Clone BS04467 Report

Search the DGRC for BS04467

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:44
Well:67
Vector:pDNR-Dual
Associated Gene/TranscriptB-H2-RA
Protein status:BS04467.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04467.3prime Sequence

974 bp (832 high quality bases) assembled on 2005-12-01

> BS04467.3prime
ATGGTCTAGAAAGCTTTCAGACCTCCAGGGCCAGTTCCTCCTCATCATCC
TCGTCCCGCTCTCGTTCCCTTTCGCGCTCCCGCTCGATGTCTCGCTCCTC
GTCCCGCTCCCTGTCCTCCTCCTCGTTGATGCGCTCCCGATGCGGCGGGC
TACCCGGATTCAGGGGCGGACTGGGCGTGATTAGACGCTGGCGACTGCTG
CTGCTGGTCCGCTCGCAGTCCGCTTCGCTATTGGCGCTCTGGCTGGTCGC
TGGGGAGCGGGAAGCTGCTGGCGGCTGTTGCTGCTGCTGTTGGGCACCGG
CGGATGCGGCCGCTGCCGCAGCAGCGGCATAGTAGCCGCTGAGCATGGGT
GCTGCGCCGGGTGGCGGGGGAGCGGGCATGCCCGGTAGCGACATGCCCGG
CGGTATGCTTGATTGATACATGCGGTACGAGGCGGGAAGCGAAGGCTTTT
GCATGGCCGCTGCAGCGGCTGCCTGGCGGTAATAGATATCGATCGCGGAG
GGCGTGGCCCCGTGGGGCGATTGGGCGGCAGCGGCGGCCGCGTATGGCCA
GGCGCTCAAATAGGGCGTGGCACCGCCGTAAAGCCGCTGGAAGGCCGCAT
AGTTTCCAGCCTCGGCCAGCAGTTCCAAGCCAACCGCCGTCTGACGCTTC
CATTTGGTTCTGCGATTCTGGTACCAGGTCTTCACCTGGCAGTCGCTCAG
CTCCAGCTTGTTGGCCAGCTCCATGCGATCCTGCACGCTGAGGTACTTCT
GCCGCTCGAAGGACTTCTCCAGCGTCTGCAGCTGGTGATCCGTGAAGGCG
GTACGCGCCTTTCGCTGCTTCTTGCTGAGGCTCAGGCTCAAGTGCGACGA
GGAGTCGCCGTTTGCCGAGCTGCCGTTTTTCATACTGTCATCTCCATCGT
CGTCTTTGCAACGCAATCATCGCTGTCGCTGTCGTCGATTGTGCTGGCTT
GATCGCCGCTAATGCTGCTGCCGG

BS04467.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG5488-PA 1938 B-H2-RA 1046..1938 909..17 4465 100 Minus
CG5529-PA 1635 B-H1-RA 886..1067 826..645 560 92.3 Minus
CG5488-PA 1938 B-H2-RA 980..1042 974..912 315 100 Minus
CG11085-PA 828 CG11085-RA 547..590 688..645 145 93.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:42:40
Subject Length Description Subject Range Query Range Score Percent Strand
B-H2-RA 3102 CG5488-RA 1269..2227 974..17 4755 99.8 Minus
B-H2-RB 3142 CG5488-RB 1375..2267 909..17 4465 100 Minus
B-H1-RB 2724 CG5529-RB 1107..1483 826..444 960 83.9 Minus
B-H2-RB 3142 CG5488-RB 1269..1331 974..912 315 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:42:31
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17322650..17323300 667..17 3240 99.8 Minus
X 23542271 X 17320842..17321091 909..660 1250 100 Minus
X 23542271 X 17401527..17401693 826..660 625 91.6 Minus
X 23542271 X 17315849..17315911 974..912 315 100 Minus
X 23542271 X 17401824..17402037 663..444 275 78 Minus
Blast to na_te.dros performed 2015-01-31 14:42:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6891 362..196 171 61.1 Minus
Burdock 6411 Burdock DMU89994 6411bp Derived from U89994 (g1905850) (Rel. 51, Last updated, Version 1). 739..771 189..221 111 81.8 Plus

BS04467.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:49:13 Download gff for BS04467.3prime
Subject Subject Range Query Range Percent Splice Strand
B-H2-PA 980..1938 17..974 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:10:57 Download gff for BS04467.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5488-PA 980..1938 17..974 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:20:25 Download gff for BS04467.3prime
Subject Subject Range Query Range Percent Splice Strand
B-H2-RA 1269..2233 12..974 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:37:56 Download gff for BS04467.3prime
Subject Subject Range Query Range Percent Splice Strand
B-H2-RA 1269..2233 12..974 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:37:56 Download gff for BS04467.3prime
Subject Subject Range Query Range Percent Splice Strand
X 17315849..17315911 912..974 100 -> Minus
X 17320839..17321091 660..911 99 -> Minus
X 17322658..17323306 12..659 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:20:25 Download gff for BS04467.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17209882..17209944 912..974 100 -> Minus
arm_X 17214872..17215124 660..911 99 -> Minus
arm_X 17216691..17217339 12..659 99   Minus

