGGCGGCGGCAGCAGCAGCG
GCGGCCGCCTTGGCAGCCGCCTCTTCCGGCGGTGGGCGTGGCAGTCCGAC
GGACTCGGAGCGGGAGCAATCGCTGGTCGCCCAGCATCACCACCATCACC
AGCAGCAGCAACAACACCATCATCACCAGCAGCAGCAGCAGCAGCAGCAA
CATCAGCAGGCTGCCCTGCAACAGTACATCGTGCAACAGCAGCAGTTGCT
GCGCTTTGAACGGGAAAGGGAGAGGGAGCGGGAGCGGGAACACTATAGGG
AGAGACATTCGCCGCCTGGCAACAATCCCTATGCCCACCACCCCATGCCG
CCCCATCTGCTCGCCCACTTTCCGCCCGCCCACTACGCCGTGCTGCAGCA
GCAGCAACAGCAACAGCAGCAACAGCAACATCCCCACCCGCATCATCTGC
AGCTTGAGAGGGAACGATTGGAGGCACTGCATCGGCATGGCCACGGGCTG
ACCGGTGATCCTGCCCAGCACTTGAGCCACTTAAGCCACCTGAGCCACCA
GCAGCACCATCCGCATCTGCATCATCCCATGCACGATGAGCGATCCCGGT
CACCGCTGATGCTGCAACAATTGGGCGGTAACGGT
BS04467.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5488-PA | 1938 | B-H2-RA | 1..819 | 17..835 | 4095 | 100 | Plus |
CG5058-PG | 2190 | grh-RG | 420..485 | 334..399 | 180 | 90.9 | Plus |
CG5058-PC | 3909 | grh-RC | 2232..2297 | 334..399 | 180 | 90.9 | Plus |
CG5058-PD | 4002 | grh-RD | 2232..2297 | 334..399 | 180 | 90.9 | Plus |
CG8765-PB | 1803 | CG8765-RB | 349..392 | 587..630 | 170 | 95.4 | Plus |
CG6064-PA | 2394 | TORC-RA | 1930..1998 | 332..400 | 170 | 89.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:14:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
B-H2-RB | 3142 | CG5488-RB | 288..1108 | 15..835 | 4105 | 100 | Plus |
B-H2-RA | 3102 | CG5488-RA | 288..1108 | 15..835 | 4105 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:14:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17314868..17315688 | 15..835 | 4105 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 22:14:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2327..2521 | 212..408 | 205 | 57.4 | Plus |
TART-A | 13424 | TART-A 13424bp | 11094..11151 | 215..271 | 116 | 71.2 | Plus |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 632..713 | 313..228 | 113 | 64 | Minus |
BS04467.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:49:14 Download gff for
BS04467.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
B-H2-PA | 1..819 | 17..835 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:10:59 Download gff for
BS04467.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5488-PA | 1..819 | 17..835 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:48:10 Download gff for
BS04467.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
B-H2-RA | 285..1108 | 9..835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:55:11 Download gff for
BS04467.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
B-H2-RA | 285..1108 | 9..835 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:55:11 Download gff for
BS04467.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17314865..17315688 | 9..835 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:48:10 Download gff for
BS04467.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17208898..17209721 | 9..835 | 99 | | Plus |
BS04467.complete Sequence
1970 bp assembled on 2008-01-02
GenBank Submission: KX799961
> BS04467.complete
GAAGTTATCAGTCGACATGACCACAATGCCACCGGAAATGTCCGCAACAA
CGGCAGCTCCCGTTGGCAGTGCACCGAGTGCCACCGCTCATCATCCCGCT
