Clone Sequence Records
BS04468.3prime Sequence
480 bp (479 high quality bases) assembled on 2005-12-01
> BS04468.3prime
ATGGTCTAGAAAGCTTCTACCAGGGCCTCCAGAGATTTGGCTTGGATTTG
GATGTGGAGGCCACAAGATGATCCAATTCTTTCGCAAATTCGAAACTCGG
CTGATAGCCGTTGTGTTGCAGAAATTGGGACACTTCCAGGACGCATTCTC
GAAAGCCACTCCAATAGCAATCAATTGGGCTCTGATATACTCCGGATGTA
GGCGCTGTGGTGGGCGTGGCCACCGGACAGTTTTTCTTGCTCAGGTGGTG
AACTGCCAATTCCAGGACATCTCCCATATCCATTTTGGCCATGGTCTCGC
CGTCCAGATGCGACACCTCCTGAAGCAGGTCCTTAATAAAGTCCAGGCAG
CGATTGATGCGTGACCGCCTCTTCCTCTCCATCATTGGCTTAAAAACCTC
TCGATACTGATGAGATCGTGACTTTGCTCCAACATGAGACTTCTGCTCCT
CGGGACGTGCCATCATGTCGACTGATAACT
BS04468.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5927-PA | 450 | Her-RA | 1..450 | 466..17 | 2250 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:34:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Her-RA | 614 | CG5927-RA | 25..474 | 466..17 | 2250 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:34:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18204543..18204831 | 17..305 | 1445 | 100 | Plus |
X | 23542271 | X | 18204958..18205120 | 304..466 | 815 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:34:10 has no hits.
BS04468.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:49:15 Download gff for
BS04468.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Her-PA | 1..450 | 17..466 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:11:01 Download gff for
BS04468.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5927-PA | 1..450 | 17..466 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:06:15 Download gff for
BS04468.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Her-RA | 18..474 | 17..474 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:01:15 Download gff for
BS04468.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Her-RA | 18..474 | 17..474 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:01:15 Download gff for
BS04468.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18204543..18204830 | 17..304 | 100 | <- | Plus |
X | 18204959..18205127 | 305..474 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:06:15 Download gff for
BS04468.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18098576..18098863 | 17..304 | 100 | <- | Plus |
arm_X | 18098992..18099160 | 305..474 | 97 | | Plus |
BS04468.5prime Sequence
480 bp (479 high quality bases) assembled on 2005-12-01
> BS04468.5prime
GAAGTTATCAGTCGACATGATGGCACGTCCCGAGGAGCAGAAGTCTCATG
TTGGAGCAAAGTCACGATCTCATCAGTATCGAGAGGTTTTTAAGCCAATG
ATGGAGAGGAAGAGGCGGTCACGCATCAATCGCTGCCTGGACTTTATTAA
GGACCTGCTTCAGGAGGTGTCGCATCTGGACGGCGAGACCATGGCCAAAA
TGGATATGGGAGATGTCCTGGAATTGGCAGTTCACCACCTGAGCAAGAAA
AACTGTCCGGTGGCCACGCCCACCACAGCGCCTACATCCGGAGTATATCA
GAGCCCAATTGATTGCTATTGGAGTGGCTTTCGAGAATGCGTCCTGGAAG
TGTCCCAATTTCTGCAACACAACGGCTATCAGCCGAGTTTCGAATTTGCG
AAAGAATTGGATCATCTTGTGGCCTCCACATCCAAATCCAAGCCAAATCT
CTGGAGGCCCTGGTAGAAGCTTTCTAGACC
BS04468.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 16:48:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5927-PA | 450 | Her-RA | 1..450 | 17..466 | 2250 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:21:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Her-RA | 614 | CG5927-RA | 25..474 | 17..466 | 2250 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:21:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18204543..18204831 | 466..178 | 1445 | 100 | Minus |
X | 23542271 | X | 18204958..18205120 | 179..17 | 815 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:21:32 has no hits.