BS04467.5prime Sequence

835 bp (782 high quality bases) assembled on 2005-12-01

> BS04467.5prime
GAAGTTATCAGTCGACATGACCACAATGCCACCGGAAATGTCCGCAACAA
CGGCAGCTCCCGTTGGCAGTGCACCGAGTGCCACCGCTCATCATCCCGCT
GCCGTCGGCGGCGGTATGCCGCGTCCAGCTTCCCCGGCCGTCGGCAGCAA
CACGACGACAGCCACGGCCACAACGGCGACGCGATCCCGCTTTATGATCA
CCGATATTTTGGCAGGAGCCGCGGCCGCATCGGCGGCGGCAGCAGCAGCG
GCGGCCGCCTTGGCAGCCGCCTCTTCCGGCGGTGGGCGTGGCAGTCCGAC
GGACTCGGAGCGGGAGCAATCGCTGGTCGCCCAGCATCACCACCATCACC
AGCAGCAGCAACAACACCATCATCACCAGCAGCAGCAGCAGCAGCAGCAA
CATCAGCAGGCTGCCCTGCAACAGTACATCGTGCAACAGCAGCAGTTGCT
GCGCTTTGAACGGGAAAGGGAGAGGGAGCGGGAGCGGGAACACTATAGGG
AGAGACATTCGCCGCCTGGCAACAATCCCTATGCCCACCACCCCATGCCG
CCCCATCTGCTCGCCCACTTTCCGCCCGCCCACTACGCCGTGCTGCAGCA
GCAGCAACAGCAACAGCAGCAACAGCAACATCCCCACCCGCATCATCTGC
AGCTTGAGAGGGAACGATTGGAGGCACTGCATCGGCATGGCCACGGGCTG
ACCGGTGATCCTGCCCAGCACTTGAGCCACTTAAGCCACCTGAGCCACCA
GCAGCACCATCCGCATCTGCATCATCCCATGCACGATGAGCGATCCCGGT
CACCGCTGATGCTGCAACAATTGGGCGGTAACGGT

BS04467.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG5488-PA 1938 B-H2-RA 1..819 17..835 4095 100 Plus
CG5058-PG 2190 grh-RG 420..485 334..399 180 90.9 Plus
CG5058-PC 3909 grh-RC 2232..2297 334..399 180 90.9 Plus
CG5058-PD 4002 grh-RD 2232..2297 334..399 180 90.9 Plus
CG8765-PB 1803 CG8765-RB 349..392 587..630 170 95.4 Plus
CG6064-PA 2394 TORC-RA 1930..1998 332..400 170 89.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:14:14
Subject Length Description Subject Range Query Range Score Percent Strand
B-H2-RB 3142 CG5488-RB 288..1108 15..835 4105 100 Plus
B-H2-RA 3102 CG5488-RA 288..1108 15..835 4105 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:14:06
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17314868..17315688 15..835 4105 100 Plus
Blast to na_te.dros performed 2015-02-10 22:14:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2327..2521 212..408 205 57.4 Plus
TART-A 13424 TART-A 13424bp 11094..11151 215..271 116 71.2 Plus
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 632..713 313..228 113 64 Minus

BS04467.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:49:14 Download gff for BS04467.5prime
Subject Subject Range Query Range Percent Splice Strand
B-H2-PA 1..819 17..835 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:10:59 Download gff for BS04467.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5488-PA 1..819 17..835 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:48:10 Download gff for BS04467.5prime
Subject Subject Range Query Range Percent Splice Strand
B-H2-RA 285..1108 9..835 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:55:11 Download gff for BS04467.5prime
Subject Subject Range Query Range Percent Splice Strand
B-H2-RA 285..1108 9..835 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:55:11 Download gff for BS04467.5prime
Subject Subject Range Query Range Percent Splice Strand
X 17314865..17315688 9..835 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:48:10 Download gff for BS04467.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17208898..17209721 9..835 99   Plus