GCCGTCGGCGGCGGTATGCCGCGTCCAGCTTCCCCGGCCGTCGGCAGCAA
CACGACGACAGCCACGGCCACAACGGCGACGCGATCCCGCTTTATGATCA
CCGATATTTTGGCAGGAGCCGCGGCCGCATCGGCGGCGGCAGCAGCAGCG
GCGGCCGCCTTGGCAGCCGCCTCTTCCGGCGGTGGGCGTGGCAGTCCGAC
GGACTCGGAGCGGGAGCAATCGCTGGTCGCCCAGCATCACCACCATCACC
AGCAGCAGCAACAACACCATCATCACCAGCAGCAGCAGCAGCAGCAGCAA
CATCAGCAGGCTGCCCTGCAACAGTACATCGTGCAACAGCAGCAGTTGCT
GCGCTTTGAACGGGAAAGGGAGAGGGAGCGGGAGCGGGAACACTATAGGG
AGAGACATTCGCCGCCTGGCAACAATCCCTATGCCCACCACCCCATGCCG
CCCCATCTGCTCGCCCACTTTCCGCCCGCCCACTACGCCGTGCTGCAGCA
GCAGCAACAGCAACAGCAGCAACAGCAACATCCCCACCCGCATCATCTGC
AGCTTGAGAGGGAACGATTGGAGGCACTGCATCGGCATGGCCACGGGCTG
ACCGGTGATCCTGCCCAGCACTTGAGCCACTTAAGCCACCTGAGCCACCA
GCAGCACCATCCGCATCTGCATCATCCCATGCACGATGAGCGATCCCGGT
CACCGCTGATGCTGCAACAATTGGGCGGTAACGGTGGCAATAACAACAAC
AATAACAACAACAGCAGCAGTGCCAGTAACAACAACAACAACAACAACAA
CAGTGCTAGTGCCAACAGCAACATCATCAGCGGCAACAGCAGCAGCAGCA
ACAACAACAATGGCAGTGGCAACGGCAACATGTTGCTCGGAGGACCCGGC
AGCAGCATTAGCGGCGATCAAGCCAGCACAATCGACGACAGCGACAGCGA
TGATTGCGGTGGCAAAGACGACGATGGAGATGACAGTATGAAAAACGGCA
GCTCGGCAAACGGCGACTCCTCGTCGCACTTGAGCCTGAGCCTCAGCAAG
AAGCAGCGAAAGGCGCGTACCGCCTTCACGGATCACCAGCTGCAGACGCT
GGAGAAGTCCTTCGAGCGGCAGAAGTACCTCAGCGTGCAGGATCGCATGG
AGCTGGCCAACAAGCTGGAGCTGAGCGACTGCCAGGTGAAGACCTGGTAC
CAGAATCGCAGAACCAAATGGAAGCGTCAGACGGCGGTTGGCTTGGAACT
GCTGGCCGAGGCTGGAAACTATGCGGCCTTCCAGCGGCTTTACGGCGGTG
CCACGCCCTATTTGAGCGCCTGGCCATACGCGGCCGCCGCTGCCGCCCAA
TCGCCCCACGGGGCCACGCCCTCCGCGATCGATATCTATTACCGCCAGGC
AGCCGCTGCAGCGGCCATGCAAAAGCCTTCGCTTCCCGCCTCGTACCGCA
TGTATCAATCAAGCATACCGCCGGGCATGTCGCTACCGGGCATGCCCGCT
CCCCCGCCACCCGGCGCAGCACCCATGCTCAGCGGCTACTATGCCGCTGC
TGCGGCAGCGGCCGCATCCGCCGGTGCCCAACAGCAGCAGCAACAGCCGC
CAGCAGCTTCCCGCTCCCCAGCGACCAGCCAGAGCGCCAATAGCGAAGCG
GACTGCGAGCGGACCAGCAGCAGCAGTCGCCAGCGTCTAATCACGCCCAG
TCCGCCCCTGAATCCGGGTAGCCCGCCGCATCGGGAGCGCATCAACGAGG
AGGAGGACAGGGAGCGGGACGAGGAGCGAGACATCGAGCGGGAGCGCGAA
AGGGAACGAGAGCGGGACGAGGATGATGAGGAGGAACTGGCCCTGGAGGT
CTGAAAGCTTTCTAGACCAT
BS04467.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:51:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
B-H2-RA | 1938 | CG5488-PA | 1..1938 | 17..1954 | 9690 | 100 | Plus |
B-H2-RB | 912 | CG5488-PB | 16..912 | 1058..1954 | 4485 | 100 | Plus |
B-H1-RA | 1635 | CG5529-PA | 886..1262 | 1145..1527 | 880 | 83.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:51:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
B-H2-RA | 3102 | CG5488-RA | 288..2227 | 15..1954 | 9700 | 100 | Plus |
B-H2-RB | 3142 | CG5488-RB | 288..1332 | 15..1059 | 5225 | 100 | Plus |
B-H2-RB | 3142 | CG5488-RB | 1371..2267 | 1058..1954 | 4485 | 100 | Plus |
B-H1-RB | 2724 | CG5529-RB | 1107..1483 | 1145..1527 | 880 | 83.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:51:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17314868..17315913 | 15..1060 | 5230 | 100 | Plus |
X | 23542271 | X | 17322650..17323300 | 1304..1954 | 3240 | 99.8 | Plus |
X | 23542271 | X | 17320838..17321091 | 1058..1311 | 1270 | 100 | Plus |
X | 23542271 | X | 17401527..17401693 | 1145..1311 | 625 | 91.6 | Plus |