BS04468.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 07:49:16 Download gff for
BS04468.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Her-PA | 1..450 | 17..466 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 08:11:02 Download gff for
BS04468.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5927-PA | 1..450 | 17..466 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:31:33 Download gff for
BS04468.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Her-RA | 18..474 | 9..466 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:34:46 Download gff for
BS04468.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Her-RA | 18..474 | 9..466 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:34:46 Download gff for
BS04468.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18204543..18204830 | 179..466 | 100 | <- | Minus |
X | 18204959..18205127 | 9..178 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:31:33 Download gff for
BS04468.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18098576..18098863 | 179..466 | 100 | <- | Minus |
arm_X | 18098992..18099160 | 9..178 | 97 | | Minus |
BS04468.complete Sequence
482 bp (482 high quality bases) assembled on 2005-09-13
GenBank Submission: FJ634951
> BS04468.complete
GAAGTTATCAGTCGACATGATGGCACGTCCCGAGGAGCAGAAGTCTCATG
TTGGAGCAAAGTCACGATCTCATCAGTATCGAGAGGTTTTTAAGCCAATG
ATGGAGAGGAAGAGGCGGTCACGCATCAATCGCTGCCTGGACTTTATTAA
GGACCTGCTTCAGGAGGTGTCGCATCTGGACGGCGAGACCATGGCCAAAA
TGGATATGGGAGATGTCCTGGAATTGGCAGTTCACCACCTGAGCAAGAAA
AACTGTCCGGTGGCCACGCCCACCACAGCGCCTACATCCGGAGTATATCA
GAGCCCAATTGATTGCTATTGGAGTGGCTTTCGAGAATGCGTCCTGGAAG
TGTCCCAATTTCTGCAACACAACGGCTATCAGCCGAGTTTCGAATTTGCG
AAAGAATTGGATCATCTTGTGGCCTCCACATCCAAATCCAAGCCAAATCT
CTGGAGGCCCTGGTAGAAGCTTTCTAGACCAT
BS04468.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:10:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Her-RA | 450 | CG5927-PA | 1..450 | 17..466 | 2250 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:10:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Her-RA | 614 | CG5927-RA | 25..474 | 17..466 | 2250 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:10:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18204543..18204831 | 466..178 | 1445 | 100 | Minus |
X | 23542271 | X | 18204958..18205120 | 179..17 | 815 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:10:45 has no hits.
BS04468.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:32:06 Download gff for
BS04468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Her-RA | 1..450 | 17..466 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:16:15 Download gff for
BS04468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Her-RA | 1..450 | 17..466 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:27:28 Download gff for
BS04468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Her-RA | 25..474 | 17..466 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:32:06 Download gff for
BS04468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Her-RA | 1..450 | 17..466 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:12:35 Download gff for
BS04468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Her-RA | 25..474 | 17..466 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:12:35 Download gff for
BS04468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18204543..18204830 | 179..466 | 100 | <- | Minus |
X | 18204959..18205120 | 17..178 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:27:28 Download gff for
BS04468.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18098576..18098863 | 179..466 | 100 | <- | Minus |
arm_X | 18098992..18099153 | 17..178 | 100 | | Minus |
BS04468.pep Sequence
Translation from 16 to 465
> BS04468.pep
MMARPEEQKSHVGAKSRSHQYREVFKPMMERKRRSRINRCLDFIKDLLQE
VSHLDGETMAKMDMGDVLELAVHHLSKKNCPVATPTTAPTSGVYQSPIDC
YWSGFRECVLEVSQFLQHNGYQPSFEFAKELDHLVASTSKSKPNLWRPW*
BS04468.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:40:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Her-PA | 149 | CG5927-PA | 1..149 | 1..149 | 802 | 100 | Plus |
E(spl)mbeta-HLH-PA | 195 | CG14548-PA | 8..114 | 16..116 | 188 | 37.4 | Plus |
E(spl)mgamma-HLH-PA | 205 | CG8333-PA | 10..108 | 16..116 | 185 | 39.6 | Plus |
E(spl)m3-HLH-PA | 224 | CG8346-PA | 6..113 | 16..116 | 183 | 35.2 | Plus |
E(spl)mdelta-HLH-PA | 173 | CG8328-PA | 10..105 | 16..113 | 166 | 36.4 | Plus |