BS04467.complete Sequence

1970 bp assembled on 2008-01-02

GenBank Submission: KX799961

> BS04467.complete
GAAGTTATCAGTCGACATGACCACAATGCCACCGGAAATGTCCGCAACAA
CGGCAGCTCCCGTTGGCAGTGCACCGAGTGCCACCGCTCATCATCCCGCT
GCCGTCGGCGGCGGTATGCCGCGTCCAGCTTCCCCGGCCGTCGGCAGCAA
CACGACGACAGCCACGGCCACAACGGCGACGCGATCCCGCTTTATGATCA
CCGATATTTTGGCAGGAGCCGCGGCCGCATCGGCGGCGGCAGCAGCAGCG
GCGGCCGCCTTGGCAGCCGCCTCTTCCGGCGGTGGGCGTGGCAGTCCGAC
GGACTCGGAGCGGGAGCAATCGCTGGTCGCCCAGCATCACCACCATCACC
AGCAGCAGCAACAACACCATCATCACCAGCAGCAGCAGCAGCAGCAGCAA
CATCAGCAGGCTGCCCTGCAACAGTACATCGTGCAACAGCAGCAGTTGCT
GCGCTTTGAACGGGAAAGGGAGAGGGAGCGGGAGCGGGAACACTATAGGG
AGAGACATTCGCCGCCTGGCAACAATCCCTATGCCCACCACCCCATGCCG
CCCCATCTGCTCGCCCACTTTCCGCCCGCCCACTACGCCGTGCTGCAGCA
GCAGCAACAGCAACAGCAGCAACAGCAACATCCCCACCCGCATCATCTGC
AGCTTGAGAGGGAACGATTGGAGGCACTGCATCGGCATGGCCACGGGCTG
ACCGGTGATCCTGCCCAGCACTTGAGCCACTTAAGCCACCTGAGCCACCA
GCAGCACCATCCGCATCTGCATCATCCCATGCACGATGAGCGATCCCGGT
CACCGCTGATGCTGCAACAATTGGGCGGTAACGGTGGCAATAACAACAAC
AATAACAACAACAGCAGCAGTGCCAGTAACAACAACAACAACAACAACAA
CAGTGCTAGTGCCAACAGCAACATCATCAGCGGCAACAGCAGCAGCAGCA
ACAACAACAATGGCAGTGGCAACGGCAACATGTTGCTCGGAGGACCCGGC
AGCAGCATTAGCGGCGATCAAGCCAGCACAATCGACGACAGCGACAGCGA
TGATTGCGGTGGCAAAGACGACGATGGAGATGACAGTATGAAAAACGGCA
GCTCGGCAAACGGCGACTCCTCGTCGCACTTGAGCCTGAGCCTCAGCAAG
AAGCAGCGAAAGGCGCGTACCGCCTTCACGGATCACCAGCTGCAGACGCT
GGAGAAGTCCTTCGAGCGGCAGAAGTACCTCAGCGTGCAGGATCGCATGG
AGCTGGCCAACAAGCTGGAGCTGAGCGACTGCCAGGTGAAGACCTGGTAC
CAGAATCGCAGAACCAAATGGAAGCGTCAGACGGCGGTTGGCTTGGAACT
GCTGGCCGAGGCTGGAAACTATGCGGCCTTCCAGCGGCTTTACGGCGGTG
CCACGCCCTATTTGAGCGCCTGGCCATACGCGGCCGCCGCTGCCGCCCAA
TCGCCCCACGGGGCCACGCCCTCCGCGATCGATATCTATTACCGCCAGGC
AGCCGCTGCAGCGGCCATGCAAAAGCCTTCGCTTCCCGCCTCGTACCGCA
TGTATCAATCAAGCATACCGCCGGGCATGTCGCTACCGGGCATGCCCGCT
CCCCCGCCACCCGGCGCAGCACCCATGCTCAGCGGCTACTATGCCGCTGC
TGCGGCAGCGGCCGCATCCGCCGGTGCCCAACAGCAGCAGCAACAGCCGC
CAGCAGCTTCCCGCTCCCCAGCGACCAGCCAGAGCGCCAATAGCGAAGCG
GACTGCGAGCGGACCAGCAGCAGCAGTCGCCAGCGTCTAATCACGCCCAG
TCCGCCCCTGAATCCGGGTAGCCCGCCGCATCGGGAGCGCATCAACGAGG
AGGAGGACAGGGAGCGGGACGAGGAGCGAGACATCGAGCGGGAGCGCGAA
AGGGAACGAGAGCGGGACGAGGATGATGAGGAGGAACTGGCCCTGGAGGT
CTGAAAGCTTTCTAGACCAT