X | 23542271 | X | 17401824..17402037 | 1308..1527 | 275 | 78 | Plus |
Blast to na_te.dros performed 2014-11-26 16:51:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2327..2999 | 212..903 | 225 | 52.6 | Plus |
TART-A | 13424 | TART-A 13424bp | 11094..11151 | 215..271 | 116 | 71.2 | Plus |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 632..713 | 313..228 | 113 | 64 | Minus |
BS04467.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:05:07 Download gff for
BS04467.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
B-H2-RA | 1..1938 | 17..1954 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:32:28 Download gff for
BS04467.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
B-H2-RA | 290..2226 | 17..1953 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:11:41 Download gff for
BS04467.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
B-H2-RA | 290..2226 | 17..1953 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:05:07 Download gff for
BS04467.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
B-H2-RA | 285..2233 | 9..1959 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:29:10 Download gff for
BS04467.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
B-H2-RA | 290..2226 | 17..1953 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:29:10 Download gff for
BS04467.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17314870..17315911 | 17..1058 | 100 | -> | Plus |
X | 17320839..17321091 | 1059..1311 | 100 | -> | Plus |
X | 17322658..17323299 | 1312..1953 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:11:41 Download gff for
BS04467.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17208903..17209944 | 17..1058 | 100 | -> | Plus |
arm_X | 17214872..17215124 | 1059..1311 | 100 | -> | Plus |
arm_X | 17216691..17217332 | 1312..1953 | 100 | | Plus |
BS04467.pep Sequence
Translation from 16 to 1953
> BS04467.pep
MTTMPPEMSATTAAPVGSAPSATAHHPAAVGGGMPRPASPAVGSNTTTAT
ATTATRSRFMITDILAGAAAASAAAAAAAAALAAASSGGGRGSPTDSERE
QSLVAQHHHHHQQQQQHHHHQQQQQQQQHQQAALQQYIVQQQQLLRFERE
REREREREHYRERHSPPGNNPYAHHPMPPHLLAHFPPAHYAVLQQQQQQQ
QQQQHPHPHHLQLERERLEALHRHGHGLTGDPAQHLSHLSHLSHQQHHPH
LHHPMHDERSRSPLMLQQLGGNGGNNNNNNNNSSSASNNNNNNNNSASAN
SNIISGNSSSSNNNNGSGNGNMLLGGPGSSISGDQASTIDDSDSDDCGGK
DDDGDDSMKNGSSANGDSSSHLSLSLSKKQRKARTAFTDHQLQTLEKSFE
RQKYLSVQDRMELANKLELSDCQVKTWYQNRRTKWKRQTAVGLELLAEAG
NYAAFQRLYGGATPYLSAWPYAAAAAAQSPHGATPSAIDIYYRQAAAAAA
MQKPSLPASYRMYQSSIPPGMSLPGMPAPPPPGAAPMLSGYYAAAAAAAA
SAGAQQQQQQPPAASRSPATSQSANSEADCERTSSSSRQRLITPSPPLNP
GSPPHRERINEEEDRERDEERDIERERERERERDEDDEEELALEV*
BS04467.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:39:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
B-H2-PA | 645 | CG5488-PA | 1..645 | 1..645 | 3390 | 100 | Plus |
B-H2-PB | 303 | CG5488-PB | 6..303 | 348..645 | 1535 | 100 | Plus |
B-H1-PA | 544 | CG5529-PA | 11..541 | 95..617 | 744 | 39.8 | Plus |
Scr-PB | 417 | CG1030-PB | 70..382 | 167..438 | 276 | 27.8 | Plus |
Scr-PA | 417 | CG1030-PA | 70..382 | 167..438 | 276 | 27.8 | Plus |