Clone BS04468 Report

Search the DGRC for BS04468

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:44
Well:68
Vector:pDNR-Dual
Associated Gene/TranscriptHer-RA
Protein status:BS04468.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS04468.3prime Sequence

480 bp (479 high quality bases) assembled on 2005-12-01

> BS04468.3prime
ATGGTCTAGAAAGCTTCTACCAGGGCCTCCAGAGATTTGGCTTGGATTTG
GATGTGGAGGCCACAAGATGATCCAATTCTTTCGCAAATTCGAAACTCGG
CTGATAGCCGTTGTGTTGCAGAAATTGGGACACTTCCAGGACGCATTCTC
GAAAGCCACTCCAATAGCAATCAATTGGGCTCTGATATACTCCGGATGTA
GGCGCTGTGGTGGGCGTGGCCACCGGACAGTTTTTCTTGCTCAGGTGGTG
AACTGCCAATTCCAGGACATCTCCCATATCCATTTTGGCCATGGTCTCGC
CGTCCAGATGCGACACCTCCTGAAGCAGGTCCTTAATAAAGTCCAGGCAG
CGATTGATGCGTGACCGCCTCTTCCTCTCCATCATTGGCTTAAAAACCTC
TCGATACTGATGAGATCGTGACTTTGCTCCAACATGAGACTTCTGCTCCT
CGGGACGTGCCATCATGTCGACTGATAACT

BS04468.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG5927-PA 450 Her-RA 1..450 466..17 2250 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:34:12
Subject Length Description Subject Range Query Range Score Percent Strand
Her-RA 614 CG5927-RA 25..474 466..17 2250 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:34:08
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18204543..18204831 17..305 1445 100 Plus
X 23542271 X 18204958..18205120 304..466 815 100 Plus
Blast to na_te.dros performed on 2015-02-12 04:34:10 has no hits.

BS04468.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:49:15 Download gff for BS04468.3prime
Subject Subject Range Query Range Percent Splice Strand
Her-PA 1..450 17..466 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:11:01 Download gff for BS04468.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5927-PA 1..450 17..466 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:06:15 Download gff for BS04468.3prime
Subject Subject Range Query Range Percent Splice Strand
Her-RA 18..474 17..474 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:01:15 Download gff for BS04468.3prime
Subject Subject Range Query Range Percent Splice Strand
Her-RA 18..474 17..474 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:01:15 Download gff for BS04468.3prime
Subject Subject Range Query Range Percent Splice Strand
X 18204543..18204830 17..304 100 <- Plus
X 18204959..18205127 305..474 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:06:15 Download gff for BS04468.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18098576..18098863 17..304 100 <- Plus
arm_X 18098992..18099160 305..474 97   Plus

BS04468.5prime Sequence

480 bp (479 high quality bases) assembled on 2005-12-01

> BS04468.5prime
GAAGTTATCAGTCGACATGATGGCACGTCCCGAGGAGCAGAAGTCTCATG
TTGGAGCAAAGTCACGATCTCATCAGTATCGAGAGGTTTTTAAGCCAATG
ATGGAGAGGAAGAGGCGGTCACGCATCAATCGCTGCCTGGACTTTATTAA
GGACCTGCTTCAGGAGGTGTCGCATCTGGACGGCGAGACCATGGCCAAAA
TGGATATGGGAGATGTCCTGGAATTGGCAGTTCACCACCTGAGCAAGAAA
AACTGTCCGGTGGCCACGCCCACCACAGCGCCTACATCCGGAGTATATCA
GAGCCCAATTGATTGCTATTGGAGTGGCTTTCGAGAATGCGTCCTGGAAG
TGTCCCAATTTCTGCAACACAACGGCTATCAGCCGAGTTTCGAATTTGCG
AAAGAATTGGATCATCTTGTGGCCTCCACATCCAAATCCAAGCCAAATCT
CTGGAGGCCCTGGTAGAAGCTTTCTAGACC

BS04468.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG5927-PA 450 Her-RA 1..450 17..466 2250 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:21:35
Subject Length Description Subject Range Query Range Score Percent Strand
Her-RA 614 CG5927-RA 25..474 17..466 2250 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:21:29
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18204543..18204831 466..178 1445 100 Minus
X 23542271 X 18204958..18205120 179..17 815 100 Minus
Blast to na_te.dros performed on 2015-02-12 05:21:32 has no hits.