BS04467.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:51:48
Subject Length Description Subject Range Query Range Score Percent Strand
B-H2-RA 1938 CG5488-PA 1..1938 17..1954 9690 100 Plus
B-H2-RB 912 CG5488-PB 16..912 1058..1954 4485 100 Plus
B-H1-RA 1635 CG5529-PA 886..1262 1145..1527 880 83.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:51:49
Subject Length Description Subject Range Query Range Score Percent Strand
B-H2-RA 3102 CG5488-RA 288..2227 15..1954 9700 100 Plus
B-H2-RB 3142 CG5488-RB 288..1332 15..1059 5225 100 Plus
B-H2-RB 3142 CG5488-RB 1371..2267 1058..1954 4485 100 Plus
B-H1-RB 2724 CG5529-RB 1107..1483 1145..1527 880 83.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:51:45
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17314868..17315913 15..1060 5230 100 Plus
X 23542271 X 17322650..17323300 1304..1954 3240 99.8 Plus
X 23542271 X 17320838..17321091 1058..1311 1270 100 Plus
X 23542271 X 17401527..17401693 1145..1311 625 91.6 Plus
X 23542271 X 17401824..17402037 1308..1527 275 78 Plus
Blast to na_te.dros performed 2014-11-26 16:51:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2327..2999 212..903 225 52.6 Plus
TART-A 13424 TART-A 13424bp 11094..11151 215..271 116 71.2 Plus
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 632..713 313..228 113 64 Minus

BS04467.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:05:07 Download gff for BS04467.complete
Subject Subject Range Query Range Percent Splice Strand
B-H2-RA 1..1938 17..1954 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:32:28 Download gff for BS04467.complete
Subject Subject Range Query Range Percent Splice Strand
B-H2-RA 290..2226 17..1953 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:11:41 Download gff for BS04467.complete
Subject Subject Range Query Range Percent Splice Strand
B-H2-RA 290..2226 17..1953 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:05:07 Download gff for BS04467.complete
Subject Subject Range Query Range Percent Splice Strand
B-H2-RA 285..2233 9..1959 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:29:10 Download gff for BS04467.complete
Subject Subject Range Query Range Percent Splice Strand
B-H2-RA 290..2226 17..1953 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:29:10 Download gff for BS04467.complete
Subject Subject Range Query Range Percent Splice Strand
X 17314870..17315911 17..1058 100 -> Plus
X 17320839..17321091 1059..1311 100 -> Plus
X 17322658..17323299 1312..1953 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:11:41 Download gff for BS04467.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 17208903..17209944 17..1058 100 -> Plus
arm_X 17214872..17215124 1059..1311 100 -> Plus
arm_X 17216691..17217332 1312..1953 100   Plus

BS04467.pep Sequence

Translation from 16 to 1953

> BS04467.pep
MTTMPPEMSATTAAPVGSAPSATAHHPAAVGGGMPRPASPAVGSNTTTAT
ATTATRSRFMITDILAGAAAASAAAAAAAAALAAASSGGGRGSPTDSERE
QSLVAQHHHHHQQQQQHHHHQQQQQQQQHQQAALQQYIVQQQQLLRFERE
REREREREHYRERHSPPGNNPYAHHPMPPHLLAHFPPAHYAVLQQQQQQQ
QQQQHPHPHHLQLERERLEALHRHGHGLTGDPAQHLSHLSHLSHQQHHPH
LHHPMHDERSRSPLMLQQLGGNGGNNNNNNNNSSSASNNNNNNNNSASAN
SNIISGNSSSSNNNNGSGNGNMLLGGPGSSISGDQASTIDDSDSDDCGGK
DDDGDDSMKNGSSANGDSSSHLSLSLSKKQRKARTAFTDHQLQTLEKSFE
RQKYLSVQDRMELANKLELSDCQVKTWYQNRRTKWKRQTAVGLELLAEAG
NYAAFQRLYGGATPYLSAWPYAAAAAAQSPHGATPSAIDIYYRQAAAAAA
MQKPSLPASYRMYQSSIPPGMSLPGMPAPPPPGAAPMLSGYYAAAAAAAA
SAGAQQQQQQPPAASRSPATSQSANSEADCERTSSSSRQRLITPSPPLNP
GSPPHRERINEEEDRERDEERDIERERERERERDEDDEEELALEV*

BS04467.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:39:49
Subject Length Description Subject Range Query Range Score Percent Strand
B-H2-PA 645 CG5488-PA 1..645 1..645 3390 100 Plus
B-H2-PB 303 CG5488-PB 6..303 348..645 1535 100 Plus
B-H1-PA 544 CG5529-PA 11..541 95..617 744 39.8 Plus
Scr-PB 417 CG1030-PB 70..382 167..438 276 27.8 Plus
Scr-PA 417 CG1030-PA 70..382 167..438 276 27.8 Plus