BS04468.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:49:16 Download gff for BS04468.5prime
Subject Subject Range Query Range Percent Splice Strand
Her-PA 1..450 17..466 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:11:02 Download gff for BS04468.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5927-PA 1..450 17..466 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:31:33 Download gff for BS04468.5prime
Subject Subject Range Query Range Percent Splice Strand
Her-RA 18..474 9..466 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:34:46 Download gff for BS04468.5prime
Subject Subject Range Query Range Percent Splice Strand
Her-RA 18..474 9..466 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:34:46 Download gff for BS04468.5prime
Subject Subject Range Query Range Percent Splice Strand
X 18204543..18204830 179..466 100 <- Minus
X 18204959..18205127 9..178 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:31:33 Download gff for BS04468.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18098576..18098863 179..466 100 <- Minus
arm_X 18098992..18099160 9..178 97   Minus

BS04468.complete Sequence

482 bp (482 high quality bases) assembled on 2005-09-13

GenBank Submission: FJ634951

> BS04468.complete
GAAGTTATCAGTCGACATGATGGCACGTCCCGAGGAGCAGAAGTCTCATG
TTGGAGCAAAGTCACGATCTCATCAGTATCGAGAGGTTTTTAAGCCAATG
ATGGAGAGGAAGAGGCGGTCACGCATCAATCGCTGCCTGGACTTTATTAA
GGACCTGCTTCAGGAGGTGTCGCATCTGGACGGCGAGACCATGGCCAAAA
TGGATATGGGAGATGTCCTGGAATTGGCAGTTCACCACCTGAGCAAGAAA
AACTGTCCGGTGGCCACGCCCACCACAGCGCCTACATCCGGAGTATATCA
GAGCCCAATTGATTGCTATTGGAGTGGCTTTCGAGAATGCGTCCTGGAAG
TGTCCCAATTTCTGCAACACAACGGCTATCAGCCGAGTTTCGAATTTGCG
AAAGAATTGGATCATCTTGTGGCCTCCACATCCAAATCCAAGCCAAATCT
CTGGAGGCCCTGGTAGAAGCTTTCTAGACCAT

BS04468.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:10:47
Subject Length Description Subject Range Query Range Score Percent Strand
Her-RA 450 CG5927-PA 1..450 17..466 2250 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:10:48
Subject Length Description Subject Range Query Range Score Percent Strand
Her-RA 614 CG5927-RA 25..474 17..466 2250 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:10:44
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18204543..18204831 466..178 1445 100 Minus
X 23542271 X 18204958..18205120 179..17 815 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:10:45 has no hits.

BS04468.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:32:06 Download gff for BS04468.complete
Subject Subject Range Query Range Percent Splice Strand
Her-RA 1..450 17..466 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:16:15 Download gff for BS04468.complete
Subject Subject Range Query Range Percent Splice Strand
Her-RA 1..450 17..466 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:27:28 Download gff for BS04468.complete
Subject Subject Range Query Range Percent Splice Strand
Her-RA 25..474 17..466 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:32:06 Download gff for BS04468.complete
Subject Subject Range Query Range Percent Splice Strand
Her-RA 1..450 17..466 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:12:35 Download gff for BS04468.complete
Subject Subject Range Query Range Percent Splice Strand
Her-RA 25..474 17..466 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:12:35 Download gff for BS04468.complete
Subject Subject Range Query Range Percent Splice Strand
X 18204543..18204830 179..466 100 <- Minus
X 18204959..18205120 17..178 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:27:28 Download gff for BS04468.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 18098576..18098863 179..466 100 <- Minus
arm_X 18098992..18099153 17..178 100   Minus

BS04468.pep Sequence

Translation from 16 to 465

> BS04468.pep
MMARPEEQKSHVGAKSRSHQYREVFKPMMERKRRSRINRCLDFIKDLLQE
VSHLDGETMAKMDMGDVLELAVHHLSKKNCPVATPTTAPTSGVYQSPIDC
YWSGFRECVLEVSQFLQHNGYQPSFEFAKELDHLVASTSKSKPNLWRPW*

BS04468.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:40:55
Subject Length Description Subject Range Query Range Score Percent Strand
Her-PA 149 CG5927-PA 1..149 1..149 802 100 Plus
E(spl)mbeta-HLH-PA 195 CG14548-PA 8..114 16..116 188 37.4 Plus
E(spl)mgamma-HLH-PA 205 CG8333-PA 10..108 16..116 185 39.6 Plus
E(spl)m3-HLH-PA 224 CG8346-PA 6..113 16..116 183 35.2 Plus
E(spl)mdelta-HLH-PA 173 CG8328-PA 10..105 16..113 166 36.4 Plus